Search results

PyCogent
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (275 words) - 17:20, 1 June 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
GPhoCS
[[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim

3 KB (300 words) - 21:20, 6 December 2019
Vim
[[Category:Software]][[Category:Programming]][[Category:Language]]

3 KB (320 words) - 18:56, 21 August 2022
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
Slivar
[[Category:Software]][[Category:Biology]]

2 KB (295 words) - 19:28, 10 December 2023
QT
[[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} 

2 KB (257 words) - 20:57, 21 August 2022
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
Applications FAQ
...n package from a binary archive (wheel) that was built on a system against software libraries that are not compatible with HiPerGator. A typical error message > devtools::install_github("author/software")

4 KB (579 words) - 20:42, 16 October 2023
The silver searcher
[[Category:Software]][[Category:Search]]

2 KB (248 words) - 14:33, 29 June 2021
Category:Image Processing
[[Category:Software]]

14 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Redundans
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Qsiprep
[[Category:Software]] ...r processing diffusion-weighted MRI (dMRI) data. The main features of this software are:

3 KB (324 words) - 16:13, 17 October 2023
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
Jabba
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:21, 6 December 2019
TotalView
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (335 words) - 12:02, 26 August 2022
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
JCVI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 14:30, 4 September 2020
Panseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:12, 17 November 2021
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
GenePainter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 21:20, 6 December 2019
Category:Pipeline
[[Category:Biology]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:27, 23 August 2022
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
GroopM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:20, 6 December 2019
Tandem-Genotypes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:01, 1 June 2022
Julia
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Statistics]]

3 KB (412 words) - 20:49, 21 October 2022
Screen
[[Category:Software]][[Category:Programming]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/screen/}}

3 KB (441 words) - 22:30, 21 August 2022
OpenCV
[[Category:Software]][[Category:Library]]

2 KB (283 words) - 21:31, 6 December 2019
NanoSV
[[Category:Software]][[Category:Biology]][[Category:Genomics]] NanoSV is a software package that can be used to identify structural genomic variations in long-

2 KB (282 words) - 14:23, 19 August 2022
Portcullis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 19:18, 31 January 2022
Structure
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (325 words) - 16:03, 22 August 2022
Blocked Accounts
* Improper password in various SFTP software clients (FileZilla, etc.)

2 KB (337 words) - 21:37, 29 January 2024
PacMAP
[[Category:Software]][[Category:Genomics]]

3 KB (304 words) - 18:24, 11 February 2023
Meta-Tissue
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (328 words) - 19:24, 18 August 2022
Package-GFE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This software package is for estimating allele and genotype frequencies from nucleotide r

2 KB (280 words) - 16:45, 10 June 2022
BreakDancer
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:16, 6 December 2019
TESS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]]

3 KB (296 words) - 16:26, 22 August 2022
PolyGembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:45, 3 November 2020
ExpansionHunter
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:36, 8 March 2022
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
RIGERJ
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 21:24, 6 December 2019
Deprecation
[[Category:Software]] ...databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months after being added

9 KB (946 words) - 22:32, 15 December 2022
GoPHY
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:40, 12 November 2020
ViennaRNA
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (396 words) - 19:08, 10 June 2022
Platypus
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (435 words) - 19:21, 10 June 2022
Loter
[[Category:Software]] Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol

2 KB (297 words) - 17:15, 20 March 2023
Tigmint
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 21:29, 6 December 2019
Chimera
[[Category:Software]][[Category:Biology]][[Category:Modeling]]

3 KB (296 words) - 18:27, 12 August 2022
Momi
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (305 words) - 19:03, 4 April 2022
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
LSD2
[[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”

2 KB (269 words) - 20:45, 30 April 2020
Svim-asm
[[Category:Software]][[Category:Biology]]

3 KB (306 words) - 17:16, 31 May 2022
Bayenv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 19:03, 10 June 2022
BayeScan
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |{{#vardefine:url|http://cmpg.unibe.ch/software/BayeScan/index.html}}

3 KB (402 words) - 18:10, 12 August 2022
Parsnp
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (297 words) - 21:22, 6 December 2019
SiLiX
[[Category:Software]][[Category:Phylogenetics]] The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new alg

3 KB (287 words) - 21:24, 6 December 2019
Ansible
[[Category:Software]][[Category:Workflow Automation]]

3 KB (348 words) - 14:17, 12 August 2022
JACUSA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (240 words) - 19:08, 15 August 2022
Nanostripper
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (250 words) - 21:15, 13 May 2022
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
EVidenceModeler
[[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in

3 KB (311 words) - 14:59, 27 July 2020
CycleGan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:06, 14 April 2021
Satsuma2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:10, 1 June 2022
Ibdne
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (308 words) - 17:05, 27 May 2022
ElPrep
[[Category:Software]][[Category:Phylogenetics]]

3 KB (345 words) - 21:20, 6 December 2019
Guideseq
[[Category:Software]]

2 KB (259 words) - 18:08, 15 August 2022
DAWGPAWS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 21:20, 6 December 2019
Stable-diffusion
[[Category:Software]][[Category:Machine Learning]]

2 KB (245 words) - 17:04, 31 January 2023
OpenBabel
[[Category:Software]][[Category:Biology]]

2 KB (283 words) - 17:51, 19 August 2022
Amuse
[[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat

2 KB (287 words) - 20:34, 15 August 2022
ConPADE
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 22:14, 26 August 2020
Delineate
[[Category:Software]]

3 KB (303 words) - 20:46, 18 May 2021
Iaps
[[Category:Software]]

2 KB (250 words) - 18:42, 8 February 2023
Monolix
[[Category:Software]][[Category:Modeling]][[Category:Biology]]

2 KB (287 words) - 11:57, 19 August 2022
OpenPIV-python
[[Category:Software]][[Category:Programming]][[Category:Imaging]] OpenPIV is open source Particle Image Velocimetry analysis software.

2 KB (291 words) - 12:23, 26 August 2022
GFOLD
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (388 words) - 18:54, 10 June 2022
ShapeMapper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (387 words) - 21:24, 6 December 2019
Quarto
[[Category:Software]]

3 KB (327 words) - 14:09, 27 February 2024
Pandoc
[[Category:Software]][[Category:Utility]]

3 KB (300 words) - 16:31, 21 August 2022
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
Gepard
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 22:10, 27 August 2020
MuSE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (333 words) - 13:23, 19 July 2021
FrameDP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (249 words) - 15:07, 10 June 2022
Pygot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (248 words) - 21:24, 6 December 2019
Hpsandbox
[[Category:Software]]

2 KB (264 words) - 22:27, 1 February 2023
RepeatExplorer
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (278 words) - 21:44, 21 August 2022
TRNAscan-Se
[[Category:Software]][[Category:biology]][[Category:NGS]] ...nce analysis, but is applicable to other DNAs as well. It applies our COVE software (see below) with a carefully built tRNA covariance model, while getting aro

3 KB (389 words) - 20:53, 12 August 2022
Subversion
[[Category:Software]][[Category:Revision Control]]

2 KB (277 words) - 20:07, 10 June 2022
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
Vcontact
[[Category:Software]][[Category:Phylogenetics]]

3 KB (358 words) - 20:04, 27 May 2022
SE-MEI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 22:30, 21 August 2022
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
Megalodon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 22:24, 8 September 2020
DScribe
[[Category:Software]][[Category:Machine Learning]]

2 KB (267 words) - 16:52, 17 December 2021
Deepvariant
[[Category:Software]]

3 KB (356 words) - 13:17, 16 April 2024
SimSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (283 words) - 22:59, 21 August 2022
ViewBS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (384 words) - 17:30, 22 August 2022
Illumina-utils
[[Category:Software]][[Category:Phylogenetics]]

2 KB (295 words) - 18:43, 15 August 2022
ReFrame
[[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]

2 KB (240 words) - 21:40, 21 August 2022
RNAsalsa
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (368 words) - 21:24, 6 December 2019
Metaphlan
[[Category:Software]][[Category: Phylogenetics]]

2 KB (258 words) - 15:21, 26 August 2022
Liftoff
[[Category:Software]][[Category:Phylogenetics]]

3 KB (399 words) - 13:14, 23 September 2020
Ksrates
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (264 words) - 13:30, 15 August 2022
Perl
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (811 words) - 17:56, 2 January 2023
GUAVA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 21:20, 6 December 2019
LAStools
[[Category:Software]][[Category:Imaging]]

2 KB (292 words) - 19:37, 15 August 2022
FFTW
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (223 words) - 16:41, 15 August 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
Linksbrowser
[[Category:Software]][[Category:Web]]

2 KB (257 words) - 17:50, 15 August 2022
DCMTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]][[Category:Neuroscience]] ...+. It comes in complete source code and is made available as "open source" software.

3 KB (304 words) - 20:31, 10 June 2022
FlairNLP
[[Category:Software]][[Category:Machine Learning]]

3 KB (419 words) - 15:42, 25 August 2022
QRNA
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}

2 KB (251 words) - 17:39, 1 June 2022
Maskrc-svg
[[Category:Software]][[Category:Genomics]]

2 KB (255 words) - 20:32, 26 January 2023
OneFormer
[[Category:Software]][[Category:Imaging]][[Category:Image Processing]][[Category:AI]]

2 KB (246 words) - 14:25, 7 April 2023
Tensorboard
...separate workload within a HiPerGator Desktop session. Many neural network software frameworks are able to stream training data to a TensorBoard log file.

2 KB (231 words) - 21:03, 12 December 2023
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
PILON
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:phylogenetics]] Pilon is a software tool which can be used to:

3 KB (321 words) - 20:23, 12 August 2022
Ucsc-fafiltern
[[Category:phylogenetics]][[Category:Software]]

2 KB (244 words) - 17:11, 22 August 2022
SHRiMP
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril

2 KB (269 words) - 22:55, 21 August 2022
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
Release
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (272 words) - 14:24, 11 October 2022
Training
===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].

3 KB (484 words) - 13:21, 10 January 2023
RiboTaper
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/}}

3 KB (293 words) - 13:48, 20 May 2020
DecontaMiner
[[Category:Software]]

3 KB (321 words) - 14:56, 2 March 2021
CMWP
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (329 words) - 17:57, 10 June 2022
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
GeneMarkS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 16:45, 27 May 2022
Genrich
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
KaKs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

2 KB (281 words) - 19:18, 15 August 2022
Ont tutorial cas9
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 18:38, 2 June 2022
BrainIAK
[[Category:Software]][[Category:Imaging]]

3 KB (351 words) - 16:19, 27 May 2022
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
RepeatSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 15:29, 27 May 2022
ResFinder
[[Category:Software]]

3 KB (342 words) - 18:41, 23 April 2021
MinkowskiEngine
[[Category:Software]][[Category:Machine Learning]]

2 KB (256 words) - 17:52, 31 May 2022
Ksnp
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Variant Calling]] kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds

3 KB (327 words) - 12:56, 15 August 2022
Graph annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 21:20, 6 December 2019
PAPI
[[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} 

3 KB (360 words) - 16:36, 21 August 2022
ALLMAPS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 21:11, 6 December 2019
Meson
[[Category:Software]][[Category:Programming]]

2 KB (237 words) - 15:56, 24 October 2023
QD
[[Category:Software]][[Category: Library]][[Category: Math]][[Category:Compiler]]

2 KB (271 words) - 17:47, 15 August 2022
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
Eagle-rc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:30, 26 August 2020
Cliquesnv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 20:24, 1 May 2024
SNPGenie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (423 words) - 18:41, 1 June 2022
DS9
[[Category:Software]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (322 words) - 13:07, 6 June 2022
PGAP
[[Category:Software]]

3 KB (393 words) - 14:29, 6 July 2022
Hylite
[[Category:Software]]

3 KB (325 words) - 21:51, 24 February 2023
Category:Compiler
[[Category:Software]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For

24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
Plasme
[[Category:Software]]

3 KB (375 words) - 18:08, 3 April 2024
Preseq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://smithlab.usc.edu/plone/software/librarycomplexity}}

3 KB (303 words) - 20:26, 12 August 2022
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
HmmCleaner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:25, 27 August 2020
Convert3D
[[Category:Software]]

2 KB (279 words) - 17:38, 15 August 2022
Nsight
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

3 KB (316 words) - 20:39, 24 August 2022
Groovy
[[Category:Software]][[Category:Programming]]

2 KB (281 words) - 21:21, 6 December 2019
TRITONSERVER
[[Category:Software]][[Category:Machine Learning]]

2 KB (298 words) - 20:06, 21 August 2022
AdmixTools
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes

3 KB (400 words) - 20:50, 11 August 2022
Tbb
[[Category:Software]][[Category:library]]

2 KB (259 words) - 21:29, 6 December 2019
Bloomfiltertrie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:18, 6 December 2019
SMS
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 20:41, 12 August 2022
STAR-CCM+
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 16:01, 22 August 2022
Mireap
[[Category:Software]][[Category:Biology]]

2 KB (258 words) - 20:43, 18 August 2022
Tiara
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 16:36, 22 August 2022
Novoalign
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (370 words) - 17:19, 19 August 2022
MECAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 18:29, 18 August 2022
Raven
[[Category:Software]][[Category:assembly]]

2 KB (284 words) - 21:14, 20 November 2023
ADMB
[[Category:Software]][[Category:Math]][[Category:Modeling]]

3 KB (302 words) - 20:49, 11 August 2022
Spidey
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (295 words) - 20:44, 12 August 2022
PySLURM
[[Category:Software]][[Category:Scheduler Apps]]

2 KB (235 words) - 18:29, 11 November 2022
CLHEP
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 14:10, 13 June 2022
HipSTR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (340 words) - 14:50, 1 October 2020
RGAugury
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (354 words) - 21:29, 30 November 2023
Gmap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (450 words) - 17:11, 15 August 2022
Resolve
[[Category:Software]] ...tion, visual effects, motion graphics and audio post production all in one software tool.

2 KB (261 words) - 13:59, 25 July 2023
Tax4Fun
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 18:29, 4 February 2020
Python
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (670 words) - 19:42, 3 February 2023
Micop
[[Category:Software]][[Category:Genomics]]

2 KB (269 words) - 16:40, 27 September 2022
Dynare
[[Category:Software]][[Category:Math]] Dynare is a software platform for handling a wide class of economic models, in particular dynami

3 KB (382 words) - 21:20, 6 December 2019
Coevol
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (399 words) - 18:37, 12 August 2022
Quantisnp
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (297 words) - 20:29, 12 August 2022
Python-core
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (318 words) - 20:04, 21 August 2022
Phynd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:13, 15 April 2020
UNCALLED
[[Category:Software]]

2 KB (281 words) - 20:53, 12 August 2022
Pbsmrtpipe
[[Category:Software]][[Category:Biology]][[Category:Programming]]

2 KB (239 words) - 18:05, 15 August 2022
TensorFlow
[[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a

6 KB (790 words) - 15:25, 14 December 2022
Pbcore
[[Category:Software]][[Category:biology]]

2 KB (244 words) - 20:16, 12 August 2022
AMICO
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

2 KB (247 words) - 12:40, 12 August 2022
Bsmap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Biology]] BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated C

3 KB (304 words) - 18:22, 12 August 2022
Giggle
[[Category:Software]]

2 KB (268 words) - 20:58, 24 February 2023
How To ResVault
The full documentation for tiCrypt software can be found at [https://ticrypt.com/docs/frontend2/getting-started tiCrypt # Run the installer software for the tiCrypt Connect client and follow the prompts.

6 KB (953 words) - 20:01, 18 July 2023
Sputnik
[[Category:Software]][[Category:Biology]]

2 KB (311 words) - 15:50, 22 August 2022
Finesse
[[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp

3 KB (347 words) - 00:01, 9 July 2020
IsoSel
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://doua.prabi.fr/software/isosel}}

3 KB (345 words) - 14:29, 26 March 2021
Basemount
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (375 words) - 18:50, 10 June 2022
GROMACS
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

4 KB (556 words) - 19:16, 5 January 2023
Sourmash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 15:45, 22 August 2022
Phyluce
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultr

4 KB (517 words) - 18:23, 21 August 2022
IsPcr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:22, 6 December 2019
Dsistudio
[[Category:Software]][[Category:Machine Learning]] DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsycholo

2 KB (277 words) - 20:10, 23 May 2022
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
CBGpipe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:59, 26 August 2020
News:2021-05-10
Software profiling is key to achieve the best performance on a system. It is importa * Software resources

5 KB (750 words) - 16:47, 23 August 2022
LFMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (337 words) - 19:50, 15 August 2022
WhatsHap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b

2 KB (269 words) - 21:29, 6 December 2019
Read2tree
[[Category:Software]][[Category:Phylogenetics]] read2tree is a software tool that allows users to obtain alignment matrices for tree inference. It

2 KB (292 words) - 18:42, 12 July 2023
Z1Plus
[[Category:Software]]

2 KB (293 words) - 19:36, 6 September 2023
LASTZ
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (284 words) - 19:30, 12 August 2022
Jasper
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (354 words) - 16:42, 14 December 2023
Stata
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|1}} 

4 KB (621 words) - 15:23, 5 January 2023
KisSplice
[[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It

3 KB (359 words) - 19:33, 15 August 2022
FastGEAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] FastGEAR is a software for analyzing sequence alignments.

3 KB (313 words) - 20:13, 18 October 2022
PyEGA3
[[Category:Software]]

3 KB (340 words) - 19:01, 29 June 2021
Localbrainage
[[Category:Software]][[Category:Biology]][[Category:Machine Learning]]

2 KB (238 words) - 19:30, 12 August 2022
FAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:21, 6 December 2019
Anchorwave
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (367 words) - 21:10, 20 September 2023
LAMP
[[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po

2 KB (245 words) - 19:29, 12 August 2022
Vcflib
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (390 words) - 20:54, 12 August 2022
VASP
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

4 KB (550 words) - 19:00, 21 July 2023
Circos
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}

3 KB (409 words) - 13:35, 15 August 2022
Jo
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
Hapbin
[[Category:Software]]

3 KB (292 words) - 18:12, 15 August 2022
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
JVARKIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:21, 6 December 2019
Vaspkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:51, 1 June 2022
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
Go
[[Category:Software]][[Category:Language]]

3 KB (305 words) - 19:05, 6 June 2022
Textract
[[Category:Software]]

3 KB (304 words) - 13:55, 21 October 2022
Hyb
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (247 words) - 15:07, 10 June 2022
SCRATCH-1D
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (381 words) - 20:35, 12 August 2022
DAKOTA
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

4 KB (484 words) - 18:26, 14 December 2022
XY-Meta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 16:15, 6 June 2022
Ezaai
[[Category:Software]][[Category:biology]][[Category:Phylogenetics]]

2 KB (282 words) - 15:13, 15 August 2022
TPMcalculator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 19:45, 1 June 2022
LibMesh
[[Category:Software]][[Category:Math]]

2 KB (281 words) - 19:51, 15 August 2022
Bax2bam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 14:05, 10 December 2019
GULP
[[Category:Software]][[Category:Material Science]]

3 KB (311 words) - 18:09, 15 August 2022
PICRUSt
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 18:28, 10 June 2022
FGTPartitioner
[[Category:Software]] ...stry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030

2 KB (266 words) - 19:05, 28 June 2023
MRIcron
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (329 words) - 20:33, 24 August 2022
Pufferfish
[[Category:Software]][[Category:Biology]]

3 KB (351 words) - 17:32, 31 July 2023
Popcorn
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (260 words) - 18:49, 21 August 2022
Simulia
[[Category:Software]][[Category:Simulation]][[Category:Visualization]]

2 KB (252 words) - 18:23, 1 June 2022
BAM-matcher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 21:07, 6 December 2019
GeneMarkS-T
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:25, 2 June 2022
OmniCLIP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 14:52, 12 November 2020
RELION
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (434 words) - 21:42, 21 August 2022
RStudio
[[Category:Software]][[Category:Statistics]]

3 KB (461 words) - 19:51, 18 July 2023
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022

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