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pyrpipe website  

pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Seq analyses workflow by integrating popular RNA-Seq analysis programs in an object oriented manner. pyrpipe can be used on local computers or on HPC environments to manage analysis of RNA-Seq data. Users can use the easy-to-use APIs to popular bioinformatic tools provided with pyrpipe, or can use the methods provided in the pyrpipe_engine module to integrate any other third-party program in their pipeline.

Environment Modules

Run module spider pyrpipe to find out what environment modules are available for this application.

System Variables

  • HPC_PYRPIPE_DIR - installation directory
  • HPC_PYRPIPE_BIN - executable directory