Search results

Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
Datamash
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}

2 KB (247 words) - 15:01, 10 June 2022
Bloomfiltertrie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:18, 6 December 2019
ProtExcluder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (329 words) - 21:22, 6 December 2019
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
CAFE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software for Computational Analysis of gene Family Evolution

3 KB (318 words) - 21:06, 6 December 2019
Macrel
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 17:45, 10 May 2024
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
ReFrame
[[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]

2 KB (240 words) - 21:40, 21 August 2022
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
Illumiprocessor
[[Category:Software]][[Category:Phylogenetics]]

4 KB (452 words) - 18:44, 15 August 2022
Metaphlan
[[Category:Software]][[Category: Phylogenetics]]

2 KB (258 words) - 15:21, 26 August 2022
SeqKit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 21:24, 6 December 2019
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
Smalt
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] The software employs a hash index of short words of up to 20 nucleotides

3 KB (342 words) - 17:24, 3 June 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
Bubbleparse
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (246 words) - 14:43, 10 June 2022
DCMTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]][[Category:Neuroscience]] ...+. It comes in complete source code and is made available as "open source" software.

3 KB (304 words) - 20:31, 10 June 2022
Annocript
[[Category:Software]][[Category:Phylogenetics]] ...ormation about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by usi

3 KB (387 words) - 21:18, 6 December 2019
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
Pyani
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 19:44, 21 August 2022
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
DDocent
[[Category:Software]][[Category:Phylogenetics]]

2 KB (311 words) - 14:29, 15 August 2022
SHRiMP
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril

2 KB (269 words) - 22:55, 21 August 2022
BALi-Phy
[[Category:Software]][[Category:Phylogenetics]] '''BAli-phy''' is MCMC software developed by Ben Redelings with Marc Suchard for simultaneous Bayesian esti

3 KB (402 words) - 17:19, 14 December 2022
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
PolyPHen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PolyPhen-2 (Polymorphism Phenotyping v2) is a software tool which predicts possible impact of amino acid substitutions on the stru

3 KB (295 words) - 18:45, 27 May 2022
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
Minced
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (263 words) - 15:38, 10 June 2022
KaKs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

2 KB (281 words) - 19:18, 15 August 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
Ampligraph
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 14:44, 10 July 2023
Assembly-stats
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (293 words) - 14:56, 12 August 2022
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
IRFinder
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

2 KB (244 words) - 14:59, 10 June 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
DEXTRACTOR
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (441 words) - 19:20, 10 June 2022
PAPI
[[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} 

3 KB (360 words) - 16:36, 21 August 2022
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
TraCeR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:40, 22 August 2022
Z1Plus
[[Category:Software]]

2 KB (293 words) - 19:36, 6 September 2023
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
Stata
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|1}} 

4 KB (621 words) - 15:23, 5 January 2023
Talon
[[Category:Software]]

3 KB (321 words) - 15:13, 23 September 2022
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
RSEG
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (308 words) - 21:58, 21 August 2022
Intervene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (295 words) - 21:21, 6 December 2019
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
MetaLAFFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 13:52, 23 September 2021
LAMP
[[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po

2 KB (245 words) - 19:29, 12 August 2022
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Bwa-meth
[[Category:Software]]

2 KB (239 words) - 16:59, 24 August 2023
VASP
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

4 KB (550 words) - 19:00, 21 July 2023
MIRA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (313 words) - 20:42, 18 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
Category:Variant Calling
[[Category:Software]][[Category:Biology]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
Category:Revision Control
[[Category:Software]][[Category:CLI]]

3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
DL POLY
[[Category:Software]][[Category:Molecular Dynamics]] DL_POLY is a general purpose classical molecular dynamics (MD) simulation software developed at Daresbury Laboratory by I.T. Todorov and W. Smith.

2 KB (309 words) - 17:00, 6 June 2022
STAR-CCM+
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 16:01, 22 August 2022
LMAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (330 words) - 20:03, 15 August 2022
Category:Assembly
[[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.

20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Toil
[[Category:Software]][[Category:biology]]

2 KB (258 words) - 20:47, 12 August 2022
Category:Chemistry
[[Category:Software]]

34 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Spidey
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (295 words) - 20:44, 12 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
Nanocaller
[[Category:Software]]

3 KB (351 words) - 15:41, 16 March 2023
CLHEP
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 14:10, 13 June 2022
Dcmstack
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (272 words) - 14:29, 15 August 2022
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
Uropa
[[Category:Software]]

3 KB (337 words) - 15:42, 6 September 2022
Sharing Within A Cluster
...in their storage trees. This is the most appropriate way to share data and software among group members.

4 KB (682 words) - 15:25, 13 July 2023
Micop
[[Category:Software]][[Category:Genomics]]

2 KB (269 words) - 16:40, 27 September 2022
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
IDBA-MT
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ased on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig leng

3 KB (315 words) - 21:21, 6 December 2019
Coevol
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (399 words) - 18:37, 12 August 2022
BayesAss
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 21:13, 6 December 2019
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
Blitz
[[Category:Software]][[Category:Library]]

3 KB (303 words) - 21:19, 6 December 2019
Sickle
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (551 words) - 22:56, 21 August 2022
TensorFlow
[[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a

6 KB (790 words) - 15:25, 14 December 2022
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
Canu
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (358 words) - 14:26, 14 April 2020
Bsmap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Biology]] BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated C

3 KB (304 words) - 18:22, 12 August 2022
FastANI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (380 words) - 21:21, 6 December 2019
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
UFCG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (431 words) - 17:41, 20 September 2023
Flex
[[Category:Software]][[Category:Programming]]

2 KB (266 words) - 19:54, 3 June 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
PlantTribes
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 13:29, 4 October 2021
REPdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (327 words) - 21:43, 21 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
Category:Scheduler
[[Category:Categories]][[Category:Software]]

18 members (1 subcategory, 0 files) - 15:28, 23 August 2022
Phyluce
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultr

4 KB (517 words) - 18:23, 21 August 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
GEOS
[[Category:Software]][[Category:Library]][[Category:Data Science]]

3 KB (307 words) - 17:05, 15 August 2022
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
Flexbar
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

2 KB (285 words) - 16:45, 15 August 2022
CIRCexplorer
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (308 words) - 18:29, 12 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
Memory: Shared vs Distributed
...he processors can access other processor's memory only through network. In software sense, it means each processor only can see local machine memory directly a

2 KB (346 words) - 19:44, 16 January 2023
MPACK
[[Category:Software]][[Category:Library]]

3 KB (307 words) - 17:03, 10 June 2022
CellRanger-ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] ...ardefine:url|https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/overview/welcome}}

3 KB (288 words) - 18:24, 12 August 2022
Template:App Add Page
buttonlabel=Create new software {{{1|page}}}

177 bytes (20 words) - 15:38, 7 October 2011
HDF4
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:exe|}} 

2 KB (314 words) - 18:16, 15 August 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020
ProtHint
[[Category:Software]]

3 KB (329 words) - 20:27, 12 August 2022
Ngmlr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 16:24, 10 June 2022
MORPHEUS
[[Category:Software]][[Category:Machine Learning]]

3 KB (337 words) - 19:01, 14 March 2023
Unicycler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:29, 6 December 2019
Vt
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (273 words) - 16:13, 10 June 2022
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
Bowtie
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (443 words) - 13:06, 15 August 2022
ClustalO
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (292 words) - 18:36, 12 August 2022
FDSTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:34, 27 August 2020
BMGE
[[Category:Software]] ...teur.fr/en/publication/bmge-block-mapping-and-gathering-with-entropy-a-new-software-for-selection-of-phylogenetic-informative-regions-from-multiple-sequence-al

3 KB (407 words) - 13:04, 15 August 2022
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
Category:Python
[[Category:Software]]

3 members (0 subcategories, 0 files) - 21:56, 1 February 2014
MstatX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (288 words) - 21:22, 6 December 2019
Falco
[[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.

2 KB (283 words) - 14:11, 21 October 2022
HUMAnN
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (327 words) - 14:26, 11 October 2022
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
CD-HIT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (354 words) - 18:24, 12 August 2022
Hyb
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (247 words) - 15:07, 10 June 2022
IsoSeq3
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (295 words) - 20:10, 24 August 2022
Cactus
[[Category:Software]][[Category:Genomics]]

3 KB (298 words) - 21:30, 18 March 2024
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
DAKOTA
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

4 KB (484 words) - 18:26, 14 December 2022
HAPLOSWEEP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 21:20, 6 December 2019
Ont fast5 api
[[Category:Software]][[Category:Phylogenetics]] Oxford Nanopore Technologies fast5 API software

2 KB (238 words) - 17:49, 19 August 2022
SWIG
[[Category:Software]][[Category:library]][[Category:Programming]][[Category:Compiler]] ...ort its parse tree in the form of XML and Lisp s-expressions. SWIG is free software and the code that SWIG generates is compatible with both commercial and non

3 KB (414 words) - 20:04, 21 August 2022
R libraries
[[Category:Software]]

265 bytes (30 words) - 13:59, 30 June 2017
PICRUSt
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 18:28, 10 June 2022
Nuke
[[Category:Software]]

2 KB (277 words) - 13:47, 19 July 2023
Haploflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (287 words) - 20:31, 3 January 2022
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
MRIcron
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (329 words) - 20:33, 24 August 2022
Paralyzer
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/PARalyzer_85/}}

3 KB (352 words) - 18:19, 27 May 2022
Cammiq
[[Category:Software]][[Category:Biology]][[Category:Genomics]] CAMMiQ is a software tool for microbial identification and quantification.

2 KB (281 words) - 21:39, 14 June 2023
Redis
[[Category:Software]][[Category:Data Science]][[Category:Database]]

2 KB (267 words) - 21:39, 21 August 2022
HyPhy
[[Category:Software]][[Category:Biology]][[Category:Genomics]] HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogene

3 KB (380 words) - 18:36, 15 August 2022
RStudio
[[Category:Software]][[Category:Statistics]]

3 KB (461 words) - 19:51, 18 July 2023
Badread
[[Category:Software]][[Category:Phylogenetics]] ...RR. Badread: simulation of error-prone long reads. Journal of Open Source Software. 2019;4(36):1316. doi:10.21105/joss.01316.]

3 KB (363 words) - 20:47, 24 September 2020
Bmtagger
[[Category:Software]][[Category:Genomics‏‎]][[Category:Biology]]

2 KB (251 words) - 13:05, 15 August 2022
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
Swarm
[[Category:Software]][[Category:Data Science]]

2 KB (296 words) - 16:49, 21 August 2022
Ubuntu
[[Category:Software]][[Category:Linux]] Ubuntu is an open source software operating system that runs from the desktop, to the cloud, to all your inte

3 KB (321 words) - 19:57, 14 February 2024
EggNOG-mapper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 19:29, 6 December 2021
CGAL
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (293 words) - 15:32, 6 June 2022
ProSplign
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 17:08, 1 June 2022
SCRIPTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://software.broadinstitute.org/software/scripture/}}

3 KB (302 words) - 20:36, 12 August 2022
Hmmer2go
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (280 words) - 18:18, 15 August 2022
CLIPSeqTools
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (303 words) - 20:30, 10 June 2022
CNV-Sim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 17:28, 10 June 2022
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Wgd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 19:52, 27 May 2022
Phylonet
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzing and reconstructing reticulate evolutionary histories,

2 KB (263 words) - 21:23, 6 December 2019
PennCNV
[[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.

4 KB (474 words) - 21:23, 6 December 2019
Ima2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software#IMa2}}

2 KB (265 words) - 18:45, 15 August 2022
Hardware Accelerated GUI Sessions
[[Category:Software]] ==Launching Hardware (HW) Accelerated GUI software==

342 bytes (45 words) - 13:18, 12 April 2023
RNAFramework
[[Category:Software]]

2 KB (238 words) - 21:57, 21 August 2022
Trinity
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA- |{{#vardefine:exe|1}} 

4 KB (556 words) - 17:10, 22 August 2022
Slow5tools
[[Category:Software]]

2 KB (259 words) - 17:49, 21 July 2022
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
Whiteboxtools
[[Category:Software]][[Category:Phylogenetics]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

3 KB (408 words) - 17:43, 22 August 2022
HOMER
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (330 words) - 18:19, 15 August 2022
NetCDF-C
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (278 words) - 14:47, 19 August 2022
MTG2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
JAGS
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 17:12, 10 June 2022
UCX
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]]

2 KB (244 words) - 12:02, 26 August 2022
R-index
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:24, 6 December 2019
EIGENSOFT
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html}}

3 KB (295 words) - 14:58, 15 August 2022
ZEO++
[[Category:Software]][[Category:Chemistry]] Zeo++ is a open source software for performing high-throughput geometry-based analysis of porous materials

3 KB (424 words) - 19:47, 27 May 2022
Fit-sne
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:34, 27 May 2022
Rclone
[[Category:Software]][[Category:Web]]

6 KB (763 words) - 20:07, 30 October 2023
DeepPicker
[[Category:Software]][[Category:Imaging]] This software is installed in a container.

2 KB (281 words) - 14:34, 15 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
GFam
[[Category:Software]]

3 KB (339 words) - 17:06, 15 August 2022
Valgrind
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (275 words) - 21:31, 6 December 2019
MCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (372 words) - 18:28, 18 August 2022
Quickmerge
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 21:24, 6 December 2019
CUBE
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] |{{#vardefine:url|http://www.scalasca.org/software/cube-4.x}}

3 KB (329 words) - 14:14, 15 August 2022
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
Category:Programming
[[Category:Software]]

77 members (0 subcategories, 0 files) - 21:45, 24 October 2022
ADMIXTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|https://www.genetics.ucla.edu/software/admixture/index.html}}

3 KB (366 words) - 20:51, 11 August 2022
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
Snakemake
[[Category:Software]][[Category:Workflow Automation]][[Category:Biology]] ...inition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

3 KB (385 words) - 18:51, 15 August 2022
BayArea
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 15:02, 10 June 2022
Wannier90
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (268 words) - 21:31, 6 December 2019
Panaroo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (289 words) - 19:33, 13 June 2023
Category:Language
[[Category:Software]]

22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
VAMPIR
[[Category:Software]][[Category:Performance Analysis]]

3 KB (321 words) - 17:22, 22 August 2022
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
BBMap
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

3 KB (349 words) - 17:55, 10 June 2022
TrimAl
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Alignment‏]]

2 KB (264 words) - 19:32, 24 August 2022
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
YAGO
[[Category:Software]]

4 KB (480 words) - 17:13, 15 December 2022
StringMLST
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (292 words) - 20:45, 12 August 2022
Bamstats
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (251 words) - 18:01, 12 August 2022
Coot
[[Category:Software]][[Category:Modeling]]

3 KB (300 words) - 21:17, 6 December 2019
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
Slurm-drmaa
[[Category:Software]][[Category:library]][[Category:Scheduler Apps]][[Category:Programming]] ..., portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.

3 KB (316 words) - 14:30, 11 July 2023
Category:Library
[[Category:Software]] Libraries available for use by other software and for development.

87 members (0 subcategories, 0 files) - 04:37, 29 June 2012
PASTA
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (381 words) - 19:31, 24 August 2022
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
CryoSPARC
[[Category:Software]] CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug d

3 KB (383 words) - 18:05, 10 May 2024
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
Firefox
[[Category:Software]][[Category:Linux]]

3 KB (318 words) - 16:28, 19 October 2022
Platanus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 21:23, 6 December 2019
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
Protobuf
[[Category:Software]][[Category:web]][[Category:library]]

2 KB (280 words) - 18:02, 15 August 2022
Amphora2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

3 KB (333 words) - 17:35, 10 June 2022
BESST
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 12:51, 15 August 2022
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Dragmap
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]][[Category:Biology]] Dragmap is the Dragen mapper/aligner Open Source Software.

2 KB (249 words) - 14:47, 15 August 2022
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
Blast2GO CLI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (282 words) - 20:19, 24 August 2022
Saffrontree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (400 words) - 17:17, 31 May 2022
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
Epoch
[[Category:Software]][[Category:Astronomy]]

2 KB (250 words) - 13:13, 6 June 2022
Category:Applications
#REDIRECT [[Category:Software]]

0 members (0 subcategories, 0 files) - 17:26, 3 June 2022
Draft:Software Installation Policies and Guidelines
==Availabile Linux Software installed in ResVault==

2 KB (262 words) - 18:47, 20 February 2023
Ranger
[[Category:Software]][[Category:File Management]]

2 KB (284 words) - 13:54, 21 October 2022
Bsoft
[[Category:Software]][[Category:Biology]][[Category:Image Processing]] Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in struc

2 KB (297 words) - 13:14, 15 August 2022
BEDOPS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (317 words) - 12:48, 15 August 2022
MITObim
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 15:20, 22 April 2020
PRSice
[[Category:Software]][[Category:Phylogenetics]] PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic

2 KB (287 words) - 14:26, 1 February 2021
PacBio
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:Workflow Automation]] |{{#vardefine:url|https://www.pacb.com/products-and-services/analytical-software/devnet/}}

2 KB (250 words) - 20:10, 24 August 2022
CellRanger-DNA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}

2 KB (263 words) - 13:25, 15 August 2022

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