The DeconSeq tool can be used to automatically detect and efficiently remove sequence contaminations from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface.
module spider deconseq to find out what environment modules are available for this application.
- HPC_DECONSEQ_DIR - installation directory
This module also includes PrinSeq.
If you publish research that uses deconseq you have to cite it as follows: