Search results

BayesAss
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 21:13, 6 December 2019
BESST
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 12:51, 15 August 2022
Blitz
[[Category:Software]][[Category:Library]]

3 KB (303 words) - 21:19, 6 December 2019
Albumentations
[[Category:Software]][[Category:Machine Learning]][[Category:Imaging]][[Category:Image Processi

2 KB (263 words) - 12:33, 12 August 2022
Blast2GO CLI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (282 words) - 20:19, 24 August 2022
SOAPnuke
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:12, 6 April 2020
Meta-Marc
[[Category:Software]][[Category:Phylogenetics]] ...is not intended to be used as a final annotation or all-in-one tool; this software simply offers the user another view of complex metagenomic data. Users are

3 KB (336 words) - 14:51, 20 January 2021
Tophat
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (366 words) - 16:39, 22 August 2022
FastANI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (380 words) - 21:21, 6 December 2019
CWLtool
[[Category:Software]][[Category:Workflow Automation]][[Category:Scheduler Apps]]

3 KB (326 words) - 18:29, 11 November 2022
Desmond
[[Category:Software]][[Category:Biology]]

2 KB (256 words) - 20:07, 6 April 2023
Draft:Software Installation Policies and Guidelines
==Availabile Linux Software installed in ResVault==

2 KB (262 words) - 18:47, 20 February 2023
Flex
[[Category:Software]][[Category:Programming]]

2 KB (266 words) - 19:54, 3 June 2022
Goatools
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 03:26, 2 January 2023
BEDOPS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (317 words) - 12:48, 15 August 2022
REPdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (327 words) - 21:43, 21 August 2022
MSMC-Tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 19:12, 9 June 2020
LIQA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 20:03, 15 August 2022
FASTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (320 words) - 18:54, 12 August 2022
UDUNITS
[[Category:Software]][[Category:Library]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/udunits/}}

2 KB (279 words) - 17:17, 22 August 2022
Hardware Accelerated GUI Sessions
[[Category:Software]] ==Launching Hardware (HW) Accelerated GUI software==

342 bytes (45 words) - 13:18, 12 April 2023
QTLtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 20:58, 21 August 2022
Yolov5
[[Category:Software]][[Category:Machine Learning]]

2 KB (289 words) - 23:52, 31 January 2023
SIGffRid
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:17, 1 June 2022
Category:Imaging
[[Category:Software]]

46 members (0 subcategories, 0 files) - 21:45, 24 October 2022
VirtualCell
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:29, 6 December 2019
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
NetCDF-C
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (278 words) - 14:47, 19 August 2022
GFF3toolkit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (335 words) - 20:48, 23 May 2022
DVGfinder
[[Category:Software]]

3 KB (319 words) - 13:59, 31 July 2023
MPACK
[[Category:Software]][[Category:Library]]

3 KB (307 words) - 17:03, 10 June 2022
Concaterpillar
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 22:10, 26 August 2020
NPhase
[[Category:Software]]

2 KB (275 words) - 17:53, 15 August 2022
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
MET
[[Category:Software]]

3 KB (365 words) - 20:04, 24 August 2022
SoX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
MORPHEUS
[[Category:Software]][[Category:Machine Learning]]

3 KB (337 words) - 19:01, 14 March 2023
Ncbi-genome-download
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (241 words) - 20:42, 7 February 2024
CPLEX
[[Category:Software]][[Category:Climate]] |{{#vardefine:url|http://www-01.ibm.com/software/commerce/optimization/cplex-optimizer/}}

2 KB (264 words) - 19:35, 24 August 2022
Vt
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (273 words) - 16:13, 10 June 2022
GDSL
[[Category:Software]][[Category:Library]]

3 KB (305 words) - 15:37, 6 June 2022
Kalign
[[Category:Software]]

2 KB (265 words) - 19:28, 12 August 2022
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
VASP make
[[Category:Software]]

2 KB (249 words) - 03:23, 17 April 2018
Miniprot
[[Category:Software]]

2 KB (246 words) - 19:48, 31 August 2023
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
MstatX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (288 words) - 21:22, 6 December 2019
Minimac
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 20:11, 18 August 2022
HUMAnN
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (327 words) - 14:26, 11 October 2022
Weka
[[Category:Software]][[Category:Machine Learning]][[Category:Statistics]] Weka is tried and tested open source machine learning software that can be accessed through a graphical user interface, standard terminal

3 KB (304 words) - 16:07, 6 June 2022
FASTRAL-constrained
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:25, 15 August 2022
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
SVDetect
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (303 words) - 20:46, 12 August 2022
Checkv
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (278 words) - 13:58, 18 October 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
HAPLOSWEEP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 21:20, 6 December 2019
Nanopolish
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:38, 10 June 2022
SWIG
[[Category:Software]][[Category:library]][[Category:Programming]][[Category:Compiler]] ...ort its parse tree in the form of XML and Lisp s-expressions. SWIG is free software and the code that SWIG generates is compatible with both commercial and non

3 KB (414 words) - 20:04, 21 August 2022
Mriqc
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (296 words) - 20:33, 24 August 2022
ClinicaDL
[[Category:Software]][[Category:Biology]][[Category:imaging]][[Category:Machine Learning]] ...data with deep learning methods. ClinicaDL install includes the 'clinica' software platform for clinical research studies involving patients with neurological

3 KB (323 words) - 13:41, 15 August 2022
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
Stringtie
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:NGS]][[Category:Seque |{{#vardefine:url|http://ccb.jhu.edu/software/stringtie/}}

3 KB (301 words) - 20:45, 12 August 2022
Alevin-fry
[[Category:Software]]

3 KB (320 words) - 18:28, 9 February 2023
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
Paralyzer
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/PARalyzer_85/}}

3 KB (352 words) - 18:19, 27 May 2022
Circlator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 13:34, 15 August 2022
Redis
[[Category:Software]][[Category:Data Science]][[Category:Database]]

2 KB (267 words) - 21:39, 21 August 2022
PhyloFlash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 00:09, 29 October 2020
RMATS-turbo
[[Category:Software]]

2 KB (292 words) - 18:14, 8 March 2022
Trimmomatic
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (522 words) - 20:52, 12 August 2022
DDT
[[Category:Software]][[Category:Utility]]

5 KB (754 words) - 19:24, 30 October 2023
Odgi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:11, 15 July 2021
Apptainer
[[Category:Software]][[Category:Workflow Automation]] or even create a shell in the software environment provided by the container with

4 KB (609 words) - 16:30, 12 February 2024
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
Ubuntu
[[Category:Software]][[Category:Linux]] Ubuntu is an open source software operating system that runs from the desktop, to the cloud, to all your inte

3 KB (321 words) - 19:57, 14 February 2024
HybPiper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (349 words) - 18:36, 10 June 2022
CGAL
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (293 words) - 15:32, 6 June 2022
Consulting
* Get priority help with software, hardware, coding, or architecture

2 KB (378 words) - 18:33, 13 June 2023
Tracula
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]

3 KB (342 words) - 20:51, 12 August 2022
ABRicate
[[Category:Software]][[Category:Phylogenetics]] If you publish the results of Abricate please cite both the software and the appropriate database you used with --db

3 KB (314 words) - 17:27, 27 April 2020
Mikado
[[Category:Software]]

4 KB (495 words) - 19:45, 18 August 2022
ALLPATHS-LG
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}

2 KB (299 words) - 12:36, 12 August 2022
CIRI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 21:11, 6 December 2019
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
Phylonet
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzing and reconstructing reticulate evolutionary histories,

2 KB (263 words) - 21:23, 6 December 2019
LRBinner
[[Category:Software]]

5 KB (527 words) - 14:45, 14 December 2022
PacBio
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:Workflow Automation]] |{{#vardefine:url|https://www.pacb.com/products-and-services/analytical-software/devnet/}}

2 KB (250 words) - 20:10, 24 August 2022
Bamsnap
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 16:14, 27 May 2022
Nipype
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] neuroimaging software and facilitates interaction between these packages

3 KB (348 words) - 20:07, 12 August 2022
VTC
[[Category:Software]][[Category:Biology]]

3 KB (364 words) - 20:55, 12 August 2022
HASLR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 19:53, 17 August 2020
Isonclust2
[[Category:Software]]

3 KB (303 words) - 15:23, 28 October 2022
MITE-Hunter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (250 words) - 15:05, 10 June 2022
Mauve
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (448 words) - 19:49, 12 August 2022
MarginPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:22, 6 December 2019
PyHIST
[[Category:Software]]

4 KB (567 words) - 16:12, 22 December 2022
UCX
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]]

2 KB (244 words) - 12:02, 26 August 2022
File:Software.png
software icon for main menu...possibly

(500 × 500 (15 KB)) - 13:53, 24 June 2022
Cytoscape
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] Cytoscape is an open source software platform for visualizing molecular interaction networks and biological path

3 KB (334 words) - 14:23, 15 August 2022
ZEO++
[[Category:Software]][[Category:Chemistry]] Zeo++ is a open source software for performing high-throughput geometry-based analysis of porous materials

3 KB (424 words) - 19:47, 27 May 2022
ZUMIS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (302 words) - 17:55, 22 August 2022
Trycycler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 18:13, 22 July 2021
SOAPdenovo-Trans
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (283 words) - 00:05, 22 August 2022
SST-Core Install
[[SST-Core|Back to SST-Core page]][[Category:Software]]

1 KB (195 words) - 14:50, 16 August 2017
MSTmap
[[Category:Software]][[Category:Phylogenetics]] MSTmap is a software tool that is capable of constructing genetic linkage maps efficiently and a

3 KB (354 words) - 13:45, 25 March 2020
MHAP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (270 words) - 16:15, 10 June 2022
MCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (372 words) - 18:28, 18 August 2022
Yagcloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]

2 KB (265 words) - 19:07, 1 April 2024
OMSV
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:49, 19 August 2022
CUBE
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] |{{#vardefine:url|http://www.scalasca.org/software/cube-4.x}}

3 KB (329 words) - 14:14, 15 August 2022
HELEN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 22:22, 27 August 2020
Category:Software
Or you can browse through the sub-categories or software package names in the table below. To add a documentation page for a new piece of software installed into /apps please go to [[Add New App Page]].

2,146 members (62 subcategories, 0 files) - 19:53, 20 February 2024
Resistify
[[Category:Software]]

2 KB (264 words) - 16:44, 6 February 2024
SeqyClean
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (312 words) - 22:41, 21 August 2022
Dram
[[Category:Software]]

3 KB (361 words) - 14:11, 21 October 2022
MAGeCKFlute
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 20:24, 15 August 2022
Panaroo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (289 words) - 19:33, 13 June 2023
Tmux
[[Category:Software]][[Category:Programming]]

2 KB (265 words) - 16:38, 22 August 2022
VAMPIR
[[Category:Software]][[Category:Performance Analysis]]

3 KB (321 words) - 17:22, 22 August 2022
Mathematica
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 22:21, 8 September 2020
TaxonKit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:01, 13 December 2021
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
EQTLA
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (269 words) - 18:52, 12 August 2022
SRA-Human-Scrubber
[[Category:Software]]

3 KB (411 words) - 14:01, 27 May 2022
SICER
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software.htm}}

2 KB (279 words) - 16:35, 10 June 2022
Coot
[[Category:Software]][[Category:Modeling]]

3 KB (300 words) - 21:17, 6 December 2019
QualiMap
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (326 words) - 19:32, 24 August 2022
Slurm-drmaa
[[Category:Software]][[Category:library]][[Category:Scheduler Apps]][[Category:Programming]] ..., portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.

3 KB (316 words) - 14:30, 11 July 2023
AtomMan
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 14:16, 22 September 2020
Freyja
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]][[Category:Biology]]

2 KB (289 words) - 16:49, 15 August 2022
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
Hapsembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (332 words) - 18:15, 15 August 2022
Ancestryhmm
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (291 words) - 21:25, 9 May 2023
VCF-kit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 17:26, 22 August 2022
Platanus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 21:23, 6 December 2019
KIM
[[Category:Software]][[Category:Simulation]]

3 KB (322 words) - 19:19, 15 August 2022
Protobuf
[[Category:Software]][[Category:web]][[Category:library]]

2 KB (280 words) - 18:02, 15 August 2022
Pyroms
[[Category:Software]][[Category:Geospatial]]

2 KB (287 words) - 20:27, 24 August 2022
Pymesh
[[Category:Software]]

2 KB (271 words) - 16:09, 9 March 2023
IGTP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Oliver Eulenstein, "iGTP: A software package for large-scale gene tree

3 KB (318 words) - 19:06, 12 August 2022
Circexplorer3
[[Category:Software]]

2 KB (271 words) - 15:06, 18 January 2023
Shortbred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:12, 24 November 2020
BppSuite
[[Category:Software]][[Category:Genomics]]

2 KB (248 words) - 15:37, 9 December 2022
Saffrontree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (400 words) - 17:17, 31 May 2022
Evigene
[[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl

3 KB (372 words) - 21:21, 6 December 2019
Singularity
[[Category:Software]][[Category:Workflow Automation]]

3 KB (410 words) - 21:30, 6 February 2023
ContaVect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 20:40, 10 June 2022
Epoch
[[Category:Software]][[Category:Astronomy]]

2 KB (250 words) - 13:13, 6 June 2022
MGLTools
[[Category:Software]] These software tools are highly integrated and based on reusable software

3 KB (357 words) - 17:03, 6 June 2022
3d-dna
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (328 words) - 17:51, 10 June 2022
Subphaser
[[Category:Software]]

2 KB (275 words) - 20:42, 28 April 2023
Nilearn
[[Category:Software]][[Category:Phylogenetics]]

2 KB (284 words) - 17:17, 19 August 2022
Blast2GO
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

6 KB (920 words) - 14:08, 16 March 2023
Survival Kit
[[Category:Software]][[Category:Healthcare]] The Survival Kit is primarily intended to fill a gap in the software available to animal breeders who generally tend to use extremely large data

2 KB (263 words) - 16:11, 22 August 2022
Matlab
[[Category:Software]][[Category:Language]][[Category:Math]] |{{#vardefine:exe|1}} 

9 KB (1,361 words) - 16:06, 28 November 2023
GEMMA
[[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode

2 KB (279 words) - 21:21, 6 December 2019
MMvec
[[Category:Software]][[Category:Chemistry]]

2 KB (238 words) - 20:51, 18 August 2022
Get homologues
[[Category:Software]][[Category:Biology]][[Category:Genomics]] An open-source software package that builds on popular orthology-calling approaches making highly c

3 KB (306 words) - 21:20, 6 December 2019
Cupy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 19:58, 23 May 2022
Scalpel
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (239 words) - 22:07, 21 August 2022
CMS
[[Category:Software]][[Category:Biology]]

3 KB (317 words) - 21:02, 6 December 2019
BRM
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:54, 26 August 2020
GCE
[[Category:Software]]

3 KB (311 words) - 18:57, 12 August 2022
Platon
[[Category:Software]] <code>Robertson J., Nash J. H. E. (2018) MOB-suite: Software Tools for Clustering, Reconstruction and Typing of Plasmids From Draft Asse

4 KB (437 words) - 17:14, 14 December 2022
Mfold
[[Category:Software]][[Category:Biology]][[Category:Structure]]

2 KB (277 words) - 19:51, 12 August 2022
Gephi
[[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.

3 KB (337 words) - 17:42, 11 January 2023
SplAdder
[[Category:Software]][[Category:Phylogenetics]] ...lternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized format

3 KB (304 words) - 15:50, 22 August 2022
Infernal
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (305 words) - 19:31, 24 August 2022
Ydata-profiling
[[Category:Software]][[Category:Machine Learning]][[Category:Artificial Intelligence]]

2 KB (280 words) - 19:05, 1 December 2023
NWChem
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

3 KB (379 words) - 13:53, 6 June 2022
Wise
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (321 words) - 21:29, 6 December 2019
Epiteome
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 15:06, 15 August 2022
NLP
[[Category:Software]][[Category:Machine Learning]][[Category:Data Science]][[Category:Help]] This page describes the collection of Natural language processing software on HiperGator. Natural Language Processing (NLP) is a part of artificial in

7 KB (989 words) - 19:51, 10 May 2024
SIFT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 20:40, 12 August 2022
MACH
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] haplotypes thereof as proxies. MACH software implements a computationally

3 KB (363 words) - 20:23, 15 August 2022
Mapdamage
[[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]

3 KB (299 words) - 21:28, 16 September 2022
Category:Astronomy
[[Category:Software]]

9 members (0 subcategories, 0 files) - 16:17, 3 June 2022
MetaBAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 21:21, 6 December 2019
Healthcare and Life Sciences
[[Category:Software]][[Category:Machine Learning]][[Category:Data Science]][[Category:Help]] ...e potential to revolutionize human health and medical research by enabling software to learn from past examples and make informed decisions in life sciences. R

4 KB (529 words) - 04:22, 10 May 2024
PAUDA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/pauda/}}

3 KB (367 words) - 17:03, 21 August 2022
Category:Web
[[Category:Software]]

11 members (1 subcategory, 0 files) - 19:51, 22 August 2022
BEAST2-XML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 14:20, 2 September 2020
Physher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 15:28, 16 November 2021
WDSSII
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (299 words) - 20:05, 24 August 2022
GASVPro
[[Category:Software]][[Category:Biology]][[Category:NGS]] GASV (Geometric Analysis of Structural Variants) is software for identifying and structural variants (SVs) from paired-end sequencing da

2 KB (248 words) - 18:57, 12 August 2022
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
PyCogent
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (275 words) - 17:20, 1 June 2022
TEtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (257 words) - 21:29, 6 December 2019
MuTect
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 16:33, 10 June 2022
Theano
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:GPU]] |{{#vardefine:url|http://www.deeplearning.net/software/theano/}}

3 KB (345 words) - 15:58, 6 June 2022
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
SCOP
[[Category:Software]]

2 KB (295 words) - 17:31, 15 August 2022
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
GCC
[[Category:Software]][[Category: Compiler]]

2 KB (251 words) - 16:55, 15 August 2022
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
Category:Image Processing
[[Category:Software]]

14 members (0 subcategories, 0 files) - 17:22, 3 June 2022
SMARTdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (296 words) - 21:24, 6 December 2019
VarDictJava
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 17:23, 22 August 2022
Sate
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://phylo.bio.ku.edu/software/sate/sate.html}}

7 KB (910 words) - 20:43, 21 December 2022
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
Moni
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (341 words) - 13:31, 15 August 2022
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
GEM
[[Category:Software]] [[Category:Biology]] [[Category:NGS]][[Category:Sequencing]]

2 KB (254 words) - 17:00, 15 August 2022
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
Pbrt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 18:20, 27 May 2022
LoRMA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (301 words) - 14:34, 18 October 2022
BIOM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (272 words) - 21:02, 6 December 2019
Minimap2
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
EMMAX
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]]

3 KB (304 words) - 15:06, 15 August 2022
Open OnDemand
[[Category:Software]][[Category:GUI]]

7 KB (1,059 words) - 16:46, 5 May 2023
Scallop
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 14:44, 26 January 2021
ABySS
[[Category:Software]][[Category:Biology]][[Category:De Novo]] |{{#vardefine:url|http://www.bcgsc.ca/platform/bioinfo/software/abyss}}

2 KB (315 words) - 16:17, 19 August 2022
Fgbio
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:20, 6 December 2019
Pomoxis
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (285 words) - 18:48, 21 August 2022
Opennmt-py
[[Category:Software]][[Category:Language]][[Category:Machine_Learning]]

2 KB (272 words) - 20:14, 6 April 2023
Corset
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...gram to go from a de novo transcriptome assembly to gene-level counts. Our software takes a set of reads that have been multi-mapped to the transcriptome (wher

3 KB (309 words) - 17:09, 10 June 2022
FRAMA
[[Category:Software]][[Category:biology]]

2 KB (236 words) - 21:21, 6 December 2019
Category:GPU
[[Category:Software]]

11 members (1 subcategory, 0 files) - 18:36, 6 June 2022
GLPK
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|http://www.gnu.org/software/glpk/glpk.html}}

2 KB (272 words) - 17:11, 15 August 2022
Stampy
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (327 words) - 20:45, 12 August 2022
DSuite
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (244 words) - 17:17, 2 June 2022
Pplacer
[[Category:Software]]

2 KB (282 words) - 15:45, 19 August 2022
PASA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (687 words) - 21:04, 4 January 2023
SpinalCordToolbox
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:43, 1 June 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
CodonPhyML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 13:25, 23 July 2020
Jupyter Notebooks
[[Category:Software]][[Category:Python]][[Category:Machine Learning]] __NOTOC__

18 KB (2,983 words) - 18:58, 23 March 2023
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
SPM
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}

3 KB (327 words) - 17:00, 13 February 2024
Talesf
[[Category:Software]][[Category:Phylogenetics]]

2 KB (256 words) - 21:29, 6 December 2019
ViennaRNA
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (396 words) - 19:08, 10 June 2022
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
Gffcompare
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 16:48, 27 May 2022
SQLite
[[Category:Software]][[Category:Database]]

3 KB (339 words) - 13:32, 13 June 2022
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
CONN
[[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne

3 KB (293 words) - 20:32, 24 August 2022
DERIVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:51, 14 May 2021
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
DNA Clust
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (252 words) - 18:50, 12 August 2022
ForeSeqs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 21:21, 6 December 2019
Bayenv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 19:03, 10 June 2022
MPFR
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (302 words) - 21:22, 6 December 2019
Openmc
[[Category:Software]]

2 KB (287 words) - 20:25, 21 February 2024
Category:Climate
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:34, 24 August 2022
Popoolation
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 21:23, 6 December 2019
Genome Graph Annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 22:08, 27 August 2020
Duchamp
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:08, 6 June 2022
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012

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