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• Matlab GUI Example
  ...dependency scheduling or incorporating GUI MATLAB tasks into larger launch scripts. In these cases you can use an advanced job script to start a MATLAB GUI s
  3 KB (375 words) - 21:32, 24 October 2022
• Example SLURM-GPU-Job-Scripts
  42 bytes (6 words) - 22:02, 8 February 2017
• SLURM Scripts
  #REDIRECT [[Amber Job Sample Scripts]]
  38 bytes (5 words) - 17:37, 26 June 2017
• SMC++ Job Scripts
  1 KB (175 words) - 14:19, 25 March 2022
• Sniffles2 Job Scripts
  1 KB (150 words) - 15:09, 12 April 2022
• RNAFramework Job Scripts
  2 KB (255 words) - 16:33, 14 April 2022
• PGAP Job Scripts
  1 KB (140 words) - 14:30, 6 July 2022
• Blast Job Scripts
  2 KB (358 words) - 20:27, 3 June 2022
• MOOSE Job Scripts
  1 KB (132 words) - 15:22, 9 February 2023
• ORCA Job Scripts
  1 KB (174 words) - 22:50, 31 March 2024
• Vasp Job Scripts
  2 KB (191 words) - 17:45, 2 April 2024
• Hgraph2graph Job Scripts
  2 KB (274 words) - 17:09, 14 June 2022
• Sample SLURM Scripts
  .../, and can be copied from there. If you choose to copy one of these sample scripts, please make sure you understand what each <code>#SBATCH</code> directive m ...or communication between jobs, view [[Multi-Threaded & Message Passing Job Scripts]]
  11 KB (1,685 words) - 20:52, 13 May 2024
• ParaView Job Scripts
  834 bytes (102 words) - 16:25, 16 February 2022
• Example SLURM-Parallel-Job-Scripts
  42 bytes (6 words) - 22:00, 8 February 2017
• IMPUTE5 Job Scripts
  2 KB (202 words) - 20:14, 2 February 2022
• Cactus Job Scripts
  2 KB (236 words) - 15:11, 28 February 2022
• Amber Job Sample Scripts
  1 KB (171 words) - 21:18, 5 December 2022
• AutoDock-GPU Job Scripts
  1 KB (175 words) - 21:16, 6 April 2022
• Structure threader Job Scripts
  1 KB (163 words) - 12:34, 2 May 2022
• RMATS-turbo Job Scripts
  2 KB (212 words) - 18:16, 8 March 2022
• SRA-Human-Scrubber Job Scripts
  1 KB (161 words) - 14:04, 27 May 2022
• Multi-Threaded & Message Passing Job Scripts
  Back to [[Sample SLURM Scripts]] __NOTOC__
  9 KB (1,347 words) - 19:05, 21 July 2023

Page text matches

• Pyhdf
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (267 words) - 15:25, 3 June 2022
• BlobTools
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (267 words) - 21:15, 6 December 2019
• Circlator
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (272 words) - 13:34, 15 August 2022
• Camino
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (291 words) - 18:22, 12 August 2022
• SpliceTrap
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (347 words) - 20:44, 12 August 2022
• Lima
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (299 words) - 19:57, 15 August 2022
• GULP
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (311 words) - 18:09, 15 August 2022
• GTDBTk
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (299 words) - 15:08, 12 April 2022
• Nextstrain
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (295 words) - 14:56, 2 March 2020
• CellRanger
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (294 words) - 18:24, 12 August 2022
• Primus
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (266 words) - 21:22, 6 December 2019
• Blast2GO CLI
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (282 words) - 20:19, 24 August 2022
• Phenix
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (325 words) - 18:12, 21 August 2022
• PRSice
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (287 words) - 14:26, 1 February 2021
• RELION
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (434 words) - 21:42, 21 August 2022
• Pomoxis
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (285 words) - 18:48, 21 August 2022
• GHOST-MP
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (285 words) - 20:11, 7 May 2020
• Crass
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (300 words) - 14:02, 15 August 2022
• Pbtranscript-tofu
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> The scripts in this repository are now compatible with SMRTAnalysis 2.3. It is a "beta"
  3 KB (324 words) - 20:11, 24 August 2022
• GLPK
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (272 words) - 17:11, 15 August 2022
• ExpansionHunterDenovo
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (266 words) - 20:35, 8 March 2022
• GenomicTools
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (385 words) - 18:58, 12 August 2022
• Scrappie
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (416 words) - 13:43, 7 April 2021
• Ansysem
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (240 words) - 16:11, 23 March 2023
• GEMMA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (279 words) - 21:21, 6 December 2019
• Merqury
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (306 words) - 13:54, 12 August 2020
• Regtools
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (254 words) - 21:41, 21 August 2022
• GMP
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (373 words) - 13:43, 3 June 2022
• GraphMap2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (240 words) - 19:06, 21 July 2022
• Momi
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (305 words) - 19:03, 4 April 2022
• MIA
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (347 words) - 19:52, 12 August 2022
• NPhase
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (275 words) - 17:53, 15 August 2022
• MAGeCKFlute
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (252 words) - 20:24, 15 August 2022
• Gephi
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (337 words) - 17:42, 11 January 2023
• CDNA Cupcake
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...analyzing sequencing data. Most of the scripts only require Biopython. For scripts that require additional libraries, it will be specified in documentation.
  2 KB (276 words) - 13:24, 15 August 2022
• ALLMAPS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (361 words) - 21:11, 6 December 2019
• MASSMINE
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (562 words) - 15:42, 14 December 2022
• Xapian
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (265 words) - 15:42, 10 June 2022
• Bactopia
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (292 words) - 21:38, 10 January 2023
• Spacemake
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (249 words) - 22:12, 22 September 2022
• Kalign
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (265 words) - 19:28, 12 August 2022
• HOOMD
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> ...how you want to execute the job and it takes care of the rest. Python job scripts give you unlimited flexibility to create custom initialization routines, co
  5 KB (607 words) - 15:40, 6 June 2022
• Mapdamage
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (299 words) - 21:28, 16 September 2022
• GRACKLE
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (294 words) - 17:18, 15 August 2022
• Vasp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (538 words) - 22:38, 31 March 2024
• ProtExcluder
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (329 words) - 21:22, 6 December 2019
• Metaxa2
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (300 words) - 19:29, 18 August 2022
• Mrtrix3tissue
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (255 words) - 16:51, 30 January 2023
• ImageMagick
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (380 words) - 18:46, 15 August 2022
• LazyPredict
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (259 words) - 14:02, 6 December 2021
• PHI
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (326 words) - 18:25, 13 July 2022
• Nubeamdedup
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (282 words) - 17:23, 19 August 2022
• Macaulay2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (246 words) - 20:23, 15 August 2022
• Smalt
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (342 words) - 17:24, 3 June 2022
• SeqKit
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (388 words) - 21:24, 6 December 2019
• Auto3DEM
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (433 words) - 15:24, 12 August 2022
• Hificnv
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (292 words) - 20:23, 20 March 2024
• ASPECT
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (285 words) - 15:16, 3 June 2022
• QTL-seq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (410 words) - 19:05, 31 January 2022
• Python-core
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (318 words) - 20:04, 21 August 2022
• Nccl
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (293 words) - 20:03, 21 August 2022
• SourceTracker2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (357 words) - 14:19, 14 September 2020
• QIIME
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> See the single-threaded and multi-threaded examples on the [[Sample SLURM Scripts]] page for more details.
  4 KB (555 words) - 15:15, 19 August 2022
• AlphaMate
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (338 words) - 13:46, 9 May 2023
• PyVista
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (344 words) - 13:56, 25 September 2020
• Conpair
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (325 words) - 17:29, 10 June 2022
• NucDiff
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (315 words) - 21:22, 6 December 2019
• Brewery
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (245 words) - 17:40, 24 January 2020
• Mitohifi
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (312 words) - 17:01, 21 July 2022
• Captus
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (321 words) - 16:36, 16 November 2022
• CIMS
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (315 words) - 17:21, 10 June 2022
• ECE
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> Wrapper shell scripts for the following applications are available, so they can be called directl
  3 KB (360 words) - 21:39, 3 March 2023
• Nonpareil
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 15:48, 17 November 2020
• Freesurfer
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (323 words) - 20:09, 12 August 2022
• LoFreq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (244 words) - 21:21, 6 December 2019
• SOAPnuke
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (264 words) - 14:12, 6 April 2020
• ORCA
  |{{#vardefine:job|1}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (399 words) - 14:03, 2 April 2024
• Fdupes
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (241 words) - 13:53, 21 October 2022
• Tracula
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (342 words) - 20:51, 12 August 2022
• SNPsplit
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (282 words) - 20:38, 27 May 2022
• RMATS turbo
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (289 words) - 19:26, 2 June 2022
• DSRC
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (252 words) - 14:27, 17 February 2021
• PALADIN
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (361 words) - 18:31, 10 June 2022
• CIRCexplorer2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (286 words) - 21:03, 6 December 2019
• Graph-tool
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (285 words) - 17:20, 15 August 2022
• PyVCF
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (236 words) - 20:08, 21 August 2022
• Parsnp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (297 words) - 21:22, 6 December 2019
• Multi-Threaded & Message Passing Job Scripts
  Back to [[Sample SLURM Scripts]] __NOTOC__
  9 KB (1,347 words) - 19:05, 21 July 2023
• DeepMReye
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (316 words) - 18:49, 12 August 2022
• EIGENSOFT
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (295 words) - 14:58, 15 August 2022
• LoRDEC
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (258 words) - 13:38, 22 April 2021
• TriMetAss
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (344 words) - 20:52, 12 August 2022
• Talesf
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (256 words) - 21:29, 6 December 2019
• BDG-SeQuila
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (323 words) - 21:41, 26 August 2020
• IsPcr
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (251 words) - 21:22, 6 December 2019
• Ibdne
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (308 words) - 17:05, 27 May 2022
• Probalign
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (349 words) - 19:36, 21 August 2022
• Sniffles2
  |{{#vardefine:job|1}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (291 words) - 20:42, 12 August 2022
• QD
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (271 words) - 17:47, 15 August 2022
• Trycycler
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (305 words) - 18:13, 22 July 2021
• PyCogent
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (275 words) - 17:20, 1 June 2022
• ForeSeqs
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (257 words) - 21:21, 6 December 2019
• FDSTools
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (251 words) - 21:34, 27 August 2020
• LASTZ
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (284 words) - 19:30, 12 August 2022
• MODELLER
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (364 words) - 19:53, 12 August 2022
• Gubbins
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (335 words) - 17:28, 15 August 2022
• CellRanger-ARC
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (288 words) - 18:24, 12 August 2022
• Maxima
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (298 words) - 21:21, 6 December 2019
• PICSL
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (390 words) - 20:31, 24 August 2022
• EMBOSS
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (372 words) - 15:01, 15 August 2022
• Autodock-vina
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (343 words) - 19:31, 9 November 2022
• MEGASAT
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (278 words) - 13:22, 28 August 2020
• Toil
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (258 words) - 20:47, 12 August 2022
• LMAP
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (330 words) - 20:03, 15 August 2022
• IGB
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (257 words) - 18:41, 15 August 2022
• Ovito
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> Automation scripts
  3 KB (333 words) - 15:29, 1 December 2023
• EQTLA
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (269 words) - 18:52, 12 August 2022
• FIGARO
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (281 words) - 16:27, 15 December 2021
• OMindel
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (238 words) - 19:51, 31 May 2022
• Sampledock
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (253 words) - 17:59, 15 August 2022
• MetaPhysicl
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (247 words) - 19:28, 18 August 2022
• Uropa
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (337 words) - 15:42, 6 September 2022
• Dcmstack
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (272 words) - 14:29, 15 August 2022
• QualiMap
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (326 words) - 19:32, 24 August 2022
• SCRON (Slurm Cron Jobs)
  You can view your existing scripts (if any) in scrontab with: ...ives for regular Slurm batch jobs. Slurm will ignore #SBATCH directives in scripts you run as scrontab jobs. You can use most of the common sbatch options jus
  5 KB (839 words) - 18:34, 17 April 2024
• VarDictJava
  |{{#vardefine:batch|}} <!--SLURM SCRIPTS--> <!--SLURM scripts-->
  3 KB (334 words) - 17:23, 22 August 2022
• ClustalW
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (265 words) - 18:37, 12 August 2022
• Bamaddrg
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (302 words) - 20:19, 19 October 2020
• ADMB
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (302 words) - 20:49, 11 August 2022
• GROCSVs
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (274 words) - 21:21, 6 December 2019
• YAK
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (293 words) - 16:10, 10 March 2021
• PhyloPhlAn2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...ely configured through a set of input parameters and a configuration file (scripts are provided to generate different configuration files to perform different
  3 KB (375 words) - 17:57, 9 June 2022
• VirusFinder
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (410 words) - 21:29, 6 December 2019
• AMPtk
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also be used
  2 KB (289 words) - 12:41, 12 August 2022
• Dorado
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (335 words) - 16:04, 22 February 2024
• QAPA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (305 words) - 16:54, 15 January 2021
• Python
  and modifies PYTHONPATH and PYTHONHOME, so you could use them in your scripts.
  5 KB (670 words) - 19:42, 3 February 2023
• Medusa
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (265 words) - 21:21, 6 December 2019
• ABRicate
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (314 words) - 17:27, 27 April 2020
• IGV
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (276 words) - 18:42, 15 August 2022
• NCBI GenBank Tools
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (291 words) - 14:33, 19 August 2022
• OpenPose
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (497 words) - 18:44, 30 January 2023
• Pytorch
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (257 words) - 15:56, 6 June 2022
• MAJIQ
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (247 words) - 14:59, 10 June 2022
• NewTargets
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (379 words) - 20:06, 12 August 2022
• RepeatModeler
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (297 words) - 20:32, 12 August 2022
• FGMP
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (326 words) - 21:20, 6 December 2019
• FastQTL
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (325 words) - 14:40, 22 July 2020
• GenotypeHarmonizer
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (286 words) - 19:01, 12 August 2022
• GeneMarkS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (296 words) - 16:45, 27 May 2022
• Nipype
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (348 words) - 20:07, 12 August 2022
• Allhic
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (299 words) - 12:35, 12 August 2022
• PyBSASeq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (235 words) - 17:14, 1 June 2022
• Kmerfreq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (449 words) - 19:28, 12 August 2022
• Satsuma2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (243 words) - 18:10, 1 June 2022
• NanoVar
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (294 words) - 21:23, 6 December 2019
• Cobra-tf
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (293 words) - 13:51, 15 August 2022
• Model Card Toolkit
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (333 words) - 15:31, 10 July 2023
• Ksnp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (327 words) - 12:56, 15 August 2022
• FALCON
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (395 words) - 15:19, 15 August 2022
• Stylegan3
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (298 words) - 16:09, 22 August 2022
• Mothur
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> ...Many of these tools are available elsewhere as individual programs and as scripts, which tend to be slow or as web utilities, which limit your ability to ana
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• NLP
  ...and [[AI_Reference_Datasets]] for helpful resources. Notebooks and batch scripts cover everything from pretraining and inferencing to summarization, informa
  8 KB (1,126 words) - 19:55, 14 May 2024
• Iaps
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (250 words) - 18:42, 8 February 2023
• Iupred2a
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (271 words) - 16:25, 12 October 2023
• FMRIPrep
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (288 words) - 16:47, 17 October 2023
• Vcf-validator
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (249 words) - 17:27, 22 August 2022
• MstatX
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (288 words) - 21:22, 6 December 2019
• Fairseq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (296 words) - 15:18, 15 August 2022
• Fit-sne
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (287 words) - 16:34, 27 May 2022
• CoMap
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (378 words) - 18:39, 12 August 2022
• Panseq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (293 words) - 16:12, 17 November 2021
• GRASS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  5 KB (593 words) - 21:27, 14 December 2022
• Botorch
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (288 words) - 18:11, 22 September 2022
• LAPACK
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (286 words) - 17:43, 15 August 2022
• SWIG
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (414 words) - 20:04, 21 August 2022
• HAPLOSWEEP
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (260 words) - 21:20, 6 December 2019
• RSeQC
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (328 words) - 17:48, 10 June 2022
• Geomxngspipeline
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (332 words) - 17:51, 29 January 2024
• FLASh
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (297 words) - 16:44, 15 August 2022
• Inspector
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (319 words) - 18:50, 15 August 2022
• GenomicConsensus
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (256 words) - 15:05, 10 June 2022
• Rapidsai
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (348 words) - 21:29, 21 August 2022
• Mpinterfaces
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (279 words) - 12:27, 19 August 2022
• Repeatscout
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (288 words) - 21:24, 6 December 2019
• AfterQC
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (341 words) - 21:19, 6 December 2019
• Pyani
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (283 words) - 19:44, 21 August 2022
• MiRanda
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (278 words) - 21:21, 6 December 2019
• DosageConvertor
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (252 words) - 15:04, 10 June 2022
• ImageJ
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (268 words) - 20:03, 10 June 2022
• Development and Testing
  ...or process. These limits should allow for the testing of job submission scripts or even simple application development tests. If you need to run multiple i ...l salloc] to create a SLURM allocation under which you can run commands or scripts with ''srun'' for as long as the allocation is valid. Whatever you ''srun''
  5 KB (842 words) - 17:26, 8 March 2023
• PBCCS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (245 words) - 17:07, 21 August 2022
• BayesR
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (253 words) - 15:01, 10 June 2022
• DeTiN
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (249 words) - 14:39, 15 August 2022
• Circexplorer3
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (271 words) - 15:06, 18 January 2023
• Randfold
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (262 words) - 21:29, 21 August 2022
• Ea-utils
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  4 KB (438 words) - 14:54, 15 August 2022
• EMMAX
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (304 words) - 15:06, 15 August 2022
• Smartie-sv
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (247 words) - 18:30, 1 June 2022
• Vamb
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (302 words) - 18:59, 1 February 2021
• SST-Core
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (324 words) - 21:24, 6 December 2019
• AdapterRemoval
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (357 words) - 20:47, 11 August 2022
• Running MOOSE
  ./scripts/update_and_rebuild_libmesh.sh --enable-vtk-required --with-vtk-lib=${HPC_VT ...building the module you are interested in and then exit and run both test scripts. Don’t forget that you may need to reload the moose module on the login n
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• ArrayFire
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (315 words) - 14:52, 12 August 2022
• Pbcore
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (244 words) - 20:16, 12 August 2022
• Automlsa2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (266 words) - 15:25, 12 August 2022
• ExpansionHunter
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (335 words) - 20:36, 8 March 2022
• MASS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 19:02, 10 October 2022
• Yolov5
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (289 words) - 23:52, 31 January 2023
• VSearch
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (381 words) - 19:01, 10 June 2022
• OrganellePBA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (258 words) - 21:22, 6 December 2019
• MOOSE Configuration
  ...etting up MOOSE make sure there are no environment changes caused by those scripts. # Run "./scripts/update_and_rebuild_libmesh.sh --enable-vtk-required --with-vtk-lib=${HPC_VT
  1 KB (189 words) - 15:20, 5 May 2023
• TREEPUZZLE
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (450 words) - 19:31, 10 June 2022
• GROMACS
  |{{#vardefine:job|1}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (556 words) - 19:16, 5 January 2023
• SIPeS
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (327 words) - 20:41, 12 August 2022
• Pychopper
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (262 words) - 18:12, 27 July 2022
• GSNP
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (459 words) - 17:27, 15 August 2022
• DERIVA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 13:51, 14 May 2021
• MinkowskiEngine
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (256 words) - 17:52, 31 May 2022
• RaGOO
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (280 words) - 21:24, 6 December 2019
• CutRunTools
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (266 words) - 22:20, 26 August 2020
• RAPSearch
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (304 words) - 21:24, 6 December 2019
• WhatsHap
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 21:29, 6 December 2019
• ANGSD
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (355 words) - 12:42, 12 August 2022
• Graphaligner
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (262 words) - 21:48, 12 January 2023
• Olego
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (309 words) - 17:44, 19 August 2022
• Duchamp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (317 words) - 13:08, 6 June 2022
• AMAS
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (250 words) - 12:38, 12 August 2022
• PROJ
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (240 words) - 20:26, 24 August 2022
• Graftm
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (322 words) - 22:16, 27 August 2020
• CAFE
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (318 words) - 21:06, 6 December 2019
• Panaroo
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (289 words) - 19:33, 13 June 2023
• IQ-TREE
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (395 words) - 14:51, 14 December 2022
• CuOpt
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (281 words) - 19:20, 27 January 2023
• SVDetect
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (303 words) - 20:46, 12 August 2022
• SE-MEI
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> This repository contains a number of scripts and programs useful for finding mobile element insertion (MEI) sites from s
  2 KB (276 words) - 22:30, 21 August 2022
• MetaLAFFA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (305 words) - 13:52, 23 September 2021
• Torch-geometric
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (241 words) - 19:43, 1 June 2022
• Mamba
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (429 words) - 20:16, 3 June 2022
• Slurm-drmaa
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (316 words) - 14:30, 11 July 2023
• Coot
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (300 words) - 21:17, 6 December 2019
• Poretools
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (240 words) - 18:50, 21 August 2022
• Fanc
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (281 words) - 15:56, 22 March 2024
• MKL
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (378 words) - 19:14, 24 August 2022
• Portcullis
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (343 words) - 19:18, 31 January 2022
• CMake
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (326 words) - 13:49, 15 August 2022
• Alevin-fry
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (320 words) - 18:28, 9 February 2023
• Aria2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (326 words) - 14:05, 17 September 2020
• Java
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (448 words) - 19:10, 15 August 2022
• Ancestryhmm
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
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