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repeatmodeler website  

RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.

Environment Modules

Run module spider repeatmodeler to find out what environment modules are available for this application.

System Variables

  • HPC_REPEATMODELER_DIR - installation directory