LoRMA

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Description

lorma website  

LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines.

Required Modules

Serial

  • lorma

System Variables

  • HPC_LORMA_DIR - installation directory

Additional Information

LoRMA needs to be launched for access to LoRMA and lordec binaries. Run the programs listed below with

module load lorma
launch_lorma <executable> <arguments>

where executables include

h5dump
lordec-build-SR-graph
lordec-correct
lordec-stat
lordec-trim
lordec-trim-split
LoRMA
lorma.sh



Citation

If you publish research that uses lorma you have to cite it as follows:

L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016.