TraCeR

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Description

tracer website  

This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell.

Required Modules

Serial

  • tracer

System Variables

  • HPC_TRACER_DIR - installation directory

Additional Information

To copy and use your own tracer config file use $ cp $HPC_TRACER_DIR/tracer.conf .