REPdenovo is designed for constructing repeats directly from sequence reads. It based on the idea of frequent k-mer assembly. REPdenovo provides many functionalities, and can generate much longer repeats than existing tools. The overall pipeline is shown in the mannual file. REPdenovo supports the following main functionalities.
- HPC_REPDENOVO_DIR - installation directory
- HPC_REPDENOVO_BIN - executable directory
- HPC_REPDENOVO_DOC - documentation directory
- HPC_REPDENOVO_EXE - sample directory
If you publish research that uses repdenovo you have to cite it as follows: