OptiType

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Description

optitype website  

OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.

Required Modules

Serial

  • optitype

System Variables

  • HPC_OPTITYPE_DIR - installation directory
  • HPC_OPTITYPE_BIN - executable directory
  • HPC_OPTITYPE_EXE - test directory
  • HPC_OPTITYPE_DOC - documentation directory
  • HPC_OPTITYPE_CONF - config directory