Search results

XWAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (383 words) - 13:27, 31 August 2020
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
Necklace
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ovo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resultin

3 KB (312 words) - 21:22, 6 December 2019
Processing
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Visualization]] ...within the context of the visual arts. Since 2001, Processing has promoted software literacy within the visual arts and visual literacy within technology. Ther

2 KB (285 words) - 12:12, 26 August 2022
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
Chewiesnake
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (457 words) - 15:02, 23 October 2023
SpliceGrapher
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (318 words) - 21:24, 6 December 2019
MCarts
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (399 words) - 14:53, 14 December 2022
GraphSplitting
[[Category:Software]][[Category:Phylogenetics]] gs2 is a software to conduct a brand-new phylogenetic analysis method--the Graph Splitting (G

2 KB (270 words) - 17:28, 4 June 2021
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
Metilene
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|https://www.bioinf.uni-leipzig.de/Software/metilene/}}

3 KB (375 words) - 19:39, 18 August 2022
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
AfterQC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (341 words) - 21:19, 6 December 2019
Storage
...ng data files in any analyses run on HiPerGator. It is permissible to keep software builds, conda environments, text documents, and valuable scripts in $HOME a

12 KB (2,046 words) - 15:26, 13 July 2023
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
Genesis
[[Category:Software]] ...ftware under the LGPLv3. Earlier versions (<=1.4) were distributed as free software under the GPLv2 license.

3 KB (368 words) - 17:51, 3 April 2024
Pycoqc
[[Category:Software]] ...ive quality control for Oxford Nanopore Sequencing. Journal of Open Source Software, 4(34), 1236, https://doi.org/10.21105/joss.01236

3 KB (309 words) - 13:55, 21 October 2022
Ncview
[[Category:Software]][[Category:Visualization]] |{{#vardefine:exe|}} 

2 KB (317 words) - 14:42, 19 August 2022
SpaceRanger
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 18:57, 20 October 2021
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
Pysamstats
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 19:52, 29 September 2020
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
Ufraw
[[Category:Software]][[Category:Data Mining]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (316 words) - 14:45, 6 June 2022
Qupath
[[Category:Software]][[Category:Biology]][[Category:Imaging]] Bankhead, P. et al. QuPath: Open source software for digital pathology image analysis. Scientific Reports (2017).

2 KB (290 words) - 17:50, 11 April 2023
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
CNV-Seq
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 13:50, 15 August 2022
MELTING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the

3 KB (306 words) - 19:50, 12 August 2022
MetaMaps
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 19:25, 14 December 2021
Giotto
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 19:31, 26 May 2022
PhyloTF2
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Alignment]]

3 KB (320 words) - 18:22, 21 August 2022
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
ABRicate
[[Category:Software]][[Category:Phylogenetics]] If you publish the results of Abricate please cite both the software and the appropriate database you used with --db

3 KB (314 words) - 17:27, 27 April 2020
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
NucleoATAC
[[Category:Software]][[Category:biology]]

2 KB (276 words) - 20:08, 12 August 2022
NGmerge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:22, 6 December 2019
SOAPsplice
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (315 words) - 00:06, 22 August 2022
Bakta
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (308 words) - 15:28, 12 August 2022
PLEK
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:57, 10 June 2022
Mfold
[[Category:Software]][[Category:Biology]][[Category:Structure]]

2 KB (277 words) - 19:51, 12 August 2022
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
QTLtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 20:58, 21 August 2022
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
NANO
[[Category:Software]][[Category:Programming]]

3 KB (360 words) - 19:24, 29 November 2022
ART
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.niehs.nih.gov/research/resources/software/biostatistics/art/}}

3 KB (440 words) - 21:10, 6 December 2019
Xapian
[[Category:Software]][[Category:Library]]

2 KB (265 words) - 15:42, 10 June 2022
Kmerdb
[[Category:Software]][[Category:genomics]][[Category:Biology]]

2 KB (277 words) - 13:30, 15 August 2022
XZ
[[Category:Software]][[Category:compression]][[Category:library]] XZ Utils is free general-purpose data compression software with a high compression ratio. XZ Utils were written for POSIX-like systems

2 KB (287 words) - 14:19, 27 May 2022
Scapp
[[Category:Software]][[Category:Genomics]][[Category:Assembly]]

2 KB (267 words) - 20:57, 10 August 2023
Scallop
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 14:44, 26 January 2021
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
Concaterpillar
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 22:10, 26 August 2020
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
MountainSort
[[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent

3 KB (309 words) - 21:22, 6 December 2019
Spruceup
[[Category:Software]][[Category:Phylogenetics]] ...quence blocks (alignment columns) commonly addressed by alignment trimming software.

3 KB (317 words) - 21:24, 6 December 2019
SEPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (313 words) - 20:39, 12 August 2022
Jbrowse2
[[Category:Software]][[Category:Web]]

2 KB (246 words) - 17:50, 15 August 2022
VDJtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:29, 6 December 2019
TPP
[[Category:Software]][[Category:Biology]][[Category:Chemistry]][[Category:spectroscopy]]

2 KB (266 words) - 20:22, 24 August 2022
Pplacer
[[Category:Software]]

2 KB (282 words) - 15:45, 19 August 2022
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
GDSL
[[Category:Software]][[Category:Library]]

3 KB (305 words) - 15:37, 6 June 2022
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
HALC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:20, 6 December 2019
ScGPT
[[Category:Software]]

2 KB (258 words) - 16:01, 7 August 2023
Face recognition
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 14:56, 3 June 2022
D2go
[[Category:Software]][[Category:Machine Learning]] D2Go is a production ready software system from FacebookResearch, which supports end-to-end model training and

2 KB (251 words) - 14:23, 15 August 2022
USEARCH
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

4 KB (559 words) - 17:19, 22 August 2022
CONCOCT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues: [https://github.com/

3 KB (308 words) - 18:39, 12 August 2022
GCE
[[Category:Software]]

3 KB (311 words) - 18:57, 12 August 2022
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
Weka
[[Category:Software]][[Category:Machine Learning]][[Category:Statistics]] Weka is tried and tested open source machine learning software that can be accessed through a graphical user interface, standard terminal

3 KB (304 words) - 16:07, 6 June 2022
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
Dammit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ..., the existing solutions are overly complicated or rely on crappy non-free software.

2 KB (279 words) - 21:20, 6 December 2019
Checkv
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (278 words) - 13:58, 18 October 2022
OTB
[[Category:Software]][[Category:Geospatial]]

3 KB (311 words) - 17:27, 10 June 2022
Slivar
[[Category:Software]][[Category:Biology]]

2 KB (295 words) - 19:28, 10 December 2023
SHARCGS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:De Novo]]

3 KB (313 words) - 22:42, 21 August 2022
Seqtk
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (263 words) - 20:40, 12 August 2022
HiC-Pro
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Genomics]]

3 KB (432 words) - 18:17, 15 August 2022
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
Mriqc
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (296 words) - 20:33, 24 August 2022
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
MiRanda
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 21:21, 6 December 2019
Alevin-fry
[[Category:Software]]

3 KB (320 words) - 18:28, 9 February 2023
SU2
[[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.

2 KB (278 words) - 18:50, 1 June 2022
Generative AI
This page describes the collection of Generative AI software on HiperGator. Generative AI is a subset of artificial intelligence that fo *'''OpenCV''': An open-source computer vision and machine learning software library containing more than 2,500 optimized algorithms for real-time compu

7 KB (922 words) - 16:56, 14 May 2024
CAVIAR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 21:17, 6 December 2019
Minimap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (385 words) - 19:07, 10 June 2022
Graphtyper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (373 words) - 15:43, 17 November 2021
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
PhyloFlash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 00:09, 29 October 2020
Modules Basic Usage
...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...spective branches. E.g., if you need to load the module for the "espresso" software that was built with MVAPICH2 support using Intel Compiler version 11.1 you

5 KB (745 words) - 16:07, 13 February 2023
Software Development Policies
==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r

533 bytes (84 words) - 15:43, 19 August 2022
Odgi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:11, 15 July 2021
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
EnTAP
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (236 words) - 21:20, 6 December 2019
Distruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:20, 6 December 2019
Circexplorer3
[[Category:Software]]

2 KB (271 words) - 15:06, 18 January 2023
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
Gawk
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/gawk/}}

3 KB (356 words) - 16:55, 15 August 2022
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
QTL-seq
[[Category:Software]]

3 KB (410 words) - 19:05, 31 January 2022
Category:Imaging
[[Category:Software]]

46 members (0 subcategories, 0 files) - 21:45, 24 October 2022
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
Subphaser
[[Category:Software]]

2 KB (275 words) - 20:42, 28 April 2023
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
Glog
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (269 words) - 17:10, 15 August 2022
CRISP
[[Category:Software]][[Category:Phylogenetics]] CRISP is a software program to detect SNPs and short indels from pooled sequencing data. CRISP

3 KB (342 words) - 21:01, 6 December 2019
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
ExpansionHunterDenovo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (266 words) - 20:35, 8 March 2022
PRANK
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (271 words) - 20:25, 12 August 2022
DNA Clust
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (252 words) - 18:50, 12 August 2022
CHARMM
[[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 13:51, 6 June 2022
HASLR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 19:53, 17 August 2020
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
Intel MPI
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]] |{{#vardefine:url|https://software.intel.com/en-us/intel-mpi-library}}

3 KB (297 words) - 12:01, 26 August 2022
Shasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (402 words) - 21:24, 6 December 2019
Bridger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (341 words) - 13:14, 15 August 2022
Staphb-toolkit
[[Category:Software]][[Category:Biology]]

2 KB (248 words) - 19:54, 2 June 2022
W2rap-contigger
[[Category:Software]][[Category:biology]][[Category:genomics]]

2 KB (246 words) - 21:29, 6 December 2019
Galaxy Upgrade Highlights
[[Category:Software]][[Category:Galaxy]]

3 KB (417 words) - 20:34, 18 April 2018
AI Help
== AI Software == A comprehensive software stack for AI research is available on HiPerGator for both CPU and GPU accel

6 KB (870 words) - 17:17, 22 April 2024
SEQuel
[[Category:Software]][[Category:NGS]][[Category:Biology]]

3 KB (382 words) - 22:39, 21 August 2022
ZUMIS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (302 words) - 17:55, 22 August 2022
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
MIGRATE-N
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:exe|1}} 

5 KB (636 words) - 16:05, 22 December 2022
Ctk
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (297 words) - 16:53, 10 October 2022
Mach2VCF
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 14:49, 10 June 2022
Managing GDrive Access
{{ note|"project-367116221053" is the name that the developer of the "gdrive" software () provided to Google when registering the application for review and accep

3 KB (444 words) - 14:06, 16 March 2023
Category:Performance Analysis
[[Category:Software]]

10 members (0 subcategories, 0 files) - 19:52, 22 August 2022
FastTree
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (388 words) - 16:39, 15 August 2022
Jupyter Notebooks
[[Category:Software]][[Category:Python]][[Category:Machine Learning]] __NOTOC__

18 KB (2,983 words) - 18:58, 23 March 2023
SomaticSeq
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 00:06, 22 August 2022
HELEN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 22:22, 27 August 2020
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
PyPHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:24, 6 December 2019
GDrive
[[Category:Software]]

3 KB (400 words) - 20:03, 5 October 2023
Category:Data Mining
[[Category:Data]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:25, 23 August 2022
Ggsashimi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 16:38, 27 May 2022
Texlive
[[Category:Software]][[Category:Documentation]]

2 KB (267 words) - 16:34, 22 August 2022
GATE
[[Category:Software]][[Category:Library]]

2 KB (264 words) - 19:51, 10 June 2022
Srst2
[[Category:Software]]

2 KB (278 words) - 17:42, 13 December 2022
Tbprofiler
[[Category:Software]]

3 KB (312 words) - 21:31, 10 February 2023
Mathematica
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 22:21, 8 September 2020
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
MetaPhlAn2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (319 words) - 19:28, 2 June 2022
SRA-Human-Scrubber
[[Category:Software]]

3 KB (411 words) - 14:01, 27 May 2022
DeSALT
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

3 KB (350 words) - 14:38, 15 August 2022
Quarto
[[Category:Software]]

3 KB (327 words) - 14:09, 27 February 2024
SInC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (278 words) - 21:24, 6 December 2019
EEGLAB
[[Category:Software]][[Category:Biology]][[Category:Biology]]

2 KB (271 words) - 14:56, 15 August 2022
MAGeCK-VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 20:21, 26 May 2022
Pbmm2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 20:08, 31 May 2022
AtomMan
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 14:16, 22 September 2020
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
NucDiff
[[Category:Software]][[Category:Phylogenetics]] ...ral.com/articles/10.1186/gb-2004-5-2-r12 Kurtz S et al. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. doi 10.1186/gb-200

3 KB (315 words) - 21:22, 6 December 2019
Ancestryhmm
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (291 words) - 21:25, 9 May 2023
QGIS
[[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (288 words) - 20:27, 24 August 2022
BYOBU
[[Category:Software]][[Category:Shell]]

3 KB (313 words) - 19:50, 11 July 2022
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
LazyPredict
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 14:02, 6 December 2021
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Hail
[[Category:Software]]

3 KB (353 words) - 17:42, 19 October 2021
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
Evigene
[[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl

3 KB (372 words) - 21:21, 6 December 2019
Open OnDemand
[[Category:Software]][[Category:GUI]]

7 KB (1,059 words) - 16:46, 5 May 2023
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
PDA
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/pda/}}

3 KB (294 words) - 21:23, 6 December 2019
CWLtool
[[Category:Software]][[Category:Workflow Automation]][[Category:Scheduler Apps]]

3 KB (326 words) - 18:29, 11 November 2022
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
SNPsplit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (282 words) - 20:38, 27 May 2022
Rnalysis
[[Category:Software]] RNAlysis is a Python-based software for analyzing RNA sequencing data. RNAlysis allows you to build customized

5 KB (648 words) - 16:12, 25 April 2023
Mauve
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (448 words) - 19:49, 12 August 2022
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
DSuite
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (244 words) - 17:17, 2 June 2022
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
NCBI C++ Toolkit
[[Category:Software]][[Category:Biology]][[Category:programming]][[Category:library]][[Category

3 KB (306 words) - 14:25, 19 August 2022
NOVOPlasty
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:23, 6 December 2019
FALCON
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (395 words) - 15:19, 15 August 2022
DeepMReye
[[Category:Software]][[Category:biology]][[Category:Library]]

3 KB (316 words) - 18:49, 12 August 2022
Category:Mapping
[[Category:Software]]

8 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Fluent
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (266 words) - 16:46, 15 August 2022
NextPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:55, 30 November 2020
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
BRM
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:54, 26 August 2020
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
LTRRetriever
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (255 words) - 21:21, 6 December 2019
Saige
[[Category:Software]][[Category:Genomics]]

3 KB (297 words) - 19:29, 20 January 2023
GDAL
[[Category:Software]][[Category:Geospatial]][[Category:Library]]

3 KB (313 words) - 18:21, 8 July 2022
Pod5
[[Category:Software]]

2 KB (292 words) - 17:31, 1 July 2022
Cogent
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:06, 6 December 2019
FcGENE
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]][[Category:Genomics]]

3 KB (326 words) - 16:38, 15 August 2022
MAGMA-GWAS
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ctg.cncr.nl/software/magma}}

2 KB (273 words) - 19:35, 23 February 2021
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
Epiteome
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 15:06, 15 August 2022
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
Albacore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (258 words) - 21:10, 6 December 2019
Laneta
[[Category:Software]]

2 KB (253 words) - 19:29, 12 August 2022
ASTRID
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 15:16, 12 August 2022
BoxCLI
[[Category:Software]][[Category:File Management]][[Category:Web]][[Category:Programming]]

2 KB (253 words) - 13:52, 21 October 2022
Numba
[[Category:Software]][[Category:Compiler]]

3 KB (353 words) - 20:44, 15 August 2022
Sailfish
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]][[Category:RNA-Se |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/sailfish/}}

4 KB (482 words) - 22:02, 21 August 2022
Roguenarok
[[Category:Software]]

2 KB (226 words) - 16:07, 18 April 2023
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
BEAST2-XML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 14:20, 2 September 2020
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
Vray
[[Category:Software]] |{{#vardefine:url|https://www.chaos.com/3d-rendering-software}}

3 KB (341 words) - 16:46, 6 April 2023
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
SQL Developer
[[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.

3 KB (323 words) - 17:32, 15 August 2022
Meson
[[Category:Software]][[Category:Programming]]

2 KB (237 words) - 15:56, 24 October 2023
Gcnenv
[[Category:Software]][[Category:Math]]

2 KB (243 words) - 19:38, 20 June 2023
Yolov4 darknet
[[Category:Software]][[Category:Machine Learning]]

2 KB (244 words) - 19:21, 1 June 2022
AAFTF
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]

2 KB (245 words) - 20:45, 11 August 2022
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
ARKS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:15, 6 December 2019
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
Plasme
[[Category:Software]]

3 KB (375 words) - 18:08, 3 April 2024
Unrar
[[Category:Software]][[Category:utility]]

2 KB (239 words) - 19:16, 3 June 2022
PBJelly
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (309 words) - 17:07, 21 August 2022
PICSL
[[Category:Software]] This package contains a software implementation for joint label fusion and

3 KB (390 words) - 20:31, 24 August 2022
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
GROCSVs
[[Category:Software]][[Category:Phylogenetics]] Genome-wide Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequen

2 KB (274 words) - 21:21, 6 December 2019
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
ProbABEL
[[Category:Software]][[Category:Genomics]][[Category:Biology]] ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quanti

3 KB (371 words) - 19:35, 21 August 2022
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
FIGARO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 16:27, 15 December 2021
ESOM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (242 words) - 15:08, 15 August 2022
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
Inspector
[[Category:Software]][[Category:biology]][[Category:Genomics]]

3 KB (319 words) - 18:50, 15 August 2022
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
Modulus
[[Category:Software]]

3 KB (338 words) - 17:43, 29 August 2022
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
NONMEM
[[Category:Software]][[Category:Modeling]]

3 KB (439 words) - 21:23, 6 December 2019
CIRI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 21:11, 6 December 2019
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
Pytorch
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (257 words) - 15:56, 6 June 2022
GenGen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The

3 KB (326 words) - 17:36, 10 June 2022
Hecaton
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (277 words) - 18:57, 6 June 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
CodonPhyML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 13:25, 23 July 2020
GARLI
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:exe|1}} 

3 KB (485 words) - 16:53, 15 August 2022
MicrobeAnnotator
[[Category:Software]][[Category:Annotation]][[Category:Biology]]

2 KB (270 words) - 19:02, 10 October 2022
VirtualCell
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:29, 6 December 2019

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