Search results

Finder
[[Category:Software]] independent software that generatess gene annotations in GTF format. finder

3 KB (345 words) - 16:42, 15 August 2022
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Deepcoil
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (241 words) - 18:49, 12 August 2022
CANVAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:23, 26 August 2020
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
HOMER
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (330 words) - 18:19, 15 August 2022
MPB
[[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele

3 KB (344 words) - 21:21, 6 December 2019
Gephi
[[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.

3 KB (337 words) - 17:42, 11 January 2023
Pbpigeon
[[Category:Software]][Category:Biology]]

2 KB (275 words) - 22:37, 21 January 2024
VMD
[[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.

3 KB (384 words) - 17:33, 22 August 2022
Freecad
[[Category:Software]][[Category:Modeling]]

2 KB (241 words) - 00:16, 15 February 2023
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022
Synima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (313 words) - 20:34, 27 May 2022
Fast-gep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 15:46, 22 July 2022
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
SST-Core Install
[[SST-Core|Back to SST-Core page]][[Category:Software]]

1 KB (195 words) - 14:50, 16 August 2017
IAnnotateSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge

3 KB (330 words) - 21:21, 6 December 2019
Mapdamage
[[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]

3 KB (299 words) - 21:28, 16 September 2022
Llama
[[Category:Software]]

2 KB (298 words) - 03:47, 10 May 2024
Bioawk
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 12:54, 15 August 2022
GLMsingle
[[Category:Software]][[Category:imaging]]

2 KB (291 words) - 20:33, 24 August 2022
Consed
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 18:39, 12 August 2022
BAPS
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}

3 KB (313 words) - 18:07, 12 August 2022
NpScarf
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:29, 4 September 2020
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
SparCC
[[Category:Software]][[Category:Biology]] |{{#vardefine:exe|}} 

2 KB (264 words) - 15:47, 22 August 2022
Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
Category:Data Science
[[Category:Software]][[Category:Data]]

41 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
SQANTI3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 20:35, 27 May 2022
SpliceTrap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (347 words) - 20:44, 12 August 2022
SNPhylo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (340 words) - 17:48, 10 June 2022
Miniasm
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (306 words) - 20:10, 18 August 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
Delft3D
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

3 KB (398 words) - 13:35, 17 April 2024
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
PyEXR
[[Category:Software]][[Category:Programming]]

2 KB (245 words) - 12:25, 26 August 2022
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
Triobinning
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (276 words) - 13:31, 15 August 2022
APT
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (342 words) - 20:09, 7 May 2024
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
LEfSe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:14, 29 September 2020
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
MCarts
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (399 words) - 14:53, 14 December 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
Pm4py
[[Category:Software]][[Category:Machine Learning]][[Category:Data Mining]]

3 KB (336 words) - 22:06, 5 June 2023
DISCOVAR de novo
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}

3 KB (326 words) - 14:41, 15 August 2022
Cx oracle
[[Category:Software]][[Category:Database]][[Category:Utility]]

2 KB (269 words) - 14:22, 15 August 2022
Jq
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
UNCALLED
[[Category:Software]]

2 KB (281 words) - 20:53, 12 August 2022
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
Ncview
[[Category:Software]][[Category:Visualization]] |{{#vardefine:exe|}} 

2 KB (317 words) - 14:42, 19 August 2022
GPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:14, 15 August 2022
PCRE
[[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.

3 KB (307 words) - 12:10, 26 August 2022
Pomoxis
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (285 words) - 18:48, 21 August 2022
Mdanalysis
[[Category:Software]][[Category:Biology]][[Category:Physics]]

3 KB (387 words) - 19:49, 12 August 2022
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
PyVCF
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (236 words) - 20:08, 21 August 2022
IsoSel
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://doua.prabi.fr/software/isosel}}

3 KB (345 words) - 14:29, 26 March 2021
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
MELTING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the

3 KB (306 words) - 19:50, 12 August 2022
RFMIX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 14:01, 11 June 2020
NCBI BLAST+
[[Category:Software]][[Category:biology]]

3 KB (344 words) - 19:55, 12 August 2022
GEMMA
[[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode

2 KB (279 words) - 21:21, 6 December 2019
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
Talesf
[[Category:Software]][[Category:Phylogenetics]]

2 KB (256 words) - 21:29, 6 December 2019
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
Funannotate
[[Category:Software]][[Category:Phylogenetics]] ...t has evolved over time to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submi

3 KB (375 words) - 16:51, 15 August 2022
Cutadapt
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (263 words) - 18:44, 12 August 2022
SOAPsplice
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (315 words) - 00:06, 22 August 2022
Connectomemapper3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:55, 15 August 2022
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
Mfold
[[Category:Software]][[Category:Biology]][[Category:Structure]]

2 KB (277 words) - 19:51, 12 August 2022
MOSAIK
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} 

3 KB (414 words) - 11:59, 19 August 2022
ForeSeqs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 21:21, 6 December 2019
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
Mmaction2
[[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]

2 KB (277 words) - 19:16, 6 June 2023
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
UCSC
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (349 words) - 20:53, 12 August 2022
Xapian
[[Category:Software]][[Category:Library]]

2 KB (265 words) - 15:42, 10 June 2022
GenomicNeuralnet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:09, 27 August 2020
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
Scapp
[[Category:Software]][[Category:Genomics]][[Category:Assembly]]

2 KB (267 words) - 20:57, 10 August 2023
Gurobi
[[Category:Software]][[Category:Math]][[Category:Programming]]

2 KB (269 words) - 12:22, 26 August 2022
Category:Shell
[[Category:CLI]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:29, 23 August 2022
OrthoFiller
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 20:02, 31 May 2022
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
Proteinortho
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}

2 KB (302 words) - 20:27, 12 August 2022
SEPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (313 words) - 20:39, 12 August 2022
Vg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (299 words) - 14:42, 4 September 2020
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
TPP
[[Category:Software]][[Category:Biology]][[Category:Chemistry]][[Category:spectroscopy]]

2 KB (266 words) - 20:22, 24 August 2022
Mlcoalsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...rl|https://bioinformatics.cragenomica.es/numgenomics/people/sebas/software/software.html}}

3 KB (324 words) - 21:22, 6 December 2019
Taiyaki
[[Category:Software]][[Category:Phylogenetics]] Taiyaki is research software for training models for basecalling Oxford Nanopore reads.

2 KB (240 words) - 18:58, 1 June 2022
Asset
[[Category:Software]]

2 KB (253 words) - 20:07, 15 June 2023
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
S.A.G.E
[[Category:Software]][[Category:Phylogenetics]] is a free software package containing programs for use in the genetic analysis of family, pedi

2 KB (277 words) - 15:17, 10 September 2021
Face recognition
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 14:56, 3 June 2022
Musket
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (351 words) - 13:44, 19 August 2022
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
CONCOCT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues: [https://github.com/

3 KB (308 words) - 18:39, 12 August 2022
CNSpipeline
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:19, 6 December 2019
Nullarbor
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 19:38, 31 May 2022
Pindel
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:23, 6 December 2019
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
TetGen
[[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}

2 KB (253 words) - 16:28, 22 August 2022
OTB
[[Category:Software]][[Category:Geospatial]]

3 KB (311 words) - 17:27, 10 June 2022
TreeTime
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 17:44, 2 November 2020
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
Seqtk
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (263 words) - 20:40, 12 August 2022
DeTiN
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (249 words) - 14:39, 15 August 2022
Assexon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 20:17, 10 February 2020
Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
RADICAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}

2 KB (295 words) - 21:28, 21 August 2022
SU2
[[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.

2 KB (278 words) - 18:50, 1 June 2022
Peneasy
[[Category:Software]]

4 KB (460 words) - 18:26, 27 May 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
Minimap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (385 words) - 19:07, 10 June 2022
Mvftools
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 13:58, 30 April 2020
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
CIRCexplorer2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 21:03, 6 December 2019
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
OpenCL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 17:52, 19 August 2022
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
Mvrsion
[[Category:Software]][[Category:Sequencing]]

2 KB (246 words) - 14:24, 29 November 2022
CAP3
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (302 words) - 13:19, 15 August 2022
Giotto
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 19:31, 26 May 2022
Imoka
iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)

3 KB (346 words) - 17:07, 27 May 2022
GTOOL
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}

3 KB (319 words) - 12:51, 10 September 2020
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
Category:Imaging
[[Category:Software]]

46 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Msvar
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.

2 KB (260 words) - 13:35, 19 August 2022
NanoVar
[[Category:Software]][[Category:Phylogenetics]]

3 KB (294 words) - 21:23, 6 December 2019
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
Trvz
[[Category:Software]]

2 KB (273 words) - 14:46, 28 July 2023
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
Category:Genomics
[[Category:Biology]][[Category:Software]] Genomics Software

347 members (0 subcategories, 0 files) - 15:26, 23 August 2022
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
EAGLE
[[Category:Software]][[Category:Phylogenetics]] The Enhanced Artificial Genome Engine (EAGLE) software is designed to simulate the behaviour of Illumina's Next Generation Sequenc

2 KB (266 words) - 22:29, 26 August 2020
TEToolkit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (259 words) - 20:46, 12 August 2022
DNA Clust
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (252 words) - 18:50, 12 August 2022
Mg-rast
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (267 words) - 21:21, 6 December 2019
Iupred2a
[[Category:Software]]

2 KB (271 words) - 16:25, 12 October 2023
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
Category:Healthcare
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
Bridger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (341 words) - 13:14, 15 August 2022
HLAminer
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

4 KB (541 words) - 14:55, 14 December 2022
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Galaxy Upgrade Highlights
[[Category:Software]][[Category:Galaxy]]

3 KB (417 words) - 20:34, 18 April 2018
Nanofilt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 13:48, 19 August 2022
Harvesttools
[[Category:Software]]

2 KB (285 words) - 17:38, 13 October 2022
Tecplot 360 EX
[[Category:Software]][[Category:Math]][[Category:Animation]][[Category:Fluid Dynamics]][[Catego

3 KB (337 words) - 14:56, 19 August 2022
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
ClustalW
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (265 words) - 18:37, 12 August 2022
Mach2VCF
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 14:49, 10 June 2022
Medaka
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (290 words) - 14:37, 21 August 2023
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
FastTree
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (388 words) - 16:39, 15 August 2022
Alphaimpute
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}

3 KB (337 words) - 12:37, 12 August 2022
Tapestri
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 19:07, 1 June 2022
Rrnaselector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (304 words) - 21:24, 6 December 2019
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
HaMStR
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (420 words) - 20:09, 12 August 2022
Category:Data Mining
[[Category:Data]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:25, 23 August 2022
Bamsurgeon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:29, 22 September 2020
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
GATE
[[Category:Software]][[Category:Library]]

2 KB (264 words) - 19:51, 10 June 2022
Cgmaptools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 21:01, 6 December 2019
Clairvoyante
[[Category:Software]][[Category:Phylogenetics]]

4 KB (453 words) - 13:39, 15 August 2022
Bxh xcede tools
[[Category:Software]][[Category:Biology]]

2 KB (291 words) - 18:22, 12 August 2022
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
DeSALT
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

3 KB (350 words) - 14:38, 15 August 2022
ReCOGnizer
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 17:03, 3 December 2020
GoPHY
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:40, 12 November 2020
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
EEGLAB
[[Category:Software]][[Category:Biology]][[Category:Biology]]

2 KB (271 words) - 14:56, 15 August 2022
PyTorch
[[Category:Software]][[Category:Library]][[Category:Math]] ...neural networks and deep learning. PyTorch also has a large user base and software ecosystem.

5 KB (691 words) - 16:39, 14 December 2022
PhaME
[[Category:Software]][[Category:phylogenetics]]

2 KB (287 words) - 14:18, 9 March 2020
GDB
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}

4 KB (494 words) - 16:13, 9 January 2023
Medusa
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
QGIS
[[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (288 words) - 20:27, 24 August 2022
Merge peaks
[[Category:Software]][[Category:Workflow Automation]]

2 KB (254 words) - 18:51, 15 August 2022
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
NanoCount
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 20:28, 14 May 2020
Ngs-bits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (296 words) - 16:57, 10 June 2022
FGMP
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 21:20, 6 December 2019
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
TREEPUZZLE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (450 words) - 19:31, 10 June 2022
DECX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 17:54, 26 April 2021
SOAPdenovo
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (314 words) - 00:05, 22 August 2022
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
NextDenovo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 18:03, 10 May 2021
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
CasOFFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:58, 26 August 2020
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
Mauve
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (448 words) - 19:49, 12 August 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
RaGOO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
FALCON
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (395 words) - 15:19, 15 August 2022
Applications FAQ
...n package from a binary archive (wheel) that was built on a system against software libraries that are not compatible with HiPerGator. A typical error message > devtools::install_github("author/software")

4 KB (579 words) - 20:42, 16 October 2023
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
Fluent
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (266 words) - 16:46, 15 August 2022
Csubst
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (380 words) - 22:12, 26 July 2023
PROJ
[[Category:Software]][[Category: Library]][[Category: Geospatial]]

2 KB (240 words) - 20:26, 24 August 2022
Macrel
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 17:45, 10 May 2024
Biolite
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]]

3 KB (362 words) - 12:54, 15 August 2022
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
GDAL
[[Category:Software]][[Category:Geospatial]][[Category:Library]]

3 KB (313 words) - 18:21, 8 July 2022
JCVI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 14:30, 4 September 2020
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
FcGENE
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]][[Category:Genomics]]

3 KB (326 words) - 16:38, 15 August 2022
Fast-Plast
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (487 words) - 21:20, 6 December 2019
Category:Pipeline
[[Category:Biology]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:27, 23 August 2022
Spark
[[Category:Software]][[Category:Utility]]

11 KB (1,573 words) - 22:01, 15 December 2022
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
ASTRID
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 15:16, 12 August 2022
Mirdeep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 18:00, 27 May 2022
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
Sailfish
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]][[Category:RNA-Se |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/sailfish/}}

4 KB (482 words) - 22:02, 21 August 2022
SUPPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 21:24, 6 December 2019
Nvhpc
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Library]][[Categor

3 KB (334 words) - 17:24, 19 August 2022
R8s
[[Category:Software]][[Category:phylogenetics]]

3 KB (456 words) - 21:24, 6 December 2019
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
SQL Developer
[[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.

3 KB (323 words) - 17:32, 15 August 2022
Libint
[[Category:Software]][[Category:Library]]

2 KB (252 words) - 15:41, 6 June 2022
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
Yolov4 darknet
[[Category:Software]][[Category:Machine Learning]]

2 KB (244 words) - 19:21, 1 June 2022
Gscripts
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 17:25, 15 August 2022
Deepfri
[[Category:Software]][[Category:Machine Learning]][[Category:Biology]]

2 KB (290 words) - 19:30, 10 March 2023
Primus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 21:22, 6 December 2019
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
PBJelly
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (309 words) - 17:07, 21 August 2022
PRINSEQ++
[[Category:Software]][[Category:phylogenetics]]

2 KB (298 words) - 18:11, 15 April 2020
PCIT
[[Category:Software]][[Category:Biology]]

3 KB (302 words) - 20:19, 12 August 2022
AdapterRemoval
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 20:47, 11 August 2022
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
BSseeker2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:40, 10 June 2022
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
Modules Basic Usage
...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...spective branches. E.g., if you need to load the module for the "espresso" software that was built with MVAPICH2 support using Intel Compiler version 11.1 you

5 KB (745 words) - 16:07, 13 February 2023
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
NECAT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 13:32, 23 June 2020
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
OrganellePBA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:22, 6 December 2019
FastPlast
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 20:23, 23 May 2022
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
DRep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
BERTopic
[[Category:Software]][[Category:Machine Learning]]

2 KB (283 words) - 14:00, 27 May 2022
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
ConPADE
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 22:14, 26 August 2020
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
Hecaton
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (277 words) - 18:57, 6 June 2022
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
SequelQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
CHARMM
[[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 13:51, 6 June 2022
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
Gepard
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 22:10, 27 August 2020
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
DDSCAT
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|}} 

2 KB (326 words) - 14:30, 15 August 2022
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
EpiNano
[[Category:Software]][[Category:Biology]][[Category: NGS]]

2 KB (241 words) - 18:35, 21 July 2022
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
SEQuel
[[Category:Software]][[Category:NGS]][[Category:Biology]]

3 KB (382 words) - 22:39, 21 August 2022
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
Vcontact
[[Category:Software]][[Category:Phylogenetics]]

3 KB (358 words) - 20:04, 27 May 2022
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
Globus
[[Category:Software]][[Category:File Management]] ...h [https://www.globus.org/globus-connect-personal Globus Connect Personal] software they can use to set up a personal collection on their computing device (Win

11 KB (1,849 words) - 14:14, 31 January 2024
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
Tandem-Genotypes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:01, 1 June 2022
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
SomaticSeq
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 00:06, 22 August 2022
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
NanoSV
[[Category:Software]][[Category:Biology]][[Category:Genomics]] NanoSV is a software package that can be used to identify structural genomic variations in long-

2 KB (282 words) - 14:23, 19 August 2022
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
FLASh
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://ccb.jhu.edu/software/FLASH/}}

2 KB (297 words) - 16:44, 15 August 2022
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
PacMAP
[[Category:Software]][[Category:Genomics]]

3 KB (304 words) - 18:24, 11 February 2023
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
Tbprofiler
[[Category:Software]]

3 KB (312 words) - 21:31, 10 February 2023
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
PolyGembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:45, 3 November 2020
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
Proovread
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (269 words) - 20:27, 12 August 2022
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
Deprecation
[[Category:Software]] ...databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months after being added

9 KB (946 words) - 22:32, 15 December 2022
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
Pbmm2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 20:08, 31 May 2022
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
LSD2
[[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”

2 KB (269 words) - 20:45, 30 April 2020
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
WIsH
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:29, 6 December 2019
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Sra-human-scrubber
[[Category:Software]][[Category:Genomics]]

3 KB (395 words) - 15:57, 22 August 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
EVidenceModeler
[[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in

3 KB (311 words) - 14:59, 27 July 2020
RepeatSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 15:29, 27 May 2022
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
SPM
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}

3 KB (327 words) - 17:00, 13 February 2024
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
Bifrost
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:11, 6 December 2019
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
Eagle-rc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:30, 26 August 2020
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
PHITS
[[Category:Software]][[Category:Physics]]

3 KB (336 words) - 12:38, 15 May 2024
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
Hgtector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (253 words) - 17:04, 10 October 2022
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
HmmCleaner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:25, 27 August 2020
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
Maxima
[[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (298 words) - 21:21, 6 December 2019
Porechop
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:23, 6 December 2019
AlphaPulldown
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] If you use this software, please cite it along the dependencies it uses internally, at least:

3 KB (300 words) - 14:11, 10 July 2023
Tcoffee
[[Category:Software]][[Category:Biology]]

2 KB (280 words) - 20:46, 12 August 2022
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
Megalodon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 22:24, 8 September 2020
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
Bcftools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 19:09, 11 April 2024
FEniCS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:20, 6 December 2019
ViewBS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (384 words) - 17:30, 22 August 2022
ROOTPy
[[Category:Software]][[Category:Data Science]]

3 KB (389 words) - 16:49, 21 August 2022
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
Liftoff
[[Category:Software]][[Category:Phylogenetics]]

3 KB (399 words) - 13:14, 23 September 2020
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
MP-EST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

4 KB (489 words) - 12:01, 19 August 2022
Mlst
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:22, 6 December 2019
LAStools
[[Category:Software]][[Category:Imaging]]

2 KB (292 words) - 19:37, 15 August 2022
VirusFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] VirusFinder 2 is a new software tool for characterizing intra-host viruses through next generation sequenci

3 KB (410 words) - 21:29, 6 December 2019
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
OmniCLIP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 14:52, 12 November 2020
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
EXpress
[[Category:Software]][[Category:Biology]][[Category:NGS]] This module enables the use of the eXpress software

3 KB (383 words) - 18:53, 12 August 2022
Tigmint
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 21:29, 6 December 2019
Maskrc-svg
[[Category:Software]][[Category:Genomics]]

2 KB (255 words) - 20:32, 26 January 2023
NCBI GenBank Tools
[[Category:Software]][[Category:Biology]][[Category:Healthcare]]

2 KB (291 words) - 14:33, 19 August 2022
MapThin
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:21, 6 December 2019
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
RiboTaper
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/}}

3 KB (293 words) - 13:48, 20 May 2020
NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
PsRobot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 17:12, 1 June 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
Mykrobe
[[Category:Software]]

2 KB (246 words) - 16:37, 21 June 2023
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
CBGpipe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:59, 26 August 2020
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
Clview
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 13:48, 15 August 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
GPhoCS
[[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim

3 KB (300 words) - 21:20, 6 December 2019
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
FastGEAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] FastGEAR is a software for analyzing sequence alignments.

3 KB (313 words) - 20:13, 18 October 2022
GARLI
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:exe|1}} 

3 KB (485 words) - 16:53, 15 August 2022
Pycharm-pro
[[Category:Software]]

2 KB (271 words) - 15:56, 27 June 2023
Redundans
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Qsiprep
[[Category:Software]] ...r processing diffusion-weighted MRI (dMRI) data. The main features of this software are:

3 KB (324 words) - 16:13, 17 October 2023
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
Jabba
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:21, 6 December 2019
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
Jo
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
Libvips
[[Category:Software]][[Category:Image Processing]]

2 KB (255 words) - 20:10, 26 May 2022
MZMine
[[Category:Software]][[Category:Spectroscopy]][[Category:Biology]]

3 KB (417 words) - 13:28, 7 July 2023
GenePainter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 21:20, 6 December 2019
Vaspkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:51, 1 June 2022
SNAP
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (372 words) - 20:42, 12 August 2022
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
Mireap
[[Category:Software]][[Category:Biology]]

2 KB (258 words) - 20:43, 18 August 2022
GUI Programs
[[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.

2 KB (390 words) - 14:42, 30 January 2023
EQtlBma
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (254 words) - 18:52, 12 August 2022
BWA-PSSM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 21:12, 6 December 2019
Raven
[[Category:Software]][[Category:assembly]]

2 KB (284 words) - 21:14, 20 November 2023
QuorUM
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 21:24, 6 December 2019
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
HipSTR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (340 words) - 14:50, 1 October 2020
HAPCUT
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (298 words) - 18:13, 15 August 2022
Slicer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...le platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform

3 KB (346 words) - 15:42, 8 April 2024
MAGeCK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:21, 6 December 2019
Tax4Fun
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 18:29, 4 February 2020
Ea-utils
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

4 KB (438 words) - 14:54, 15 August 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Newbler
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]][[Category:De Nov Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for

2 KB (305 words) - 16:17, 19 August 2022
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
Phynd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:13, 15 April 2020
Pbtranscript-tofu
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (324 words) - 20:11, 24 August 2022
Magpurify
[[Category:Software]] Each module in the software package was designed to be highly specific. This means that not all contami

3 KB (332 words) - 17:35, 24 May 2023
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
IDBA-UD
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (354 words) - 18:40, 15 August 2022
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
ANDI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 14:11, 20 February 2023
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
Finesse
[[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp

3 KB (347 words) - 00:01, 9 July 2020
GMP
[[Category:Software]][[Category:Library]]

3 KB (373 words) - 13:43, 3 June 2022
NtEdit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (316 words) - 21:23, 6 December 2019
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
Ibdne
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (308 words) - 17:05, 27 May 2022
ElPrep
[[Category:Software]][[Category:Phylogenetics]]

3 KB (345 words) - 21:20, 6 December 2019
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
DAWGPAWS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 21:20, 6 December 2019
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Category:Revision Control
[[Category:Software]][[Category:CLI]]

3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
Cp2k
[[Category:Software]][[Category:Chemistry]] CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, mole

3 KB (371 words) - 22:15, 26 August 2020
TransVar
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (335 words) - 18:16, 2 May 2022
ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...and 2) reduce reference bias as compared to mapping based approaches. The software is designed to work in situations where a whole-genome assembly is not the

3 KB (430 words) - 14:32, 12 August 2022
Monolix
[[Category:Software]][[Category:Modeling]][[Category:Biology]]

2 KB (287 words) - 11:57, 19 August 2022
OpenPIV-python
[[Category:Software]][[Category:Programming]][[Category:Imaging]] OpenPIV is open source Particle Image Velocimetry analysis software.

2 KB (291 words) - 12:23, 26 August 2022
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
ShapeMapper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (387 words) - 21:24, 6 December 2019
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
Category:Chemistry
[[Category:Software]]

34 members (0 subcategories, 0 files) - 21:45, 24 October 2022
MarkerMiner
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (385 words) - 19:47, 12 August 2022
GFF-Ex
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 22:10, 27 August 2020
Pyfasta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:58, 21 August 2022
Velocyto
[[Category:software]][[Category:biology]][[Category:sequencing]]

2 KB (275 words) - 00:33, 25 May 2023
Pygot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (248 words) - 21:24, 6 December 2019
Hpsandbox
[[Category:Software]]

2 KB (264 words) - 22:27, 1 February 2023
TRNAscan-Se
[[Category:Software]][[Category:biology]][[Category:NGS]] ...nce analysis, but is applicable to other DNAs as well. It applies our COVE software (see below) with a carefully built tRNA covariance model, while getting aro

3 KB (389 words) - 20:53, 12 August 2022

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