VIRULIGN

Description

virulign website  

VIRULIGN is a tool for codon-correct pairwise alignments, with an augmented functionality to annotate the alignment according the positions of the proteins. We present a tutorial demonstrating VIRULIGN's functionality for three different pathogens (i.e., HIV-1, Dengue virus, Zika virus).

Environment Modules

Run module spider virulign to find out what environment modules are available for this application.

System Variables

• HPC_VIRULIGN_DIR - installation directory
• HPC_VIRULIGN_BIN - executable directory

Citation

If you publish research that uses virulign you have to cite it as follows:

Libin PJK, Deforche K, Abecasis AB and Theys K., (2018), VIRULIGN: fast codon-correct alignment and annotation of viral genomes, Bioinformatics, bty851, https://doi.org/10.1093/bioinformatics/bty851