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pathd8 website  

A program for phylogenetic dating of large trees without a molecular clock

Environment Modules

Run module spider pathd8 to find out what environment modules are available for this application.

System Variables

  • HPC_PATHD8_DIR - installation directory
  • HPC_PATHD8_BIN - executable directory


If you publish research that uses pathd8 you have to cite it as follows:

The program PATHd8 is based on the manuscript

  • Estimating divergence times in large phylogenetic trees by Tom Britton, Cajsa Lisa Anderson, David Jacquet, Samuel Lundqvist and Kåre Bremer, in Systematic Biology 56:5, pp 741 - 752 .
  • Britton, T., B. Oxelman, A. Vinnersten, and K. Bremer. 2002. Phylogenetic dating with confidence intervals using mean path lengths. Molecular Phylogenetics and Evolution 24:58-65.