LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines.
- HPC_LORMA_DIR - installation directory
LoRMA needs to be launched for access to LoRMA and lordec binaries. Run the programs listed below with
module load lorma launch_lorma <executable> <arguments>
where executables include
If you publish research that uses lorma you have to cite it as follows:
L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016.