Search results

Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
Picard-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

6 KB (882 words) - 15:25, 27 January 2023
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
LoRMA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (301 words) - 14:34, 18 October 2022
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
SHRiMP
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril

2 KB (269 words) - 22:55, 21 August 2022
AGfusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:26, 26 August 2020
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
AMRPlusPlus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 21:19, 6 December 2019
HPG Computation
...open a support ticket to request RC to install the software in one of our software environments if it will be widely used. ==Using installed software==

5 KB (760 words) - 17:35, 22 April 2024
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
CryptoMiniSat
[[Category:Software]][[Category:Math]]

3 KB (325 words) - 14:13, 15 August 2022
P53MH
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (344 words) - 18:35, 10 June 2022
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
BEDOPS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (317 words) - 12:48, 15 August 2022
MMseqs2
[[Category:Software]][[Category:Phylogenetics]] ...ed in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good sca

3 KB (413 words) - 20:22, 2 October 2023
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
Asaq
[[Category:Software]][[Category:Alignment]][[Category:Sequencing]][[Category:Phylogenetics]] Please cite the following papers if you use Armadillo in your research and/or software.

3 KB (374 words) - 15:10, 1 June 2022
BIRDS
[[Category:Software]][[Category:Imaging]][[Category:Workflow Automation]][[Category:Utility]]

2 KB (263 words) - 13:01, 15 August 2022
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
RAPSearch
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (304 words) - 21:24, 6 December 2019
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
Ruby
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (272 words) - 18:55, 21 August 2022
RATTLE
[[Category:Software]]

2 KB (244 words) - 14:40, 28 July 2023
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
Trim Galore
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (512 words) - 20:52, 12 August 2022
Botorch
[[Category:Software]]

2 KB (288 words) - 18:11, 22 September 2022
DRAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:20, 6 December 2019
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
Category:Annotation
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:54, 22 August 2022
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
NWChem
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

3 KB (379 words) - 13:53, 6 June 2022
Meshroom
[[Category:Software]][[Category:Phylogenetics]] Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework.

2 KB (252 words) - 22:27, 8 September 2020
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
BamBam
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://udall-lab.byu.edu/Research/Software/BamBam.aspx}}

3 KB (456 words) - 18:00, 12 August 2022
Ms-dial
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

3 KB (385 words) - 13:32, 19 August 2022
Centrifuge
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (355 words) - 21:05, 6 December 2019
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
Taxtastic
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (263 words) - 15:45, 19 August 2022
Modules Basic Usage
...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...spective branches. E.g., if you need to load the module for the "espresso" software that was built with MVAPICH2 support using Intel Compiler version 11.1 you

5 KB (745 words) - 16:07, 13 February 2023
PAUDA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/pauda/}}

3 KB (367 words) - 17:03, 21 August 2022
Dropseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 13:29, 23 September 2020
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
CovNMR
[[Category:Software]][[Category:Biology]]

3 KB (350 words) - 15:55, 23 August 2022
Pbtk
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]]

2 KB (227 words) - 13:56, 7 April 2023
PHASE
[[Category:Software]][[Category:Phylogenetics]] In all cases, please specify the version of the software used, and any deviations from the default options.

2 KB (276 words) - 18:09, 21 August 2022
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
Pyfaidx
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (340 words) - 19:58, 21 August 2022
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
MuTect
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 16:33, 10 June 2022
Metacrast
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 17:58, 27 May 2022
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
Bowtie2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (465 words) - 14:48, 14 December 2022
Pyrpipe
[[Category:Software]][[Category:Phylogenetics]]

3 KB (311 words) - 15:22, 16 March 2020
SOAPaligner
[[Category:Software]][[Category:Phylogenetics]] ...(Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast

3 KB (334 words) - 21:24, 6 December 2019
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
VeryFastTree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 12 February 2021
RGIS
[[Category:Software]][[Category:Geospatial]] ...software. RiverGIS is not intended to replace or compete with existing GIS software. It was designed to complement existing GIS packages (like ARC/INFO) and pr

3 KB (370 words) - 20:27, 24 August 2022
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
VarDictJava
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 17:23, 22 August 2022
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
ITK-SNAP
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] SNAP is a software application used to segment structures in 3D medical images. It provides se

3 KB (397 words) - 19:23, 12 August 2022
RiboCode
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 17:44, 20 May 2020
Dadi
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 21:21, 6 December 2019
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
Booster
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:11, 6 December 2019
CRISPResso2
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]][[Category:Biology]] CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome ed

2 KB (282 words) - 13:25, 11 October 2022
FEELnc
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 18:53, 10 July 2020
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
RGI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 21:24, 6 December 2019
Pbalign
[[Category:Software]][[Category:biology]]

2 KB (243 words) - 20:15, 12 August 2022
SEQuel
[[Category:Software]][[Category:NGS]][[Category:Biology]]

3 KB (382 words) - 22:39, 21 August 2022
MEGAHIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (367 words) - 18:31, 18 August 2022
Orange3
[[Category:Software]][[Category:Data Mining]] Orange is a component-based data mining software. It includes a range of data visualization, exploration, preprocessing and

3 KB (309 words) - 17:08, 10 June 2022
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
Tracula
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]

3 KB (342 words) - 20:51, 12 August 2022
Ribotricer
[[Category:Software]]

2 KB (245 words) - 18:41, 2 October 2023
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
PhiSpy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (291 words) - 21:23, 6 December 2019
Grib api
[[Category:Software]][[Category:Compiler]][[Category:Library]] |{{#vardefine:url|https://software.ecmwf.int/wiki/display/GRIB}}

2 KB (278 words) - 17:22, 15 August 2022
SomaticSeq
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 00:06, 22 August 2022
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Unanimity
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Compiler]]

2 KB (268 words) - 17:48, 15 August 2022
Crass
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (300 words) - 14:02, 15 August 2022
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
UDUNITS
[[Category:Software]][[Category:Library]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/udunits/}}

2 KB (279 words) - 17:17, 22 August 2022
Fastsimcoal
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:url|http://cmpg.unibe.ch/software/fastsimcoal2/}}

4 KB (481 words) - 15:25, 15 August 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
CellProfiler
[[Category:Software]][[Category:Phylogenetics]] CellProfiler is free open-source software designed to enable biologists without training in computer vision or progra

8 KB (910 words) - 21:29, 21 December 2022
SuperCRUNCH
[[Category:Software]][[Category:Phylogenetics]]

4 KB (499 words) - 14:47, 11 May 2020
DeNoGAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (272 words) - 21:20, 6 December 2019
Tbprofiler
[[Category:Software]]

3 KB (312 words) - 21:31, 10 February 2023
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
Lambda
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
DVGfinder
[[Category:Software]]

3 KB (319 words) - 13:59, 31 July 2023
KMOS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 14:35, 4 September 2020
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
BRANCH
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]] BRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA co

3 KB (309 words) - 13:09, 15 August 2022
TACO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 18:53, 1 June 2022
Pigz
[[Category:Software]][[Category:Compression]]

2 KB (245 words) - 21:23, 6 December 2019
Pbmm2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 20:08, 31 May 2022
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Vcfanno
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (291 words) - 21:29, 6 December 2019
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
Category:Climate
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:34, 24 August 2022
Mixmogam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 22:42, 8 September 2020
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
TotalView
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (335 words) - 12:02, 26 August 2022
Computer Vision
This page describes the collection of Computer Vision software on HiperGator. Computer vision is a crucial field of artificial intelligenc ...ow|tensorflow]] or ngc-tensorflow''': TensorFlow is a free and open-source software library for machine learning and artificial intelligence. '''ngc-tensorFlow

4 KB (563 words) - 20:59, 21 December 2022
Wgsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (343 words) - 21:29, 6 December 2019
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
Brkraw
[[Category:Software]]

2 KB (287 words) - 13:35, 24 October 2022
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
GramCluster
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (280 words) - 16:57, 10 June 2022
Alfred
[[Category:Software]]

3 KB (294 words) - 19:29, 14 November 2022
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
ImageMagick
[[Category:Software]][[Category:Imaging]] ImageMagick® is a software suite to create, edit, compose, or convert bitmap images. It can read and w

3 KB (380 words) - 18:46, 15 August 2022
Orthograph
[[Category:Software]][[Category:Biology]]

2 KB (261 words) - 18:00, 19 August 2022
Astropy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 15:18, 12 August 2022
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
PyRosetta
[[Category:Software]][[Category:biology]][[Category:structure]][[Category:modeling]]

2 KB (267 words) - 21:24, 6 December 2019
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
Spec2nii
[[Category:Software]][[Category:Phylogenetics]]

3 KB (359 words) - 13:42, 3 June 2022
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
Geant4
[[Category:Software]][[Category:Physics]]

3 KB (416 words) - 19:34, 30 November 2022
VIRULIGN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 19:53, 20 April 2020
Longshot
[[Category:Software]][[Category:Genomics]]

3 KB (352 words) - 20:04, 26 July 2023
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
AMP
[[Category:Software]][[Category:phylogenetics]]

2 KB (271 words) - 16:08, 6 June 2022
EDirect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (357 words) - 14:55, 15 August 2022
CHARMM
[[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 13:51, 6 June 2022
DosageConvertor
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 15:04, 10 June 2022
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
Mitohifi
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]]

3 KB (312 words) - 17:01, 21 July 2022
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
Swarm
[[Category:Software]][[Category:Data Science]]

2 KB (296 words) - 16:49, 21 August 2022
Radorgminer
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

3 KB (297 words) - 21:55, 6 July 2022
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
HelitronScanner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
GeneMark-ES
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (303 words) - 16:44, 27 May 2022
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
Rmats2sashimiplot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 21:56, 21 August 2022
OpenBLAS
[[Category:Software]][[Category:Programming]][[Category:Library]] ...tions for specific processor types. It is developed at the Lab of Parallel Software and Computational Science, ISCAS.

2 KB (291 words) - 18:45, 2 June 2022
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
3d-dna
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (328 words) - 17:51, 10 June 2022
CRISPRanalyzer
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (294 words) - 14:12, 15 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
Circleator
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:18, 6 December 2019
IM and IMa
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software}}

2 KB (299 words) - 18:44, 15 August 2022
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
Xerces
[[Category:Software]][[Category:phylogenetics]]

3 KB (306 words) - 21:29, 6 December 2019
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
Nipype
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] neuroimaging software and facilitates interaction between these packages

3 KB (348 words) - 20:07, 12 August 2022
GOMAP
[[Category:Software]][[Category:Biology]]

2 KB (263 words) - 17:17, 15 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
MIA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (347 words) - 19:52, 12 August 2022
Hgraph2graph
[[Category:Software]] The scripts for this software should be execytes using the path from the HPC_HGRAPH2GRAPH_BIN environment

2 KB (279 words) - 17:06, 14 June 2022
MODELLER
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]]

3 KB (364 words) - 19:53, 12 August 2022
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
Vcf-validator
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 17:27, 22 August 2022
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
Cytoscape
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] Cytoscape is an open source software platform for visualizing molecular interaction networks and biological path

3 KB (334 words) - 14:23, 15 August 2022
Ugtm
[[Category:Software]][[Category:Statistics]][[Category:Modeling]]

2 KB (247 words) - 16:58, 6 June 2022
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
Nvidia CUDA Toolkit
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Graphics]][[Categor ...cs processing unit (GPU). With millions of CUDA-enabled GPUs sold to date, software developers, scientists and researchers are finding broad-ranging uses for G

4 KB (543 words) - 13:44, 20 November 2023
READemption
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:58, 1 June 2022
DiCal2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (245 words) - 21:21, 6 December 2019
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Trelis
[[Category:Software]][[Category:Math]] ...for complex FEA and CFD simulation. It is based on the time-proven CUBIT™ software from Sandia National Laboratories. For more than two decades, csimsoft and

2 KB (291 words) - 17:05, 22 August 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
TreePL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...h provides performance comparable with or better than that of the existing software including r8s, PATHd8 and BEAST.

3 KB (316 words) - 20:51, 12 August 2022
Bruker2nifti
[[Category:Software]][[Category:Phylogenetics]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]

3 KB (300 words) - 15:31, 3 June 2022
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
Subversion
[[Category:Software]][[Category:Revision Control]]

2 KB (277 words) - 20:07, 10 June 2022
Topd
[[Category:Software]][[Category:Phylogenetics]] ...'''Split, Quartets & Triplets''', and '''Disagree'''. Each option of this software is also complemented with a random analysis to test the null hypothesis tha

3 KB (439 words) - 21:24, 31 August 2023
Erpin
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://rna.igmors.u-psud.fr/Software/erpin.php}}

3 KB (377 words) - 21:21, 6 December 2019
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
Scons
[[Category:Software]][[Category:Programming]] ...on scripts. This gives SCons many powerful capabilities not found in other software build tools.

2 KB (293 words) - 21:24, 6 December 2019
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
Genome STRiP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/genomestrip/}}

3 KB (446 words) - 19:28, 10 June 2022
Edyeet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 19:43, 4 November 2020
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
OpenCV
[[Category:Software]][[Category:Library]]

2 KB (283 words) - 21:31, 6 December 2019
MafFilter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 17:01, 24 February 2020
CisTEM
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://cistem.org/software}}

3 KB (349 words) - 13:35, 15 August 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
OpenMPI
[[Category:Software]][[Category:Programming]][[Category:Library]] ...the best MPI library available. Open MPI offers advantages for system and software vendors, application developers and computer science researchers.

3 KB (337 words) - 19:02, 21 July 2023
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
MutSig
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (262 words) - 15:08, 10 June 2022
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
TESS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]]

3 KB (296 words) - 16:26, 22 August 2022
SortaDate
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:42, 4 May 2020
Rust
[[Category:Software]][[Category:Programming]]

2 KB (285 words) - 21:24, 6 December 2019
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
AntiSMASH
[[Category:Software]][[Category:Phylogenetics]]

3 KB (409 words) - 21:11, 6 December 2019
P7zip
[[Category:Software]][[Category:Utility]]

2 KB (254 words) - 17:34, 15 August 2022
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
Piggy
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (271 words) - 20:23, 12 August 2022
PHYUTILITY
[[Category:Software]][[Category:biology]]

2 KB (296 words) - 20:22, 12 August 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
CASM
[[Category:Software]][[Category:Physics]] CASM is an open source software package designed to perform first-principles statistical mechanical studies

4 KB (453 words) - 13:20, 15 August 2022
PhyloPhlAn2
[[Category:Software]][[Category: Phylogenetics]] ...different phylogenetic analysis) where the user can specify the preferred software to be used to perform each step of the pipeline. In addition, several param

3 KB (375 words) - 17:57, 9 June 2022
Libvips
[[Category:Software]][[Category:Image Processing]]

2 KB (255 words) - 20:10, 26 May 2022
Blast2GO CLI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (282 words) - 20:19, 24 August 2022
ALFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 21:33, 26 August 2020
Hmmer2go
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (280 words) - 18:18, 15 August 2022
Seekdeep
[[Category:Software]]

2 KB (281 words) - 17:03, 24 July 2023
NetLogo
[[Category:Software]][[Category:modeling]]

2 KB (276 words) - 21:22, 6 December 2019
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
SpeedSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 22:29, 9 December 2020
MANTA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (432 words) - 19:27, 10 June 2022
SMC++
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

2 KB (268 words) - 23:52, 21 August 2022
GUI Programs
[[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.

2 KB (390 words) - 14:42, 30 January 2023
GLPK
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|http://www.gnu.org/software/glpk/glpk.html}}

2 KB (272 words) - 17:11, 15 August 2022
DeepARG
[[Category:Software]][[Category:Phylogenetics]] ...software requires external data that has been removed from the web and the software has been abandoned by its author. It is not functional.

3 KB (320 words) - 21:58, 13 February 2023
RNAFramework
[[Category:Software]]

2 KB (238 words) - 21:57, 21 August 2022
Seqscreen
[[Category:Software]]

2 KB (245 words) - 14:54, 15 August 2022
LACHESIS
[[Category:Software]][[Category:Phylogenetics]] LACHESIS: A software tool to measure the thread of life.

2 KB (263 words) - 21:21, 6 December 2019
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
Bamtofastq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 13:56, 8 March 2021
MCScanX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...MCScan algorithm for detection of synteny and collinearity and extends the software by incorporating 15 utility programs for display and further analyses.

3 KB (350 words) - 21:21, 6 December 2019
HAPCUT
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (298 words) - 18:13, 15 August 2022
Scalpel
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (239 words) - 22:07, 21 August 2022
IMA3
[[Category:Software]][[Category:Molecular Dynamics]]

3 KB (317 words) - 17:02, 6 June 2022
CellRanger-ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] ...ardefine:url|https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/overview/welcome}}

3 KB (288 words) - 18:24, 12 August 2022
Metabin
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

4 KB (588 words) - 19:25, 18 August 2022
UMICollapse
[[Category:Software]]

2 KB (270 words) - 15:53, 16 November 2022
NanoPlot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 13:50, 19 August 2022
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
Trim isoseq polya
[[Category:Software]]

2 KB (298 words) - 15:04, 19 August 2022
Category:Documentation
[[Category:Software]]

12 members (1 subcategory, 0 files) - 19:55, 22 August 2022
Newbler
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]][[Category:De Nov Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for

2 KB (305 words) - 16:17, 19 August 2022
OrthoFinder
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.stevekellylab.com/software/orthofinder}}

2 KB (276 words) - 17:58, 19 August 2022
METANNOT
[[Category:Software]]

2 KB (241 words) - 19:27, 18 August 2022
Ovito
[[Category:Software]][[Category:Programming]]

3 KB (333 words) - 15:29, 1 December 2023
Preseq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://smithlab.usc.edu/plone/software/librarycomplexity}}

3 KB (303 words) - 20:26, 12 August 2022
Alder
[[Category:Software]][[Category:biology]][[Category:genomics]] The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making infe

3 KB (305 words) - 12:33, 12 August 2022
MPBoot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (292 words) - 21:21, 6 December 2019
IDBA-UD
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (354 words) - 18:40, 15 August 2022
BMGE
[[Category:Software]] ...teur.fr/en/publication/bmge-block-mapping-and-gathering-with-entropy-a-new-software-for-selection-of-phylogenetic-informative-regions-from-multiple-sequence-al

3 KB (407 words) - 13:04, 15 August 2022
TaxMaps
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Genomics]]

3 KB (321 words) - 15:45, 19 August 2022
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
Quantas
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (247 words) - 20:29, 12 August 2022
FLAIR
[[Category:Software]][[Category:Genomics]]

3 KB (305 words) - 18:34, 12 July 2023
Helixer
[[Category:Software]]

2 KB (254 words) - 17:38, 19 April 2024
Bloomfiltertrie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:18, 6 December 2019
RelocaTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 20:32, 14 January 2020
UFRC environment module
[[Category:Software]]

4 KB (606 words) - 15:57, 23 August 2023
Cactus
[[Category:Software]][[Category:Genomics]]

3 KB (298 words) - 21:30, 18 March 2024
RHash
[[Category:Software]][[Category:Programming]]

2 KB (249 words) - 21:49, 21 August 2022
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
ANTs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 16:02, 4 April 2022
UFCG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (431 words) - 17:41, 20 September 2023
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
Metaphlan
[[Category:Software]][[Category: Phylogenetics]]

2 KB (258 words) - 15:21, 26 August 2022
FastQ-Screen
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 16:05, 16 March 2020
OpenSlide
[[Category:Software]][[Category:Imaging]]

2 KB (248 words) - 21:22, 6 December 2019
Haploflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (287 words) - 20:31, 3 January 2022
PopLDdecay
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:22, 6 December 2019
Cantera
[[Category:Software]][[Category:Biology]][[Category:Physics]] Cantera is a suite of object-oriented software tools for problems involving

3 KB (308 words) - 13:19, 15 August 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
Amber Job Sample Scripts
[[Category:Software]]

1 KB (171 words) - 21:18, 5 December 2022
GARLI
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:exe|1}} 

3 KB (485 words) - 16:53, 15 August 2022
DCMTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]][[Category:Neuroscience]] ...+. It comes in complete source code and is made available as "open source" software.

3 KB (304 words) - 20:31, 10 June 2022
GWAMA
[[Category:Software]][[Category:Phylogenetics]] ...medcentral.com/articles/10.1186/1471-2105-11-288 Magi R, Morris AP: GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics 2010, 11:288.

3 KB (322 words) - 13:33, 26 May 2020
SeCaPr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 21:24, 6 December 2019
Bmtagger
[[Category:Software]][[Category:Genomics‏‎]][[Category:Biology]]

2 KB (251 words) - 13:05, 15 August 2022
Coevol
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (399 words) - 18:37, 12 August 2022
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
Dragmap
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]][[Category:Biology]] Dragmap is the Dragen mapper/aligner Open Source Software.

2 KB (249 words) - 14:47, 15 August 2022
DynamicDBG
[[Category:Software]][[Category:Phylogenetics]] ...membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and n

3 KB (312 words) - 21:20, 6 December 2019
PATHd8
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (305 words) - 21:22, 6 December 2019
Sharing Within A Cluster
...in their storage trees. This is the most appropriate way to share data and software among group members.

4 KB (682 words) - 15:25, 13 July 2023
Sisl
[[Category:Software]][[Category:Physics]][[Category:Structure]]

3 KB (320 words) - 23:01, 21 August 2022
CellRanger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell/software/pipelines/latest/what-is-cell-ranger}}

2 KB (294 words) - 18:24, 12 August 2022
Ansysem
[[Category:Software]][[Category:Physics]]

2 KB (240 words) - 16:11, 23 March 2023
Clann
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] It is also important for the user to know that the software is designed to

3 KB (438 words) - 18:30, 12 August 2022
Chipyard
[[Category:Software]][[Category:Simulation]] ...FPGA-accelerated simulation (FireSim), automated VLSI flows (Hammer), and software workload generation for bare-metal and Linux-based systems (FireMarshal). C

3 KB (360 words) - 14:30, 11 October 2022
Ranger
[[Category:Software]][[Category:File Management]]

2 KB (284 words) - 13:54, 21 October 2022
Fastp
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (256 words) - 15:23, 15 August 2022
Guile
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/guile/}}

2 KB (293 words) - 18:08, 15 August 2022
Sickle
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (551 words) - 22:56, 21 August 2022
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
REMORA
[[Category:Software]][[Category:Performance Analysis]][[Category:Performance Analysis]]

3 KB (330 words) - 20:39, 24 August 2022
ArrayFire
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 14:52, 12 August 2022
IRAP
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (296 words) - 20:10, 24 August 2022
SpinalCordToolbox
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:43, 1 June 2022
FLEA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 22:01, 27 August 2020
Squigglekit
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

2 KB (254 words) - 15:55, 22 August 2022
PhyloBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:20, 12 August 2022
Recycler
[[Category:Software]]

3 KB (297 words) - 14:21, 11 October 2022
Mawk
[[Category:Software]][[Category:Language]]

2 KB (252 words) - 19:05, 6 June 2022
PlantTribes
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 13:29, 4 October 2021
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
SPAdes
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://cab.spbu.ru/software/spades/}}

2 KB (280 words) - 15:47, 22 August 2022
OpenSim
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 17:57, 19 August 2022
SQLite
[[Category:Software]][[Category:Database]]

3 KB (339 words) - 13:32, 13 June 2022
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
Fit-sne
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:34, 27 May 2022
QT
[[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} 

2 KB (257 words) - 20:57, 21 August 2022
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
PhotoScan
[[Category:Software]][[Category:Image Processing]] Agisoft PhotoScan is a stand-alone software product that performs photogrammetric processing of digital images and gene

3 KB (316 words) - 19:57, 10 January 2023
Flexbar
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

2 KB (285 words) - 16:45, 15 August 2022
GFam
[[Category:Software]]

3 KB (339 words) - 17:06, 15 August 2022
Vasp
[[Category:Software]][[Category:Chemistry]] {{note|VASP is licensed software and its use is limited to those users who have been approved by the license

4 KB (538 words) - 22:38, 31 March 2024
MACS
[[Category:Software]][[Category:ChIP-Seq]][[Category:Biology]] |{{#vardefine:exe|}} 

3 KB (384 words) - 19:47, 12 August 2022
AStalavista
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (284 words) - 14:56, 12 August 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
Genblastg
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (306 words) - 18:19, 5 February 2024
VASP
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

4 KB (550 words) - 19:00, 21 July 2023
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
DASTool
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 21:21, 6 December 2019
RSEG
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (308 words) - 21:58, 21 August 2022
Snakemake
[[Category:Software]][[Category:Workflow Automation]][[Category:Biology]] ...inition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

3 KB (385 words) - 18:51, 15 August 2022
Eddy-squeeze
[[Category:Software]]

2 KB (280 words) - 14:12, 21 October 2022
BWA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (317 words) - 18:22, 12 August 2022
Megraft
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://microbiology.se/software/megraft/}}

3 KB (293 words) - 18:35, 18 August 2022
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
Mistral AI
[[Category:Software]]

3 KB (316 words) - 18:50, 13 May 2024
STAR-CCM+
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 16:01, 22 August 2022
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
PureCLIP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
YAGO
[[Category:Software]]

4 KB (480 words) - 17:13, 15 December 2022
Pyhdf
[[Category:Software]][[Category:library]] |{{#vardefine:url|http://hdfeos.org/software/pyhdf.php}}

2 KB (267 words) - 15:25, 3 June 2022
Category:Revision Control
[[Category:Software]][[Category:CLI]]

3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
OCaml
[[Category:Software]][[Category:Language]][[Category:Programming]]

2 KB (240 words) - 17:27, 19 August 2022
TransVar
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (335 words) - 18:16, 2 May 2022
CLHEP
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 14:10, 13 June 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
WarpedLMM
[[Category:Software]][[Category:Modeling]]

2 KB (287 words) - 19:23, 1 June 2022
CryoSPARC
[[Category:Software]] CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug d

3 KB (383 words) - 18:05, 10 May 2024
ASE-ANI
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (303 words) - 14:55, 12 August 2022
Emacs
[[Category:Software]][[Category:Programming]][[Category:Language]] |{{#vardefine:url|https://www.gnu.org/software/emacs/download.html}}

3 KB (407 words) - 14:59, 15 August 2022
Category:Chemistry
[[Category:Software]]

34 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Xesmf
[[Category:Software]][[Category:Math]][[Category:Climate]]

2 KB (248 words) - 20:05, 24 August 2022
Pyfasta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:58, 21 August 2022
WOMBAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 21:29, 6 December 2019
HapQTL
[[Category:Software]][[Category:Biology]] This software performs association testing between local haplotypes and phenotypes at eac

2 KB (247 words) - 18:15, 15 August 2022
IGTP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Oliver Eulenstein, "iGTP: A software package for large-scale gene tree

3 KB (318 words) - 19:06, 12 August 2022
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
Mashtree
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762]

2 KB (280 words) - 13:30, 15 August 2022
DeepLabCut
[[Category:Software]][[Category:Phylogenetics]]

3 KB (385 words) - 21:20, 6 December 2019
Genesum
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (277 words) - 21:21, 6 December 2019
HyPhy
[[Category:Software]][[Category:Biology]][[Category:Genomics]] HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogene

3 KB (380 words) - 18:36, 15 August 2022
3PCLR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (307 words) - 20:35, 11 August 2022
ORCA
[[Category:Software]][[Category:Chemistry]][[Category:Structure]]

3 KB (399 words) - 14:03, 2 April 2024
HISAT2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Alignment]] |{{#vardefine:url|https://ccb.jhu.edu/software/hisat2/index.shtml}}

3 KB (399 words) - 19:31, 24 August 2022
OpenPose
[[Category:Software]][[Category:Programming]][[Category:Library]]

4 KB (497 words) - 18:44, 30 January 2023
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
AWSCLI
[[Category:Software]][[Category:Utility]]

2 KB (267 words) - 15:26, 12 August 2022
TreeShrink
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:29, 6 December 2019
IgBLAST
[[Category:Software]][[Category:Biology]]

3 KB (338 words) - 19:06, 12 August 2022
ProSplign
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 17:08, 1 June 2022
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
MetaCherchant
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (269 words) - 21:22, 6 December 2019
Staden
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (254 words) - 15:59, 22 August 2022
P4vasp
[[Category:Software]][[Category:Visualization]]

2 KB (230 words) - 18:01, 19 August 2022
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
Graphaligner
[[Category:Software]][[Category:Genomics]]

2 KB (262 words) - 21:48, 12 January 2023
GSNP
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://jil.genomics.org.cn/index.php/en/software/gsnp.html}}

3 KB (459 words) - 17:27, 15 August 2022
Hacdivsel
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (280 words) - 22:20, 10 October 2022
Maxbin
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning proce

3 KB (364 words) - 17:56, 27 May 2022
Ima2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software#IMa2}}

2 KB (265 words) - 18:45, 15 August 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
Category:Search
[[Category:Software]]

3 members (0 subcategories, 0 files) - 19:50, 22 August 2022
Git
[[Category:Software]][[Category:Revision Control]]

2 KB (301 words) - 17:09, 15 August 2022
GeneSeqer
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (257 words) - 18:58, 12 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
Circtools
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the circtools software

3 KB (433 words) - 19:03, 27 January 2023
Pandoc
[[Category:Software]][[Category:Utility]]

3 KB (300 words) - 16:31, 21 August 2022
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
RAxML-NG
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 21:34, 21 August 2022
Memory: Shared vs Distributed
...he processors can access other processor's memory only through network. In software sense, it means each processor only can see local machine memory directly a

2 KB (346 words) - 19:44, 16 January 2023
Nemo
[[Category:Software]][[Category:Machine Learning]]

2 KB (290 words) - 17:58, 15 August 2022
TrackVis/DTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]] TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imag

3 KB (418 words) - 14:56, 18 October 2022
Category:Biology
[[Category:Research]][[Category:Software]]

985 members (9 subcategories, 0 files) - 17:21, 3 June 2022
GTAHunter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 16:39, 27 May 2022
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Cowast
Coupled Ocean-Atmosphere-Wave-Sediment Trnaspost (COWAST) is public domain software developed by the United States Geological Services. The COWAST modeling sys ...urning on the HDF5 support. The build_coawst.sh, configures and builds the software, and the binary coawstM is installed in the top-level directory.

3 KB (443 words) - 13:28, 27 March 2024
Category:Python
[[Category:Software]]

3 members (0 subcategories, 0 files) - 21:56, 1 February 2014
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
Mfannot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
RoseTTAFold
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 21:29, 20 July 2021
Schrodinger Suite
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (257 words) - 15:30, 19 August 2022
Bowtie
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (443 words) - 13:06, 15 August 2022
Trinotate
[[Category:Software]][[Category:Biology]] Additional software included in this module:

3 KB (344 words) - 20:29, 7 December 2023
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Razers3
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 16:50, 10 June 2022
DAKOTA
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

4 KB (484 words) - 18:26, 14 December 2022
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
MSINGS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:21, 6 December 2019
BIDSCOIN
[[Category:Software]][[Category:Neuroscience]]

2 KB (263 words) - 15:20, 14 March 2023
GraPhlAn
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and p

2 KB (284 words) - 21:21, 6 December 2019
CD-HIT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (354 words) - 18:24, 12 August 2022
AEGeAn
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (287 words) - 16:31, 10 June 2022
Blender
[[Category:Software]][[Category:Graphics]]

2 KB (295 words) - 13:03, 15 August 2022
MRIcron
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (329 words) - 20:33, 24 August 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
LocusZoom
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 21:21, 6 December 2019
Snpflip
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (247 words) - 00:05, 22 August 2022
Biodiverse
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 6 December 2019
GapCloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (264 words) - 16:52, 15 August 2022
R libraries
[[Category:Software]]

265 bytes (30 words) - 13:59, 30 June 2017
Plasflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (292 words) - 20:17, 31 May 2022
PhyloSift
[[Category:Software]][[Category:biology]][[Category:genomics]][[Category:phylogenetics]] hyloSift is a suite of software tools to conduct phylogenetic

2 KB (255 words) - 15:45, 19 August 2022
Category:Library
[[Category:Software]] Libraries available for use by other software and for development.

87 members (0 subcategories, 0 files) - 04:37, 29 June 2012
Supernova
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]] |{{#vardefine:url|https://support.10xgenomics.com/de-novo-assembly/software/}}

3 KB (306 words) - 16:55, 10 June 2022
BinSanity
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (288 words) - 16:54, 10 June 2022
RepeatModeler
[[Category:Software]][[Category:Biology]]

3 KB (297 words) - 20:32, 12 August 2022
EMMAX
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]]

3 KB (304 words) - 15:06, 15 August 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020
Magus
[[Category:Software]][[Category:Sequencing]][[Category:Alignment]]

3 KB (327 words) - 17:51, 16 March 2022
PB-Assembly
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] pb-assembly is a collection of PacBio software including the following applications and their dependencies:

2 KB (269 words) - 20:11, 24 August 2022
GlimmerHMM
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|http://ccb.jhu.edu/software/glimmerhmm/}}

3 KB (334 words) - 17:09, 15 August 2022
Amphora2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

3 KB (333 words) - 17:35, 10 June 2022
Wgd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 19:52, 27 May 2022
Delly
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (291 words) - 16:46, 10 June 2022
IGV
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://software.broadinstitute.org/software/igv/}}

2 KB (276 words) - 18:42, 15 August 2022
Zorro
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (284 words) - 17:54, 22 August 2022
Automlsa2
[[Category:Software]]

2 KB (266 words) - 15:25, 12 August 2022
FDSTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:34, 27 August 2020
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
Msfinder
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] ...omputational MS/MS fragmentation and structure elucidation using MS-FINDER software. Analytical Chemistry 88, 7946-7958, 2016.]

3 KB (290 words) - 13:32, 19 August 2022
LEMON
[[Category:Software]][[Category:Library]]

2 KB (268 words) - 15:41, 6 June 2022
Category:Applications
#REDIRECT [[Category:Software]]

0 members (0 subcategories, 0 files) - 17:26, 3 June 2022
Whiteboxtools
[[Category:Software]][[Category:Phylogenetics]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

3 KB (408 words) - 17:43, 22 August 2022
Chewbbaca
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (346 words) - 15:58, 20 October 2023
DeconSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (299 words) - 17:00, 10 June 2022
GraphMap2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 19:06, 21 July 2022
IsoSeq3
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (295 words) - 20:10, 24 August 2022
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
QD
[[Category:Software]][[Category: Library]][[Category: Math]][[Category:Compiler]]

2 KB (271 words) - 17:47, 15 August 2022
Ont fast5 api
[[Category:Software]][[Category:Phylogenetics]] Oxford Nanopore Technologies fast5 API software

2 KB (238 words) - 17:49, 19 August 2022
Newick utils
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 14:10, 1 September 2021
FRAPOSA
[[Category:Software]][[Category:Phylogenetics]] ...es by using principle component analysis (PCA) with a reference panel. The software accompanies this paper. For any questions, please contact daiweiz at umich

2 KB (284 words) - 14:19, 16 September 2021
ProtHint
[[Category:Software]]

3 KB (329 words) - 20:27, 12 August 2022
Category:De Novo
[[Category:Software]]

3 members (0 subcategories, 0 files) - 19:55, 22 August 2022
TRF
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (442 words) - 20:52, 12 August 2022
Freesasa
[[Category:Software]][[Category:biology]][[Category:Molecular Dynamics]]

2 KB (276 words) - 16:49, 15 August 2022
Nuke
[[Category:Software]]

2 KB (277 words) - 13:47, 19 July 2023
Flopp
[[Category:Software]][[Category:Biology]][[Category:Population Biology]] flopp is a software package for single individual haplotype phasing of polyploid organisms from

2 KB (286 words) - 18:35, 1 December 2023
Valgrind
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (275 words) - 21:31, 6 December 2019
Cammiq
[[Category:Software]][[Category:Biology]][[Category:Genomics]] CAMMiQ is a software tool for microbial identification and quantification.

2 KB (281 words) - 21:39, 14 June 2023
Methylpy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 21:21, 6 December 2019
EIGENSOFT
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html}}

3 KB (295 words) - 14:58, 15 August 2022
Catch
[[Category:Software]]

3 KB (422 words) - 18:23, 12 August 2022
Resistome
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 21:46, 21 August 2022
Seqmagick
[[Category:Software]][[Category:Biology]]

2 KB (269 words) - 22:35, 21 August 2022
POV-Ray
[[Category:Software]] ...uter graphics. POV-Ray is Free Software (as per the definition of the Free Software Foundation) as its source code is licensed under the Affero General Public

2 KB (269 words) - 19:17, 27 May 2022
Badread
[[Category:Software]][[Category:Phylogenetics]] ...RR. Badread: simulation of error-prone long reads. Journal of Open Source Software. 2019;4(36):1316. doi:10.21105/joss.01316.]

3 KB (363 words) - 20:47, 24 September 2020
Fastv
[[Category:Software]][[Category:Bioinformatics]][[Category:Sequencing]]

3 KB (327 words) - 20:08, 19 April 2024
Wannier90
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (268 words) - 21:31, 6 December 2019
EggNOG-mapper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 19:29, 6 December 2021
Galaxy Data Import
...he 755 mode for the directory and 644 for the files either from within the software you used for transferring the files or by logging into HPC and running the

4 KB (644 words) - 17:24, 15 December 2022
MONAI label
[[Category:Software]][[Category:Healthcare]]

3 KB (377 words) - 11:56, 19 August 2022
Repeatscout
[[Category:Software]][[Category:biology]]

2 KB (288 words) - 21:24, 6 December 2019
Category:Programming
[[Category:Software]]

77 members (0 subcategories, 0 files) - 21:45, 24 October 2022
CNVkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:50, 15 August 2022
Nonpareil
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 15:48, 17 November 2020
RevBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (267 words) - 16:04, 10 June 2022
Bamstats
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (251 words) - 18:01, 12 August 2022
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Nanolyse
[[Category:Software]]

2 KB (260 words) - 19:24, 7 September 2022
CCMetagen
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 22:45, 3 January 2022
Grf
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (278 words) - 17:21, 15 August 2022
Capnp
[[Category:Software]][[Category:Compiler]]

2 KB (288 words) - 13:20, 15 August 2022
BBMap
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

3 KB (349 words) - 17:55, 10 June 2022
Deepsig
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 04:24, 6 December 2022
CheckM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (327 words) - 18:27, 12 August 2022
Firefox
[[Category:Software]][[Category:Linux]]

3 KB (318 words) - 16:28, 19 October 2022
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
Minia
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] It is multi-k, to aim for high contiguity. Similar software: MEGAHIT, metaSPAdes.

2 KB (285 words) - 13:31, 15 August 2022
DDT
[[Category:Software]][[Category:Utility]]

5 KB (754 words) - 19:24, 30 October 2023
AGAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (346 words) - 22:01, 15 July 2020
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
TRANSIT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:29, 6 December 2019
Ampligraph
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 14:44, 10 July 2023
Maq
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (377 words) - 19:47, 12 August 2022
IRFinder
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

2 KB (244 words) - 14:59, 10 June 2022
Randfold
[[Category:Software]][[Category:Biology]]

2 KB (262 words) - 21:29, 21 August 2022
VSearch
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (381 words) - 19:01, 10 June 2022
QDD
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

4 KB (485 words) - 20:08, 21 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
MetaCompare
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 21:21, 6 December 2019
TNTBLAST
[[Category:Software]][[Category:Biology]] TNTBLAST (ThermonucleotideBLAST) is a software program for searching a target database of nucleic acid sequences using an

3 KB (385 words) - 20:08, 2 June 2022
AMBER
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

5 KB (736 words) - 20:09, 5 February 2024
PRSice
[[Category:Software]][[Category:Phylogenetics]] PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic

2 KB (287 words) - 14:26, 1 February 2021

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