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phyutility website  

Phyutility (fyoo-til-i-te) is a command line program that performs simple analyses or modifications on both trees and data matrices. Makes use of JADE (PEBLS) and JEBL libraries.

Environment Modules

Run module spider phyutility to find out what environment modules are available for this application.

System Variables

  • HPC_PHYUTILITY_DIR - installation directory
  • HPC_PHYUTILITY_BIN - executable directory
  • HPC_PHYUTILITY_DOC - documentation directory
  • HPC_PHYUTILITY_TEST - test data directory


If you publish research that uses phyutility you have to cite it as follows:

Smith, S. A. and Dunn, C. W. (2008) Phyutility: a phyloinformatics tool for trees, alignments, and molecular data. Bioinformatics. 24: 715-716