Search results

ESPRIT
[[Category:Software]][[Category:Biology]]

4 KB (460 words) - 15:10, 15 August 2022
MODELTEST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:18, 10 June 2022
Ranger
[[Category:Software]][[Category:File Management]]

2 KB (284 words) - 13:54, 21 October 2022
TraCeR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:40, 22 August 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
Genesum
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (277 words) - 21:21, 6 December 2019
Biodiverse
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 6 December 2019
Prokka
[[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.prokka.shtml}}

2 KB (297 words) - 19:41, 21 August 2022
3PCLR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (307 words) - 20:35, 11 August 2022
Graphaligner
[[Category:Software]][[Category:Genomics]]

2 KB (262 words) - 21:48, 12 January 2023
BFAST
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (276 words) - 18:16, 12 August 2022
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
IgBLAST
[[Category:Software]][[Category:Biology]]

3 KB (338 words) - 19:06, 12 August 2022
DeepLabCut
[[Category:Software]][[Category:Phylogenetics]]

3 KB (385 words) - 21:20, 6 December 2019
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
MetaCherchant
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (269 words) - 21:22, 6 December 2019
Circtools
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the circtools software

3 KB (433 words) - 19:03, 27 January 2023
CisGenome
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (249 words) - 18:30, 12 August 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
Nemo
[[Category:Software]][[Category:Machine Learning]]

2 KB (290 words) - 17:58, 15 August 2022
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
Maxbin
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning proce

3 KB (364 words) - 17:56, 27 May 2022
TreeShrink
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:29, 6 December 2019
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
Category:Search
[[Category:Software]]

3 members (0 subcategories, 0 files) - 19:50, 22 August 2022
Cowast
Coupled Ocean-Atmosphere-Wave-Sediment Trnaspost (COWAST) is public domain software developed by the United States Geological Services. The COWAST modeling sys ...urning on the HDF5 support. The build_coawst.sh, configures and builds the software, and the binary coawstM is installed in the top-level directory.

3 KB (443 words) - 13:28, 27 March 2024
CMake
[[Category:Software]][[Category:Programming]] ...designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configur

3 KB (326 words) - 13:49, 15 August 2022
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
RoseTTAFold
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 21:29, 20 July 2021
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
RAxML-NG
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 21:34, 21 August 2022
Hacdivsel
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (280 words) - 22:20, 10 October 2022
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
TrackVis/DTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]] TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imag

3 KB (418 words) - 14:56, 18 October 2022
WebLogo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Graphics]]

3 KB (417 words) - 17:40, 22 August 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
BIDSCOIN
[[Category:Software]][[Category:Neuroscience]]

2 KB (263 words) - 15:20, 14 March 2023
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
Mfannot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
Schrodinger Suite
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (257 words) - 15:30, 19 August 2022
Dapars
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (306 words) - 20:05, 23 March 2023
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Snpflip
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (247 words) - 00:05, 22 August 2022
CLIPSeqTools
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (303 words) - 20:30, 10 June 2022
MSINGS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:21, 6 December 2019
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
GraPhlAn
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and p

2 KB (284 words) - 21:21, 6 December 2019
Rainbowfish
[[Category:Software]][[Category:Phylogenetics]]

2 KB (233 words) - 19:18, 2 June 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Mashtree
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762]

2 KB (280 words) - 13:30, 15 August 2022
Trinity
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA- |{{#vardefine:exe|1}} 

4 KB (556 words) - 17:10, 22 August 2022
LocusZoom
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 21:21, 6 December 2019
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
GapCloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (264 words) - 16:52, 15 August 2022
Category:Visualization
[[Category:Software]][[Category:Data]]

19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
AWSCLI
[[Category:Software]][[Category:Utility]]

2 KB (267 words) - 15:26, 12 August 2022
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
RSEM
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data

3 KB (390 words) - 21:59, 21 August 2022
Supernova
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]] |{{#vardefine:url|https://support.10xgenomics.com/de-novo-assembly/software/}}

3 KB (306 words) - 16:55, 10 June 2022
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
Whiteboxtools
[[Category:Software]][[Category:Phylogenetics]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

3 KB (408 words) - 17:43, 22 August 2022
GlimmerHMM
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|http://ccb.jhu.edu/software/glimmerhmm/}}

3 KB (334 words) - 17:09, 15 August 2022
Plasflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (292 words) - 20:17, 31 May 2022
VEP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (270 words) - 17:28, 22 August 2022
Delly
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (291 words) - 16:46, 10 June 2022
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
R
[[Category:Software]][[Category:Statistics]][[Category:Programming]] |{{#vardefine:exe|1}} 

6 KB (981 words) - 20:45, 16 October 2023
Mercurial
[[Category:Software]][[Category:Revision Control]]

2 KB (253 words) - 19:59, 10 June 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020
ProtHint
[[Category:Software]]

3 KB (329 words) - 20:27, 12 August 2022
BayArea
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 15:02, 10 June 2022
LEMON
[[Category:Software]][[Category:Library]]

2 KB (268 words) - 15:41, 6 June 2022
PB-Assembly
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] pb-assembly is a collection of PacBio software including the following applications and their dependencies:

2 KB (269 words) - 20:11, 24 August 2022
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
Chewbbaca
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (346 words) - 15:58, 20 October 2023
Flopp
[[Category:Software]][[Category:Biology]][[Category:Population Biology]] flopp is a software package for single individual haplotype phasing of polyploid organisms from

2 KB (286 words) - 18:35, 1 December 2023
MUSCLE
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|}} 

2 KB (313 words) - 19:55, 12 August 2022
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
FDSTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:34, 27 August 2020
Catch
[[Category:Software]]

3 KB (422 words) - 18:23, 12 August 2022
StringMLST
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (292 words) - 20:45, 12 August 2022
Newick utils
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 14:10, 1 September 2021
Msfinder
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] ...omputational MS/MS fragmentation and structure elucidation using MS-FINDER software. Analytical Chemistry 88, 7946-7958, 2016.]

3 KB (290 words) - 13:32, 19 August 2022
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
Category:De Novo
[[Category:Software]]

3 members (0 subcategories, 0 files) - 19:55, 22 August 2022
Fastv
[[Category:Software]][[Category:Bioinformatics]][[Category:Sequencing]]

3 KB (327 words) - 20:08, 19 April 2024
QIIME
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

4 KB (555 words) - 15:15, 19 August 2022
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
IsoSeq3
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (295 words) - 20:10, 24 August 2022
MONAI label
[[Category:Software]][[Category:Healthcare]]

3 KB (377 words) - 11:56, 19 August 2022
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
Methylpy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 21:21, 6 December 2019
Ont fast5 api
[[Category:Software]][[Category:Phylogenetics]] Oxford Nanopore Technologies fast5 API software

2 KB (238 words) - 17:49, 19 August 2022
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
Resistome
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 21:46, 21 August 2022
QOS Limits
CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s

4 KB (598 words) - 03:35, 26 February 2023
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
Nuke
[[Category:Software]]

2 KB (277 words) - 13:47, 19 July 2023
CCMetagen
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 22:45, 3 January 2022
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
Galaxy Data Import
...he 755 mode for the directory and 644 for the files either from within the software you used for transferring the files or by logging into HPC and running the

4 KB (644 words) - 17:24, 15 December 2022
Cammiq
[[Category:Software]][[Category:Biology]][[Category:Genomics]] CAMMiQ is a software tool for microbial identification and quantification.

2 KB (281 words) - 21:39, 14 June 2023
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
Repeatscout
[[Category:Software]][[Category:biology]]

2 KB (288 words) - 21:24, 6 December 2019
PhyML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (465 words) - 20:22, 12 August 2022
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
Badread
[[Category:Software]][[Category:Phylogenetics]] ...RR. Badread: simulation of error-prone long reads. Journal of Open Source Software. 2019;4(36):1316. doi:10.21105/joss.01316.]

3 KB (363 words) - 20:47, 24 September 2020
Minia
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] It is multi-k, to aim for high contiguity. Similar software: MEGAHIT, metaSPAdes.

2 KB (285 words) - 13:31, 15 August 2022
Bsoft
[[Category:Software]][[Category:Biology]][[Category:Image Processing]] Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in struc

2 KB (297 words) - 13:14, 15 August 2022
Nanolyse
[[Category:Software]]

2 KB (260 words) - 19:24, 7 September 2022
EggNOG-mapper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 19:29, 6 December 2021
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
Capnp
[[Category:Software]][[Category:Compiler]]

2 KB (288 words) - 13:20, 15 August 2022
MetaCluster
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (321 words) - 19:26, 18 August 2022
MMSEQ
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (387 words) - 20:50, 18 August 2022
Nonpareil
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 15:48, 17 November 2020
Magus
[[Category:Software]][[Category:Sequencing]][[Category:Alignment]]

3 KB (327 words) - 17:51, 16 March 2022
Category:Compression
[[Category:Software]]

5 members (0 subcategories, 0 files) - 17:21, 3 June 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Wgd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 19:52, 27 May 2022
REPdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (327 words) - 21:43, 21 August 2022
PhyloSift
[[Category:Software]][[Category:biology]][[Category:genomics]][[Category:phylogenetics]] hyloSift is a suite of software tools to conduct phylogenetic

2 KB (255 words) - 15:45, 19 August 2022
Grf
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (278 words) - 17:21, 15 August 2022
Ampligraph
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 14:44, 10 July 2023
Assembly-stats
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (293 words) - 14:56, 12 August 2022
Octave
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/octave/}}

2 KB (333 words) - 15:22, 19 August 2022
Nt
[[Category:Software]]

2 KB (262 words) - 14:38, 15 July 2022
IRFinder
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

2 KB (244 words) - 14:59, 10 June 2022
Stumpy
[[Category:Software]][[Category:Workflow Automation]] ...calable Python Library for Time Series Data Mining. Journal of Open Source Software, 4(39), 1504.

3 KB (430 words) - 15:16, 13 April 2023
ABruijn
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (354 words) - 20:09, 24 August 2022
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
AGAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (346 words) - 22:01, 15 July 2020
Arriba
[[Category:Software]][[Category:Phylogenetics]]

3 KB (363 words) - 14:07, 1 April 2021
ToFU2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] software. The isoform sequencing (Iso-Seq) application generates full-length

3 KB (398 words) - 16:38, 22 August 2022
TNTBLAST
[[Category:Software]][[Category:Biology]] TNTBLAST (ThermonucleotideBLAST) is a software program for searching a target database of nucleic acid sequences using an

3 KB (385 words) - 20:08, 2 June 2022
TRANSIT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:29, 6 December 2019
Omniverse
[[Category:Software]][[Category:Library]][[Category:Math]]

7 KB (983 words) - 14:48, 25 July 2023
RAVE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (281 words) - 21:30, 21 August 2022
FSA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 20:38, 23 May 2022
OMindel
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:51, 31 May 2022
IOAPI
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (341 words) - 19:35, 24 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
Clover
[[Category:Software]]

2 KB (296 words) - 13:47, 15 August 2022
Tcllib
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.tcl.tk/software/tcllib/}}

2 KB (273 words) - 16:12, 10 June 2022
MC
[[Category:Software]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/mc/}}

2 KB (269 words) - 21:22, 6 December 2019
MetaCompare
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 21:21, 6 December 2019
RepeatExplorer
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (278 words) - 21:44, 21 August 2022
Visit
[[Category:Software]][[Category:Visualization]][[Category:Animation]]

3 KB (403 words) - 14:47, 15 March 2024
Relernn
[[Category:Software]]

2 KB (261 words) - 21:20, 6 February 2024
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
Detectron2
[[Category:Software]][[Category:Library]]

3 KB (295 words) - 19:33, 15 July 2021
SeSiMCMC
[[Category:Software]][[Category:Sequencing]]

3 KB (299 words) - 22:41, 21 August 2022
ProtExcluder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (329 words) - 21:22, 6 December 2019
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
Julia
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Statistics]]

3 KB (412 words) - 20:49, 21 October 2022
CAFE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software for Computational Analysis of gene Family Evolution

3 KB (318 words) - 21:06, 6 December 2019
Gemma LLMs
[[Category:Software]]

2 KB (281 words) - 20:22, 13 May 2024
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
Shustring
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (237 words) - 14:55, 10 June 2022
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
GenomeThreader
[[Category:Software]][[Category:phylogenetics]] GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions

3 KB (315 words) - 16:35, 29 November 2021
GenomeTools
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 18:58, 12 August 2022
SeqKit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 21:24, 6 December 2019
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
Package-GFE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This software package is for estimating allele and genotype frequencies from nucleotide r

2 KB (280 words) - 16:45, 10 June 2022
Smalt
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] The software employs a hash index of short words of up to 20 nucleotides

3 KB (342 words) - 17:24, 3 June 2022
Gaussian License
[[Category:Software]] * I am not a member of a research group developing software competitive to Gaussian.

1 KB (185 words) - 14:26, 30 June 2017
MKL
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Programming]][[Category:Co |{{#vardefine:url|https://software.intel.com/en-us/mkl}}

3 KB (378 words) - 19:14, 24 August 2022
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
Faqcs
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (268 words) - 17:48, 18 May 2023
Subread
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Variant Calling]]

3 KB (315 words) - 12:57, 15 August 2022
Annocript
[[Category:Software]][[Category:Phylogenetics]] ...ormation about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by usi

3 KB (387 words) - 21:18, 6 December 2019
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
Platypus
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (435 words) - 19:21, 10 June 2022
Pyani
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 19:44, 21 August 2022
PRINSEQ
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (271 words) - 15:52, 10 June 2022
Nanodisco
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:37, 27 August 2021
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
BinPacker
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...ur data and could explain all observed splicing events of each locus. This software is free to use, modify, redistribute without any restrictions, except inclu

3 KB (365 words) - 12:53, 15 August 2022
BALi-Phy
[[Category:Software]][[Category:Phylogenetics]] '''BAli-phy''' is MCMC software developed by Ben Redelings with Marc Suchard for simultaneous Bayesian esti

3 KB (402 words) - 17:19, 14 December 2022
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
BayeScan
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |{{#vardefine:url|http://cmpg.unibe.ch/software/BayeScan/index.html}}

3 KB (402 words) - 18:10, 12 August 2022
PolyPHen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PolyPhen-2 (Polymorphism Phenotyping v2) is a software tool which predicts possible impact of amino acid substitutions on the stru

3 KB (295 words) - 18:45, 27 May 2022
Appreci8
[[Category:Software]]

4 KB (561 words) - 14:25, 12 August 2022
Applications
[[Category:Software]]

1 KB (138 words) - 13:26, 27 September 2022
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
SALSA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (269 words) - 20:11, 24 August 2022
MITObim
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 15:20, 22 April 2020
PRSice
[[Category:Software]][[Category:Phylogenetics]] PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic

2 KB (287 words) - 14:26, 1 February 2021
WU BLAST
[[Category:Software]][[Category:Biology]]

3 KB (356 words) - 17:44, 22 August 2022
Knime
[[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an

3 KB (318 words) - 14:46, 9 June 2023
DSRC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 14:27, 17 February 2021
GEOS
[[Category:Software]][[Category:Library]][[Category:Data Science]]

3 KB (307 words) - 17:05, 15 August 2022
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
Rosetta
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]] Rosetta is the premier software suite for modeling macromolecular

3 KB (302 words) - 20:37, 10 June 2022
CIRCexplorer
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (308 words) - 18:29, 12 August 2022
Zstd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 17:55, 22 August 2022
Category:Phylogenetics
[[Category:Biology]][[Category:Software]][[Category:Research]] Phylogenetics software and documentation

766 members (0 subcategories, 0 files) - 21:43, 24 October 2022
C-wap
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

2 KB (281 words) - 13:16, 15 August 2022
Merqury
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 13:54, 12 August 2020
TGSGapCloser
[[Category:Software]][[Category:Phylogenetics]] A gap-closing software tool that uses error-prone long reads generated by third-generation-sequenc

3 KB (321 words) - 15:35, 20 April 2021
Desmond
[[Category:Software]][[Category:Biology]]

2 KB (256 words) - 20:07, 6 April 2023
Talon
[[Category:Software]]

3 KB (321 words) - 15:13, 23 September 2022
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
Hylite
[[Category:Software]]

3 KB (325 words) - 21:51, 24 February 2023
Intervene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (295 words) - 21:21, 6 December 2019
Pathoscope
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

3 KB (323 words) - 17:02, 21 August 2022
LongQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 14:52, 12 October 2021
Spacemake
[[Category:Software]][[Category:Sequencing]]

2 KB (249 words) - 22:12, 22 September 2022
CutRunTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 22:20, 26 August 2020
Lazypipe
[[Category:Software]]

4 KB (507 words) - 16:54, 14 December 2022
MixMHCpred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:34, 31 May 2022
MIRA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (313 words) - 20:42, 18 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
AdmixTools
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes

3 KB (400 words) - 20:50, 11 August 2022
Category:Variant Calling
[[Category:Software]][[Category:Biology]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
RFAA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...abases and structure templates as well as required dependencies to run the software. However, users should download the contents of the repo locally to run the

3 KB (323 words) - 16:56, 27 March 2024
FastQC
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (382 words) - 15:25, 15 August 2022
ROOT
[[Category:Software]][[Category:Data Science]]

3 KB (358 words) - 16:48, 21 August 2022
GRACKLE
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Astronomy]]

2 KB (294 words) - 17:18, 15 August 2022
ParlAI
[[Category:Software]][[Category:Phylogenetics]] title={ParlAI: A Dialog Research Software Platform},

3 KB (301 words) - 15:55, 21 July 2021
4p
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] 4P (Parallel Processing of Polymorphism Panels) is a software for computing

2 KB (285 words) - 20:36, 11 August 2022
LMAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (330 words) - 20:03, 15 August 2022
Category:Assembly
[[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.

20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
ReFrame
[[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]

2 KB (240 words) - 21:40, 21 August 2022
Toil
[[Category:Software]][[Category:biology]]

2 KB (258 words) - 20:47, 12 August 2022
Stacks
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. St

4 KB (658 words) - 21:20, 2 January 2023
PEAR
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.exelixis-lab.org/web/software/pear}}

3 KB (312 words) - 17:25, 21 August 2022
Macaulay2
[[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry

2 KB (246 words) - 20:23, 15 August 2022
Nextclade
[[Category:Software]]

2 KB (260 words) - 19:03, 12 January 2023
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
Dcmstack
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (272 words) - 14:29, 15 August 2022
Mxnet
[[Category:Software]][[Category:healthcare]]

2 KB (265 words) - 22:02, 10 October 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
Uropa
[[Category:Software]]

3 KB (337 words) - 15:42, 6 September 2022
MSMBuilder
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

2 KB (288 words) - 16:38, 10 June 2022
Camino
[[Category:Software]][[Category:Imaging]][[Category:Biology]][[Category:Neuroscience]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn

3 KB (291 words) - 18:22, 12 August 2022
SourceTracker2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 14:19, 14 September 2020
Comp-D MPI
[[Category:Software]][[Category:Statistics]]

2 KB (264 words) - 16:54, 9 June 2022
PyCharm
[[Category:Software]][[Category:Programming]]

2 KB (229 words) - 12:24, 26 August 2022
BayesAss
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 21:13, 6 December 2019
BOLT-LMM
[[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f

2 KB (289 words) - 16:24, 2 January 2020
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
Blitz
[[Category:Software]][[Category:Library]]

3 KB (303 words) - 21:19, 6 December 2019
RMATS turbo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (289 words) - 19:26, 2 June 2022
Category:Physics
[[Category:Software]]

21 members (0 subcategories, 0 files) - 15:38, 19 September 2014
PBCCS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:07, 21 August 2022
Skmer
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
GDC-Client
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (311 words) - 18:57, 12 August 2022
FastANI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (380 words) - 21:21, 6 December 2019
MongoDB
[[Category:Software]][[Category:Database]]

3 KB (340 words) - 19:22, 11 February 2021
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
Flex
[[Category:Software]][[Category:Programming]]

2 KB (266 words) - 19:54, 3 June 2022
QIIME2
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

3 KB (435 words) - 15:15, 19 August 2022
PROVEAN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa

3 KB (350 words) - 20:27, 12 August 2022
AutoDock-GPU
[[Category:Software]][[Category:Chemistry]]

3 KB (332 words) - 15:25, 12 August 2022
Bgenix
...ten in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the

2 KB (291 words) - 12:52, 15 August 2022
QUAST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (361 words) - 21:01, 21 August 2022
Hardware Accelerated GUI Sessions
[[Category:Software]] ==Launching Hardware (HW) Accelerated GUI software==

342 bytes (45 words) - 13:18, 12 April 2023
Lrgapcloser
[[Category:Software]][[Category:Biology]]

3 KB (326 words) - 19:30, 12 August 2022
Wgs
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:55, 12 August 2022
Conda
[[Category:Software]][[Category:Programming]]

16 KB (2,392 words) - 20:14, 16 April 2024
AI Reference Datasets
You may need to use the full path /blue/data/ai for software applications to find the file.

2 KB (256 words) - 15:03, 28 September 2021
NetCDF-C
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (278 words) - 14:47, 19 August 2022
MTG2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
Vim
[[Category:Software]][[Category:Programming]][[Category:Language]]

3 KB (320 words) - 18:56, 21 August 2022
MPACK
[[Category:Software]][[Category:Library]]

3 KB (307 words) - 17:03, 10 June 2022
CGView
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 19:39, 23 May 2022
Espresso SLURM
[[Category:Software]]

1 KB (144 words) - 21:20, 8 November 2022
BEAGLE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou

5 KB (615 words) - 15:36, 14 December 2022
Bertini
[[Category:Software]][[Category:Math]] Software for solving polynomial systems

2 KB (248 words) - 12:48, 15 August 2022
SCIrun
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.sci.utah.edu/cibc-software/scirun.html}}

3 KB (344 words) - 22:09, 21 August 2022
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
MORPHEUS
[[Category:Software]][[Category:Machine Learning]]

3 KB (337 words) - 19:01, 14 March 2023
Unicycler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:29, 6 December 2019
LAMP
[[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po

2 KB (245 words) - 19:29, 12 August 2022
Vt
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (273 words) - 16:13, 10 June 2022
Miniwdl
[[Category:Software]][[Category:Bioinformatics]]

2 KB (283 words) - 18:55, 1 December 2023
Reptile
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Math]] |{{#vardefine:exe|1}} 

3 KB (458 words) - 21:46, 21 August 2022
AtomEye
[[Category:Software]][[Category:Material Science]] AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics cor

3 KB (351 words) - 15:21, 12 August 2022
Dtiprep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 21:50, 27 August 2020
MTR
[[Category:Software]]

2 KB (245 words) - 14:03, 23 June 2021
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
MstatX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (288 words) - 21:22, 6 December 2019
Falco
[[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.

2 KB (283 words) - 14:11, 21 October 2022
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
HUMAnN
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (327 words) - 14:26, 11 October 2022
Kmcos
[[Category:Software]][[Category:Chemistry]]

2 KB (255 words) - 13:54, 30 April 2024
Java
[[Category:Software]][[Category:Programming]]

3 KB (448 words) - 19:10, 15 August 2022
FFmpeg
[[Category:Software]][[Category:Audio]][[Category:Visualization]]

2 KB (252 words) - 16:41, 15 August 2022
MEGASAT
[[Category:Software]][[Category:Phylogenetics]] MEGASAT is a software tool that can automatically infer genotypes from high-throughput microsatel

2 KB (278 words) - 13:22, 28 August 2020
Hal
[[Category:Software]][[Category:Phylogenetics]]

3 KB (366 words) - 18:11, 15 August 2022
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
HAPLOSWEEP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 21:20, 6 December 2019
TURBOMOLE
[[Category:Software]][[Category:Chemistry]] TURBOMOLE is a licensed software. To use it, please provide your license. We will set the file permissions a

3 KB (369 words) - 17:42, 15 August 2022
Spidey
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (295 words) - 20:44, 12 August 2022
SWIG
[[Category:Software]][[Category:library]][[Category:Programming]][[Category:Compiler]] ...ort its parse tree in the form of XML and Lisp s-expressions. SWIG is free software and the code that SWIG generates is compatible with both commercial and non

3 KB (414 words) - 20:04, 21 August 2022
Grace
[[Category:Software]][[Category:Statistics]][[Category:Graphics]] |{{#vardefine:exe|1}} 

2 KB (256 words) - 17:17, 15 August 2022
Create SSH Keys Using Putty
==Prerequisite software== Here is a list of the software you will need to be installed on your local machine to start using key-base

7 KB (1,195 words) - 13:39, 26 June 2023
MetaPhysicl
[[Category:Software]][[Category:Math]][[Category:Astronomy]][[Category:Simulation]]

2 KB (247 words) - 19:28, 18 August 2022
SLAW
[[Category:Software]][[Category:Chemistry]][[Category:Spectroscopy]]

3 KB (389 words) - 23:49, 21 August 2022
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
Paralyzer
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/PARalyzer_85/}}

3 KB (352 words) - 18:19, 27 May 2022
Slurm
[[Category:Software]][[Category:Scheduler]] ...a fair chance of using the resources without interfering with each other. Software called a resource manager and a scheduler are required to fulfill the above

5 KB (763 words) - 17:37, 5 March 2024
Micop
[[Category:Software]][[Category:Genomics]]

2 KB (269 words) - 16:40, 27 September 2022
Redis
[[Category:Software]][[Category:Data Science]][[Category:Database]]

2 KB (267 words) - 21:39, 21 August 2022
DOT
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] DOT is a software package for docking macromolecules, including proteins, DNA, and RNA. DOT p

3 KB (340 words) - 14:46, 15 August 2022
CIMS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (315 words) - 17:21, 10 June 2022
PyVista
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:56, 25 September 2020
Plotsr
[[Category:Software]]

2 KB (271 words) - 20:00, 5 August 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
Ubuntu
[[Category:Software]][[Category:Linux]] Ubuntu is an open source software operating system that runs from the desktop, to the cloud, to all your inte

3 KB (321 words) - 19:57, 14 February 2024
Qcat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 16:17, 23 January 2020
TensorFlow
[[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a

6 KB (790 words) - 15:25, 14 December 2022
CGAL
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (293 words) - 15:32, 6 June 2022
Minipolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (338 words) - 14:53, 9 December 2019
Installing Personal Python Modules
[[Category:Python]][[Category:Software]] ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt

2 KB (243 words) - 14:51, 10 February 2023
Fslmrs
[[Category:Software]][[Category:Spectroscopy]][[Category:Chemistry]] ...ingle voxel and multi-voxel (MRSI) datasets. FSL-MRS is part of FSL (FMRIB Software Library).

3 KB (293 words) - 16:50, 15 August 2022
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
SURVIVOR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 21:24, 6 December 2019
Slamdunk
[[Category:Software]][[Category:Phylogenetics]] SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis

3 KB (294 words) - 20:55, 27 May 2022
QAPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 16:54, 15 January 2021
Stampy
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (327 words) - 20:45, 12 August 2022
Phylonet
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzing and reconstructing reticulate evolutionary histories,

2 KB (263 words) - 21:23, 6 December 2019
PennCNV
[[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.

4 KB (474 words) - 21:23, 6 December 2019
PacBio
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:Workflow Automation]] |{{#vardefine:url|https://www.pacb.com/products-and-services/analytical-software/devnet/}}

2 KB (250 words) - 20:10, 24 August 2022
CellRanger-DNA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}

2 KB (263 words) - 13:25, 15 August 2022
SSPACE
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 20:44, 12 August 2022
Guideseq
[[Category:Software]]

2 KB (259 words) - 18:08, 15 August 2022
VTC
[[Category:Software]][[Category:Biology]]

3 KB (364 words) - 20:55, 12 August 2022
Squigglenet
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (262 words) - 20:12, 9 May 2022
BEAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|1}} 

4 KB (553 words) - 14:27, 27 June 2023
PETSc
[[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.

3 KB (337 words) - 15:25, 19 August 2022
OpenNeuro
[[Category:Software]][[Category:Data Science]][[Category:Biology]]

2 KB (248 words) - 17:56, 19 August 2022
SibeliaZ
[[Category:Software]]

2 KB (284 words) - 20:40, 12 August 2022
Singularity
[[Category:Software]][[Category:Workflow Automation]]

3 KB (410 words) - 21:30, 6 February 2023
UCX
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]]

2 KB (244 words) - 12:02, 26 August 2022
R-index
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:24, 6 December 2019
GFOLD
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (388 words) - 18:54, 10 June 2022
ZEO++
[[Category:Software]][[Category:Chemistry]] Zeo++ is a open source software for performing high-throughput geometry-based analysis of porous materials

3 KB (424 words) - 19:47, 27 May 2022
Geopython
[[Category:Software]][[Category:Programming]][[Category:Geospatial]]

2 KB (246 words) - 12:22, 26 August 2022
RStudio Server
[[Category:Software]][[Category:Statistics]]

2 KB (282 words) - 15:56, 22 February 2023
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
COLMAP
[[Category:Software]][[Category:Modeling]] ...eatures for reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license. If you use this project for your res

2 KB (290 words) - 16:53, 6 June 2022
PATRIC
[[Category:Software]][[Category:Machine Learning]] PATRIC is an integration of different types of data and software tools that support research on bacterial pathogens. The typical biologist s

3 KB (390 words) - 16:04, 6 June 2022
Matlab
[[Category:Software]][[Category:Language]][[Category:Math]] |{{#vardefine:exe|1}} 

9 KB (1,361 words) - 16:06, 28 November 2023
MCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (372 words) - 18:28, 18 August 2022
Quickmerge
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 21:24, 6 December 2019
ClustalO
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (292 words) - 18:36, 12 August 2022
CUBE
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] |{{#vardefine:url|http://www.scalasca.org/software/cube-4.x}}

3 KB (329 words) - 14:14, 15 August 2022
Ncbi-genome-download
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (241 words) - 20:42, 7 February 2024
SPARTA+
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:url|http://spin.niddk.nih.gov/bax/software/SPARTA+/}}

2 KB (262 words) - 13:55, 6 June 2022
VS Code Remote Development
* By using the software, you agree to

7 KB (1,100 words) - 17:42, 5 March 2024
FMRIPrep
[[Category:Software]][[Category:Data Mining]]

2 KB (288 words) - 16:47, 17 October 2023
Rbp-maps
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:54, 27 May 2022
PyHIST
[[Category:Software]]

4 KB (567 words) - 16:12, 22 December 2022
Panaroo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (289 words) - 19:33, 13 June 2023
Category:Language
[[Category:Software]]

22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
Hyb
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (247 words) - 15:07, 10 June 2022
VAMPIR
[[Category:Software]][[Category:Performance Analysis]]

3 KB (321 words) - 17:22, 22 August 2022
Scoary
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 22:10, 21 August 2022
RNAhybrid
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (285 words) - 20:56, 12 August 2022
LAPACK
[[Category:Software]][[Category:Library]][[Category:Programming]][[Category:Compiler]] LAPACK is a standard software library for numerical linear algebra. It provides routines for solving syst

2 KB (286 words) - 17:43, 15 August 2022
ProDy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (294 words) - 19:38, 21 August 2022
MHAP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (270 words) - 16:15, 10 June 2022
Coot
[[Category:Software]][[Category:Modeling]]

3 KB (300 words) - 21:17, 6 December 2019
Torch-geometric
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 19:43, 1 June 2022
PICRUSt
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 18:28, 10 June 2022
Slurm-drmaa
[[Category:Software]][[Category:library]][[Category:Scheduler Apps]][[Category:Programming]] ..., portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.

3 KB (316 words) - 14:30, 11 July 2023
Siesta
[[Category:Software]][[Category:Chemistry]]

3 KB (427 words) - 13:54, 6 June 2022
MiRDP2
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (328 words) - 18:09, 31 May 2022
Mpinterfaces
[[Category:Software]][[Category:Math]]

2 KB (279 words) - 12:27, 19 August 2022
Pygenometracks
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (375 words) - 20:54, 18 May 2023
MAGeCKFlute
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 20:24, 15 August 2022
Platanus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 21:23, 6 December 2019
Openstructure
[[Category:Software]][[Category:Biology]] If you like our software and have used it in your research project, please cite the following paper

3 KB (403 words) - 23:35, 6 February 2023
RStudio
[[Category:Software]][[Category:Statistics]]

3 KB (461 words) - 19:51, 18 July 2023
Protobuf
[[Category:Software]][[Category:web]][[Category:library]]

2 KB (280 words) - 18:02, 15 August 2022
CrossMap
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (335 words) - 17:50, 10 June 2022
AMPtk
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (289 words) - 12:41, 12 August 2022
Cvbio
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 13:11, 21 October 2020
Artemis
[[Category:Software]][[Category:Biology]]

3 KB (378 words) - 14:53, 12 August 2022
SICER
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software.htm}}

2 KB (279 words) - 16:35, 10 June 2022
Saffrontree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (400 words) - 17:17, 31 May 2022
Spyder
[[Category:Software]][[Category:Programming]]

3 KB (350 words) - 18:56, 21 August 2022
SCRIPTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://software.broadinstitute.org/software/scripture/}}

3 KB (302 words) - 20:36, 12 August 2022
Epoch
[[Category:Software]][[Category:Astronomy]]

2 KB (250 words) - 13:13, 6 June 2022
GNU Compiler Collection
[[Category:Software]][[Category:Compiler]] ...for the GNU operating system. The GNU system was developed to be 100% free software, free in the sense that it respects the user's freedom.

2 KB (298 words) - 20:44, 15 August 2022
Ansible
[[Category:Software]][[Category:Workflow Automation]]

3 KB (348 words) - 14:17, 12 August 2022
Ciriquant
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 15:00, 30 March 2022
VCF-kit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 17:26, 22 August 2022
MitoPhAST
[[Category:Software]][[Category:Phylogenetics]]

3 KB (382 words) - 14:27, 23 April 2020
Vamb
[[Category:Software]]

3 KB (302 words) - 18:59, 1 February 2021
HDF5
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:exe|}} 

2 KB (326 words) - 18:16, 15 August 2022
Rapidtide
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 13:58, 7 May 2020
Simka
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 19:25, 18 February 2021
Get homologues
[[Category:Software]][[Category:Biology]][[Category:Genomics]] An open-source software package that builds on popular orthology-calling approaches making highly c

3 KB (306 words) - 21:20, 6 December 2019
Disbatch
[[Category:Software]]

2 KB (246 words) - 15:19, 18 July 2023
PAPI
[[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} 

3 KB (360 words) - 16:36, 21 August 2022
CMS
[[Category:Software]][[Category:Biology]]

3 KB (317 words) - 21:02, 6 December 2019
Bamm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 18:00, 12 August 2022
Category:NGS
[[Category:Biology]][[Category:Software]][[Category:Research]] Next Generation Sequencing Software and Documentation

209 members (2 subcategories, 0 files) - 21:43, 24 October 2022
Category:RNA-Seq
[[Category:NGS]][[Category:Software]]

28 members (0 subcategories, 0 files) - 15:28, 23 August 2022
Compacta
[[Category:Software]] Compacta is a software designed to reduce the number of contigs given by

3 KB (294 words) - 13:52, 15 August 2022
AmPEPpy
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 14:13, 22 April 2021
Opennmt-py
[[Category:Software]][[Category:Language]][[Category:Machine_Learning]]

2 KB (272 words) - 20:14, 6 April 2023
Infernal
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (305 words) - 19:31, 24 August 2022
Lucene
[[Category:Software]][[Category:Programming]][[Category:Search]]

2 KB (262 words) - 12:11, 26 August 2022
DeepPicker
[[Category:Software]][[Category:Imaging]] This software is installed in a container.

2 KB (281 words) - 14:34, 15 August 2022
Wise
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (321 words) - 21:29, 6 December 2019
File:Software.png
software icon for main menu...possibly

(500 × 500 (15 KB)) - 13:53, 24 June 2022
Git-filter-repo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 18:47, 3 June 2022
Olego
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (309 words) - 17:44, 19 August 2022
DeepGS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:21, 26 August 2020
Prottest3
[[Category:Software]] This software requires GUI. See more: [https://help.rc.ufl.edu/doc/GUI_Programs GUI Progr

3 KB (369 words) - 15:57, 13 September 2022
MMvec
[[Category:Software]][[Category:Chemistry]]

2 KB (238 words) - 20:51, 18 August 2022
MetaBAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 21:21, 6 December 2019
Sine scan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 18:28, 1 June 2022
ADMIXTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|https://www.genetics.ucla.edu/software/admixture/index.html}}

3 KB (366 words) - 20:51, 11 August 2022
Category:Web
[[Category:Software]]

11 members (1 subcategory, 0 files) - 19:51, 22 August 2022
Yagcloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]

2 KB (265 words) - 19:07, 1 April 2024
Augustus
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (417 words) - 15:23, 12 August 2022
CoMap
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (378 words) - 18:39, 12 August 2022
Graftm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 22:16, 27 August 2020
AlphaFold
[[Category:Software]][[Category:Phylogenetics]] ...GPU. An example job script for a run with the test data included with the software is shown below.

6 KB (832 words) - 15:38, 2 February 2024
SplAdder
[[Category:Software]][[Category:Phylogenetics]] ...lternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized format

3 KB (304 words) - 15:50, 22 August 2022
TEtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (257 words) - 21:29, 6 December 2019
Segment-liftover
[[Category:Software]]

2 KB (251 words) - 20:38, 12 August 2022
TrimAl
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Alignment‏]]

2 KB (264 words) - 19:32, 24 August 2022
Theano
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:GPU]] |{{#vardefine:url|http://www.deeplearning.net/software/theano/}}

3 KB (345 words) - 15:58, 6 June 2022
MELD
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

3 KB (318 words) - 18:35, 18 August 2022
DSSP
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (297 words) - 19:51, 13 June 2022
Mamba
[[Category:Software]]

3 KB (429 words) - 20:16, 3 June 2022
Biopieces
[[Category:Software]][[Category:Phylogenetics]] The software requires users to create the BP_DATA, tmp, and BP_LOG directories in your w

3 KB (410 words) - 15:40, 10 December 2021
Category:Astronomy
[[Category:Software]]

9 members (0 subcategories, 0 files) - 16:17, 3 June 2022
SMARTdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (296 words) - 21:24, 6 December 2019
Sampledock
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (253 words) - 17:59, 15 August 2022
PASTA
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (381 words) - 19:31, 24 August 2022
Sate
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://phylo.bio.ku.edu/software/sate/sate.html}}

7 KB (910 words) - 20:43, 21 December 2022
Gaussian
[[Category:Software]][[Category:Chemistry]] Please note that Gaussian is restricted software. Users who intend to use it must sign the '''Gaussian Confidentiality Agree

6 KB (918 words) - 14:39, 8 March 2023
ImageJ
[[Category:Software]][[Category:Imaging]]

2 KB (268 words) - 20:03, 10 June 2022
Aria2
[[Category:Software]][[Category:Utility]]

3 KB (326 words) - 14:05, 17 September 2020
Cpc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 17:22, 9 June 2022
PyCogent
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (275 words) - 17:20, 1 June 2022
Pbrt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 18:20, 27 May 2022
Gerbil
[[Category:Software]][[Category:Phylogenetics]] ...hat is specialized for high effiency when counting k-mers for large k. The software is decribed here.

3 KB (320 words) - 14:34, 3 January 2020
BESST
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 12:51, 15 August 2022
BIOM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (272 words) - 21:02, 6 December 2019
LIBXC
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (240 words) - 19:54, 15 August 2022
Category:Molecular Dynamics
[[Category:Software]]

16 members (0 subcategories, 0 files) - 15:38, 19 August 2022
Pggb
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 19:56, 6 November 2020
Fast5tools
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (251 words) - 18:31, 28 April 2022
Category:Image Processing
[[Category:Software]]

14 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Fgbio
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:20, 6 December 2019
PSMC
[[Category:Software]][[Category:Phylogenetics]] This software package infers population size history from a diploid sequence

2 KB (263 words) - 14:01, 28 February 2020
VARI
[[Category:Software]][[Category:math]][[Category:visualization]]

2 KB (248 words) - 14:10, 11 October 2022
Corset
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...gram to go from a de novo transcriptome assembly to gene-level counts. Our software takes a set of reads that have been multi-mapped to the transcriptome (wher

3 KB (309 words) - 17:09, 10 June 2022
FRAMA
[[Category:Software]][[Category:biology]]

2 KB (236 words) - 21:21, 6 December 2019
OrthoMCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

5 KB (748 words) - 22:40, 28 January 2024
KaKs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

2 KB (281 words) - 19:18, 15 August 2022
Hapdup
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (324 words) - 21:07, 7 April 2022
LongStitch
[[Category:Software]] [[Category:Genomics]] [[Category:Biology]]

3 KB (314 words) - 19:00, 10 October 2022
Phyluce
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultr

4 KB (517 words) - 18:23, 21 August 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
Goatools
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 03:26, 2 January 2023
Tiff
[[Category:Software]][[Category:Imaging]] This software provides support for the Tag Image File Format (TIFF), a widely used format

2 KB (246 words) - 19:19, 1 June 2022
Graph-tool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 17:20, 15 August 2022
NewTargets
[[Category:Software]]

3 KB (379 words) - 20:06, 12 August 2022
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
SQANTI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 21:24, 6 December 2019
Z1Plus
[[Category:Software]]

2 KB (293 words) - 19:36, 6 September 2023
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
Chromeister
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 19:42, 23 May 2022
Category:Statistics
[[Category:Math]][[Category:Software]] Statistical software

16 members (0 subcategories, 0 files) - 15:29, 23 August 2022
SnpEff
[[Category:Software]][[Category:Biology]][[Category:Annotation]]

4 KB (562 words) - 15:19, 5 January 2023
Blackfynn
[[Category:Software]][[Category:Data Mining]]

2 KB (280 words) - 19:12, 27 May 2022
Smudgeplot
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 15:19, 4 May 2021

Search results

Navigation menu

Search