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- Or you can browse through the sub-categories or software package names in the table below. To add a documentation page for a new piece of software installed into /apps please go to [[Add New App Page]].2,123 members (62 subcategories, 0 files) - 19:53, 20 February 2024
- #REDIRECT [[Software Development Policies]]43 bytes (4 words) - 20:46, 6 June 2022
- 26 bytes (2 words) - 17:41, 28 September 2017
- ==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r533 bytes (84 words) - 15:43, 19 August 2022
- ==Availabile Linux Software installed in ResVault==2 KB (262 words) - 18:47, 20 February 2023
Page text matches
- | style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]] ...padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>5 KB (654 words) - 20:23, 11 August 2023
- [[Category:Software]][[Category:Biology]][[Category:NGS]]2 KB (297 words) - 13:34, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Sequencing]]3 KB (316 words) - 12:30, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (244 words) - 21:21, 6 December 2019
- [[Category:Software]]2 KB (271 words) - 15:06, 18 January 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (287 words) - 16:12, 24 November 2020
- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (263 words) - 18:44, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://software.broadinstitute.org/software/igv/}}2 KB (276 words) - 18:42, 15 August 2022
- [[Category:Software]][[Category:Compiler]][[Category:Programming]]3 KB (303 words) - 20:44, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl3 KB (372 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]3 KB (365 words) - 16:47, 17 January 2023
- [[Category:Software]][[Category:Phylogenetics]]3 KB (303 words) - 19:31, 26 May 2022
- [[Category:Software]][[Category:Math]]3 KB (315 words) - 14:52, 12 August 2022
- For questions about specific software such as Python, OpenOnDemand, or Custom Installations, visit [[Application ...GPU partitions, but HWGUI is more dedicated to interface visualization for software whos GUI requires hardware acceleration, but it's not directed to high perf7 KB (1,083 words) - 13:32, 5 February 2024
- [[Category:Software]][[Category:Phylogenetics]]2 KB (235 words) - 17:14, 1 June 2022
- [[Category:Software]]2 KB (275 words) - 20:42, 28 April 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (284 words) - 17:17, 19 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->3 KB (349 words) - 20:53, 12 August 2022
- [[Category:Software]][[Category:Documentation]]2 KB (254 words) - 17:08, 15 August 2022
- [[Category:Software]][[Category:Healthcare]] The Survival Kit is primarily intended to fill a gap in the software available to animal breeders who generally tend to use extremely large data2 KB (263 words) - 16:11, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (375 words) - 18:43, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (315 words) - 00:06, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]][[Category:Genomics]]2 KB (254 words) - 21:41, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]][[Category:Genomics]][[Categ ...CAPE (Biosynthetic Gene Similarity Clustering and Prospecting Engine) is a software package, written in Python, that constructs sequence similarity networks of3 KB (377 words) - 12:53, 15 August 2022
- [[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (294 words) - 15:23, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (315 words) - 19:53, 17 August 2020
- [[Category:Software]]3 KB (303 words) - 15:23, 28 October 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}2 KB (302 words) - 20:27, 12 August 2022
- [[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.2 KB (263 words) - 17:46, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (320 words) - 21:22, 6 December 2019
- [[Category:Software]]2 KB (266 words) - 20:30, 2 August 2021
- [[Category:Software]] Software tools for clustering, reconstruction and typing of plasmids from draft asse3 KB (340 words) - 20:03, 10 October 2022
- [[Category:Software]]2 KB (273 words) - 14:45, 28 July 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (348 words) - 22:07, 20 October 2023
- [[Category:software]][[Category:biology]][[Category:sequencing]]2 KB (275 words) - 00:33, 25 May 2023
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]2 KB (302 words) - 17:55, 22 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (305 words) - 18:13, 22 July 2021
- [[Category:Software]][[Category:Phylogenetics]] is a free software package containing programs for use in the genetic analysis of family, pedi2 KB (277 words) - 15:17, 10 September 2021
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (298 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]] MSTmap is a software tool that is capable of constructing genetic linkage maps efficiently and a3 KB (354 words) - 13:45, 25 March 2020
- [[Category:Software]][[Category:Library]]2 KB (250 words) - 19:56, 13 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Biology]]3 KB (333 words) - 18:52, 12 August 2022
- [[Category:Software]]5 members (0 subcategories, 0 files) - 19:53, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (317 words) - 21:02, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (247 words) - 22:22, 27 August 2020
- [[Category:Software]][[Category:Phylogenetics]]3 KB (305 words) - 18:57, 20 October 2021
- [[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}2 KB (253 words) - 16:28, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (271 words) - 21:29, 6 December 2019
- [[Category:Software]]3 KB (361 words) - 14:11, 21 October 2022
- * Load the software you need3 KB (502 words) - 14:13, 27 October 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (296 words) - 17:09, 10 June 2022
- [[Category:Software]][[Category:shell]]2 KB (229 words) - 21:29, 6 December 2019
- [[Category:Software]]2 KB (246 words) - 20:40, 21 June 2017
- [[Category:Software]][[Category:Math]]3 KB (315 words) - 22:21, 8 September 2020
- [[Category:Software]][[Category:Phylogenetics]]3 KB (322 words) - 19:25, 14 December 2021
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}2 KB (295 words) - 21:28, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (245 words) - 18:17, 21 August 2022
- [[Category:Software]]3 KB (411 words) - 14:01, 27 May 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]]2 KB (236 words) - 18:36, 24 March 2023
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (277 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (308 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}3 KB (317 words) - 15:19, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (308 words) - 14:16, 22 September 2020
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (268 words) - 19:23, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (365 words) - 17:52, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (288 words) - 21:11, 6 December 2019
- [[Category:Software]][[Category:Genomics]][[Category:Biology]]2 KB (291 words) - 21:25, 9 May 2023
- [[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}4 KB (601 words) - 19:10, 27 November 2023
- [[Category:Software]][[Category:Biology]][[Category:Neuroscience]]2 KB (249 words) - 14:58, 10 June 2022
- [[Category:Software]][[Category:Utility]][[Category:Library]]2 KB (289 words) - 13:16, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (314 words) - 00:05, 22 August 2022
- [[Category:Software]]3 KB (359 words) - 21:58, 21 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}3 KB (326 words) - 14:41, 15 August 2022
- [[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.caam.rice.edu/software/ARPACK/}}2 KB (255 words) - 14:42, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]3 KB (305 words) - 19:28, 12 August 2022
- [[Category:Software]][[Category:genomics]][[Category:Biology]]2 KB (277 words) - 13:30, 15 August 2022
- [[Category:Software]][[Category:GUI]]7 KB (1,059 words) - 16:46, 5 May 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (289 words) - 14:44, 26 January 2021
- [[Category:Biology]][[Category:Software]] Genomics Software342 members (0 subcategories, 0 files) - 15:26, 23 August 2022
- [[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.3 KB (307 words) - 12:10, 26 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (285 words) - 18:48, 21 August 2022
- [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.barrnap.shtml}}3 KB (328 words) - 17:55, 10 June 2022
- [[Category:Software]] is a software application program that comprises crop simulation3 KB (371 words) - 14:52, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (236 words) - 20:08, 21 August 2022
- [[Category:Software]][[Category:Web]]2 KB (246 words) - 17:50, 15 August 2022
- [[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-3 KB (364 words) - 15:25, 19 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (244 words) - 17:17, 2 June 2022
- [[Category:Software]]2 KB (282 words) - 15:45, 19 August 2022
- [[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]2 KB (278 words) - 20:39, 24 August 2022
- [[Category:Software]][[Category:biology]]3 KB (344 words) - 19:55, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode2 KB (279 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Phylogenetics]]2 KB (274 words) - 22:38, 21 August 2022
- [[Category:Software]][[Category:Genomics]]2 KB (271 words) - 17:03, 15 August 2022
- [[Category:Software]]64 members (1 subcategory, 0 files) - 21:45, 24 October 2022
- [[Category:Software]][[Category:Machine Learning]] D2Go is a production ready software system from FacebookResearch, which supports end-to-end model training and2 KB (251 words) - 14:23, 15 August 2022
- [[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli2 KB (256 words) - 20:59, 22 September 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (320 words) - 21:54, 26 August 2020
- [[Category:Software]]3 KB (311 words) - 18:57, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Alignment]]2 KB (265 words) - 18:37, 12 August 2022
- [[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele3 KB (344 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.3 KB (337 words) - 17:42, 11 January 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (258 words) - 15:11, 10 June 2022
- [[Category:Software]]415 bytes (50 words) - 20:40, 5 April 2018
- [[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.3 KB (384 words) - 17:33, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]3 KB (343 words) - 18:21, 8 December 2023
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (249 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Software]][[Category:Phylogenetics]]2 KB (253 words) - 15:06, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Genomics]]3 KB (432 words) - 18:17, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (420 words) - 20:09, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge3 KB (330 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]3 KB (299 words) - 21:28, 16 September 2022
- [[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://www.cbcb.umd.edu/software/quake/}}3 KB (367 words) - 18:50, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Variant Calling]]2 KB (264 words) - 12:56, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (308 words) - 12:54, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (333 words) - 19:27, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (290 words) - 14:20, 2 September 2020
- [[Category:Software]][[Category:Phylogenetics]]3 KB (373 words) - 15:43, 17 November 2021
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->2 KB (232 words) - 16:48, 15 August 2022
- [[Category:Software]][[Category:Math]][[Category:Data_Science]]3 KB (318 words) - 19:07, 16 May 2023
- [[Category:Software]]3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
- [[Category:Software]]2 KB (241 words) - 20:08, 24 October 2022
- [[Category:Software]]13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
- [[Category:Software]][[Category:web]][[Category:programming]]3 KB (322 words) - 18:02, 15 August 2022
- [[Category:Software]][[Category:Data Science]]3 KB (416 words) - 21:28, 13 October 2023
- [[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w2 KB (259 words) - 20:26, 24 August 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Alignment]]3 KB (320 words) - 18:22, 21 August 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b2 KB (269 words) - 19:02, 10 October 2022
- [[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}2 KB (281 words) - 21:24, 6 December 2019
- [[Category:Software]]2 KB (267 words) - 17:50, 28 August 2023
- <noinclude>[[Category:Templates]]</noinclude><includeonly>[[Category:Software]]</includeonly>2 KB (229 words) - 20:58, 6 December 2019
- [[Category:Software]]8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
- [[Category:Software]][[Category:biology]][[Category:sequencing]]2 KB (254 words) - 21:24, 6 December 2019
- [[Category:Software]]2 KB (304 words) - 16:29, 6 October 2022
- [[Category:Software]][[Category:Compression]]2 KB (274 words) - 14:23, 27 May 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]]3 KB (308 words) - 15:28, 12 August 2022
- [[Category:Software]][[Category:Astronomy]]2 KB (271 words) - 13:11, 6 June 2022
- [[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo3 KB (314 words) - 18:20, 27 January 2020
- [[Category:Software]][[Category:NGS]][[Category:Genomics]]2 KB (249 words) - 14:39, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}2 KB (275 words) - 19:52, 10 February 2020
- [[Category:Software]]3 KB (353 words) - 17:42, 19 October 2021
- [[Category:Software]]3 KB (375 words) - 18:17, 3 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]2 KB (254 words) - 15:06, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Library]]2 KB (296 words) - 20:25, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (238 words) - 14:28, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.3 KB (359 words) - 20:53, 12 August 2022
- [[Category:Software]][[Category:Biology]]2 KB (248 words) - 19:54, 2 June 2022
- [[Category:Software]]3 KB (338 words) - 17:43, 29 August 2022
- == AI Software == A comprehensive software stack for AI research is available on HiPerGator for both CPU and GPU accel6 KB (873 words) - 18:15, 18 January 2024
- [[Category:Software]] Modeling software20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
- [[Category:Software]][[Category:biology]][[Category:NGS]]5 KB (708 words) - 15:31, 14 December 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (286 words) - 21:03, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]5 KB (607 words) - 19:38, 27 March 2023
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]2 KB (239 words) - 18:08, 19 August 2022
- [[Category:Software]][[Category:Biology]]2 KB (286 words) - 19:01, 12 August 2022
- {{ note|"project-367116221053" is the name that the developer of the "gdrive" software () provided to Google when registering the application for review and accep3 KB (444 words) - 14:06, 16 March 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.3 KB (344 words) - 12:41, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (288 words) - 13:25, 23 July 2020
- [[Category:Software]][[Category:Python]][[Category:Machine Learning]] __NOTOC__18 KB (2,983 words) - 18:58, 23 March 2023
- [[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.3 KB (334 words) - 19:23, 12 August 2022
- [[Category:Software]][[Category:math]]2 KB (251 words) - 18:38, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (256 words) - 21:29, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (317 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]3 KB (395 words) - 15:19, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (234 words) - 21:24, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]2 KB (275 words) - 16:38, 27 May 2022
- [[Category:Software]]12 KB (1,540 words) - 17:09, 21 December 2022
- [[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne3 KB (293 words) - 20:32, 24 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (269 words) - 13:51, 14 May 2021
- ...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A5 KB (842 words) - 17:26, 8 March 2023
- [[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (414 words) - 11:59, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (257 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]2 KB (229 words) - 20:05, 31 May 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}3 KB (313 words) - 18:07, 12 August 2022
- [[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]2 KB (277 words) - 19:16, 6 June 2023
- [[Category: software]] [[Category: biology]] [[Category: Machine Learning]]3 KB (393 words) - 20:43, 22 February 2024
- [[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]3 KB (426 words) - 14:18, 10 July 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (283 words) - 22:08, 27 August 2020
- [[Category:Software]][[Category:Phylogenetics]]2 KB (251 words) - 20:21, 26 May 2022
- [[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als3 KB (335 words) - 16:04, 22 February 2024
- [[Category:Software]][[Category:Math]][[Category:Programming]]2 KB (269 words) - 12:22, 26 August 2022
- [[Category:CLI]][[Category:Software]]8 members (0 subcategories, 0 files) - 15:29, 23 August 2022
- [[Category:Software]][[Category:Physics]]2 KB (279 words) - 16:19, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (340 words) - 17:48, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (306 words) - 20:02, 31 May 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (320 words) - 20:56, 12 August 2022
- [[Category:Software]][[Category:Programming]]3 KB (405 words) - 14:15, 26 February 2024
- [[Category:Software]][[Category:Phylogenetics]]2 KB (259 words) - 14:02, 6 December 2021
- [[Category:Software]][[Category:Phylogenetics]]2 KB (239 words) - 19:00, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...rl|https://bioinformatics.cragenomica.es/numgenomics/people/sebas/software/software.html}}3 KB (324 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (315 words) - 15:30, 19 August 2022
- [[Category:Software]][[Category:Biology]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.3 KB (372 words) - 15:01, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]2 KB (278 words) - 16:13, 10 June 2022
- [[Category:Software]]2 KB (253 words) - 20:07, 15 June 2023
- [[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter2 KB (276 words) - 19:03, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (253 words) - 22:49, 8 September 2020
- [[Category:Software]]3 KB (410 words) - 19:05, 31 January 2022
- [[Category:Software]][[Category:Genomics]]2 KB (273 words) - 20:02, 8 November 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (245 words) - 21:19, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo3 KB (332 words) - 18:51, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (260 words) - 15:39, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.2 KB (273 words) - 20:08, 12 August 2022
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- [[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}2 KB (251 words) - 16:40, 22 August 2022
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- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (411 words) - 19:05, 12 August 2022
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- [[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}4 KB (494 words) - 16:13, 9 January 2023
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- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}3 KB (406 words) - 22:30, 21 August 2022
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- [[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/octave/}}2 KB (333 words) - 15:22, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]] IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing dat2 KB (271 words) - 13:52, 14 May 2020
- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ctg.cncr.nl/software/magma}}2 KB (273 words) - 19:35, 23 February 2021
- [[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (363 words) - 13:51, 6 June 2022
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- [[Category:Software]][[Category:Statistics]][[Category:Data Science]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->5 KB (775 words) - 13:48, 15 September 2023
- [[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF3 KB (316 words) - 13:54, 21 October 2022
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- [[Category:Software]][[Category:File Management]][[Category:Web]][[Category:Programming]]2 KB (253 words) - 13:52, 21 October 2022
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- [[Category:Software]][[Category:NGS]][[Category:Biology]]3 KB (382 words) - 22:39, 21 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.2 KB (260 words) - 13:35, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (294 words) - 21:23, 6 December 2019
- Sequencing Software on HiPerGator [[Category:Software]][[Category:Research]]144 members (0 subcategories, 0 files) - 21:43, 24 October 2022
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- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://omics.pnl.gov/software/ScalaBLAST.php}}3 KB (318 words) - 20:34, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (246 words) - 22:25, 26 August 2020
- [[Category:Software]][[Category:Phylogenetics]] gs2 is a software to conduct a brand-new phylogenetic analysis method--the Graph Splitting (G2 KB (270 words) - 17:28, 4 June 2021
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- [[Category:Software]]7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://sco.h-its.org/exelixis/web/software/exabayes/}}7 KB (886 words) - 21:12, 21 December 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (303 words) - 22:23, 27 August 2020
- [[Category:Software]] This package contains a software implementation for joint label fusion and3 KB (390 words) - 20:31, 24 August 2022
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- [[Category:Software]][[Category:Math]][[Category:Animation]][[Category:Fluid Dynamics]][[Catego3 KB (337 words) - 14:56, 19 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] The open source clustering software available here implement the most commonly used clustering methods for gene2 KB (274 words) - 18:37, 12 August 2022
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- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}3 KB (337 words) - 12:37, 12 August 2022
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- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (317 words) - 18:22, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.2 KB (278 words) - 18:50, 1 June 2022
- [[Category:Software]][[Category:Biology]]2 KB (291 words) - 18:22, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (307 words) - 14:17, 15 August 2022
- [[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs2 KB (288 words) - 20:27, 24 August 2022
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- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->3 KB (371 words) - 22:38, 21 August 2022
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- [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBi2 KB (268 words) - 21:58, 27 April 2022
- [[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.3 KB (337 words) - 15:25, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (244 words) - 14:01, 11 June 2020
- [[Category:Software]]12 members (5 subcategories, 0 files) - 20:50, 2 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]3 KB (332 words) - 18:25, 18 August 2022
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- [[Category:Software]][[Category:Phylogenetics]]2 KB (258 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}2 KB (289 words) - 17:54, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse3 KB (340 words) - 18:24, 18 August 2022
- [[Category:Software]]33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Machine Learning]]2 KB (240 words) - 14:33, 15 August 2022
- [[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (341 words) - 19:35, 24 August 2022
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- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/trimetass/}}3 KB (344 words) - 20:52, 12 August 2022
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- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}3 KB (355 words) - 21:05, 6 December 2019
- [[Category:Software]][[Category:Biology]]2 KB (295 words) - 19:28, 10 December 2023
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.2 KB (249 words) - 20:15, 12 August 2022
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- [[Category:Software]][[Category:Search]]2 KB (248 words) - 14:33, 29 June 2021
- [[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}3 KB (402 words) - 14:56, 12 March 2024
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- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}4 KB (483 words) - 19:28, 12 August 2022
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- [[Category:Software]][[Category:Data]]40 members (0 subcategories, 0 files) - 21:45, 24 October 2022
- [[Category:Software]][[Category:Biology]] See individual software wiki pages for more details.598 bytes (81 words) - 20:53, 12 August 2022
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- [[Category:Software]][[Category:Utility]]11 KB (1,573 words) - 22:01, 15 December 2022
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- [[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo3 KB (336 words) - 16:24, 19 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]3 KB (350 words) - 14:38, 15 August 2022
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- [[Category:Software]] ...maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-tes4 KB (497 words) - 16:28, 15 December 2022
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- [[Category:Software]][[Category:Machine Learning]][[Category:Data Mining]]3 KB (336 words) - 22:06, 5 June 2023
- [[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th3 KB (390 words) - 18:12, 27 May 2022
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- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (397 words) - 18:18, 15 August 2022
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- [[Category:Software]][[Category:Library]][[Category:Math]] ...neural networks and deep learning. PyTorch also has a large user base and software ecosystem.5 KB (691 words) - 16:39, 14 December 2022
- [[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}2 KB (247 words) - 15:01, 10 June 2022
- [[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh2 KB (288 words) - 15:36, 9 March 2023
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- iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)3 KB (346 words) - 17:07, 27 May 2022
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- ==[[:Category:Applications|Software and Reference Data]] [[Image:Software.png|right|frameless|upright=0.1]]==4 KB (515 words) - 14:06, 30 March 2023
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- [[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}3 KB (386 words) - 20:20, 27 May 2022
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- [[Category:Software]][[Category:Phylogenetics]] Taiyaki is research software for training models for basecalling Oxford Nanopore reads.2 KB (240 words) - 18:58, 1 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Sequencing]]3 KB (441 words) - 19:20, 10 June 2022
- [[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.3 KB (323 words) - 17:32, 15 August 2022
- [[Category:Software]][[Category:library]][[Category:compiler]]3 KB (350 words) - 17:47, 15 August 2022
- [[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co3 KB (360 words) - 20:55, 12 August 2022
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- [[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]3 KB (354 words) - 18:40, 15 August 2022
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- [[Category:Software]][[Category:Genomics]]2 KB (261 words) - 21:12, 21 October 2022
- [[Category:Software]]3 KB (321 words) - 16:36, 16 November 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]2 KB (291 words) - 19:53, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (370 words) - 17:44, 2 November 2020
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (335 words) - 20:36, 8 March 2022
- [[Category:Software]]2 KB (239 words) - 16:59, 24 August 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]3 KB (426 words) - 19:27, 18 August 2022
- [[Category:Software]][[Category:Machine Learning]]3 KB (419 words) - 15:42, 25 August 2022
- [[Category:Software]][[Category:phylogenetics]]2 KB (287 words) - 14:18, 9 March 2020
- [[Category:Software]][[Category:Phylogenetics]]3 KB (309 words) - 15:35, 2 December 2020
- [[Category:Software]][[Category:CLI]]3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
- [[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}3 KB (375 words) - 20:33, 24 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Healthcare]]2 KB (291 words) - 14:33, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (258 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Molecular Dynamics]] DL_POLY is a general purpose classical molecular dynamics (MD) simulation software developed at Daresbury Laboratory by I.T. Todorov and W. Smith.2 KB (309 words) - 17:00, 6 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]2 KB (262 words) - 20:36, 12 August 2022
- [[Category:Software]][[Category:Biology]]2 KB (236 words) - 19:20, 12 August 2022
- [[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]2 KB (272 words) - 14:24, 11 October 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (333 words) - 20:44, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (268 words) - 20:28, 14 May 2020
- [[Category:Software]][[Category:Phylogenetics]]2 KB (260 words) - 13:48, 26 February 2021
- [[Category:Software]]33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
- [[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:3 KB (320 words) - 17:11, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (242 words) - 17:12, 1 June 2022
- [[Category:Software]]3 KB (351 words) - 15:41, 16 March 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (292 words) - 16:54, 22 August 2022
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- [[Category:Software]][[Category:Imaging]]3 KB (351 words) - 16:19, 27 May 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou5 KB (615 words) - 15:36, 14 December 2022
- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}3 KB (319 words) - 12:51, 10 September 2020
- [[Category:Software]][[Category:Phylogenetics]]3 KB (374 words) - 14:09, 23 April 2021
- ...in their storage trees. This is the most appropriate way to share data and software among group members.4 KB (682 words) - 15:25, 13 July 2023
- [[Category:Software]][[Category:Genomics]]3 KB (369 words) - 16:29, 15 October 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (248 words) - 21:11, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]] ...ased on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig leng3 KB (315 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.3 KB (355 words) - 12:42, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (269 words) - 12:30, 19 August 2022
- [[Category:Software]][[Category:Programming]]2 KB (237 words) - 15:56, 24 October 2023
- [[Category:Software]][[Category:Biology]]4 KB (474 words) - 14:41, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] The Enhanced Artificial Genome Engine (EAGLE) software is designed to simulate the behaviour of Illumina's Next Generation Sequenc2 KB (266 words) - 22:29, 26 August 2020
- [[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]2 KB (245 words) - 20:45, 11 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]4 KB (551 words) - 22:56, 21 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]2 KB (273 words) - 19:52, 12 August 2022
- [[Category:Software]][[Category:biology]][[Category:sequencing]]2 KB (253 words) - 17:04, 10 October 2022
- [[Category:Software]][[Category:Biology]][[Category:Sequencing]]3 KB (358 words) - 14:26, 14 April 2020
- [[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.2 KB (293 words) - 12:12, 26 August 2022
- [[Category:Software]]7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (331 words) - 16:52, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]4 KB (541 words) - 14:55, 14 December 2022
- [[Category:Software]]2 KB (279 words) - 17:38, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (331 words) - 13:29, 4 October 2021
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (294 words) - 21:23, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] If you use this software, please cite it along the dependencies it uses internally, at least:3 KB (300 words) - 14:11, 10 July 2023
- [[Category:Categories]][[Category:Software]]15 members (1 subcategory, 0 files) - 15:28, 23 August 2022
- [[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}2 KB (258 words) - 15:00, 15 August 2022
- [[Category:Software]][[Category:Biology]]2 KB (280 words) - 20:46, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v3 KB (324 words) - 20:54, 12 August 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]]2 KB (290 words) - 14:37, 21 August 2023
- [[Category:Software]][[Category:Machine Learning]]2 KB (267 words) - 16:52, 17 December 2021
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]2 KB (285 words) - 16:45, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (301 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]2 KB (258 words) - 19:07, 1 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (277 words) - 16:40, 22 August 2022
- [[Category:Software]][[Category:Compiler]]3 KB (399 words) - 17:37, 15 August 2022
- [[Category:Software]][[Category:Data Science]]3 KB (389 words) - 16:49, 21 August 2022
- [[Category:Software]][[Category:Data Science]][[Category:Library]]3 KB (397 words) - 13:26, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (249 words) - 15:29, 22 September 2020
- [[Category:Software]][[Category:genomics]][[Category:Biology]]2 KB (264 words) - 13:30, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (308 words) - 21:58, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (244 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]4 KB (453 words) - 13:39, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (305 words) - 13:52, 23 September 2021
- [[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs3 KB (414 words) - 14:42, 14 December 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] VirusFinder 2 is a new software tool for characterizing intra-host viruses through next generation sequenci3 KB (410 words) - 21:29, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (443 words) - 13:06, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Sequencing]]2 KB (273 words) - 16:14, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]4 KB (438 words) - 14:54, 15 August 2022
- [[Category:Software]]2 KB (262 words) - 13:36, 12 January 2024
- [[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden2 KB (293 words) - 18:39, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (297 words) - 20:29, 12 August 2022
- [[Category:Software]][[Category:phylogenetics]]2 KB (298 words) - 18:11, 15 April 2020
- [[Category:Software]][[Category:Biology]]2 KB (244 words) - 20:44, 27 January 2021
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (354 words) - 18:24, 12 August 2022
- [[Category:Software]][[Category:biology]][[Category:NGS]]3 KB (324 words) - 20:11, 24 August 2022
- [[Category:Software]] Each module in the software package was designed to be highly specific. This means that not all contami3 KB (332 words) - 17:35, 24 May 2023
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra2 KB (275 words) - 16:18, 10 June 2022
- [[Category:Software]]3 KB (299 words) - 20:02, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (286 words) - 14:11, 20 February 2023
- The full documentation for tiCrypt software can be found at [https://ticrypt.com/docs/frontend2/getting-started tiCrypt # Run the installer software for the tiCrypt Connect client and follow the prompts.6 KB (953 words) - 20:01, 18 July 2023
- [[Category:Software]][[Category:Biology]] NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An3 KB (325 words) - 15:55, 23 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (250 words) - 13:32, 23 June 2020
- [[Category:Software]][[Category:Phylogenetics]]2 KB (264 words) - 15:18, 15 August 2022
- [[Category:Software]]265 bytes (30 words) - 13:59, 30 June 2017
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