Search results

Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
Albumentations
[[Category:Software]][[Category:Machine Learning]][[Category:Imaging]][[Category:Image Processi

2 KB (263 words) - 12:33, 12 August 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Elastix
[[Category:Software]][[Category:Phylogenetics]] ...on the well-known Insight Segmentation and Registration Toolkit (ITK). The software consists of a collection of algorithms that are commonly used to solve (med

3 KB (365 words) - 15:30, 3 June 2022
FastqPuri
[[Category:Software]][[Category:Phylogenetics]] Software and source code of FastqPuri. It creates quality reports of fastq files and

2 KB (272 words) - 15:29, 19 January 2021
QIIME
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

4 KB (555 words) - 15:15, 19 August 2022
Asap
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

3 KB (295 words) - 17:29, 9 June 2022
PanX
[[Category:Software]][[Category:Phylogenetics]] panX is a software package for pan-genome analysis, interactive visualization and exploration.

3 KB (346 words) - 21:22, 6 December 2019
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
OpenBabel
[[Category:Software]][[Category:Biology]]

2 KB (283 words) - 17:51, 19 August 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
Goatools
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 03:26, 2 January 2023
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
Graph-tool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 17:20, 15 August 2022
NewTargets
[[Category:Software]]

3 KB (379 words) - 20:06, 12 August 2022
QOS Limits
CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s

4 KB (598 words) - 03:35, 26 February 2023
Gblocks
[[Category:Software]][[Category:Biology]]

3 KB (441 words) - 13:56, 13 June 2022
SQANTI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 21:24, 6 December 2019
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
Ngmlr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 16:24, 10 June 2022
Csubst
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (380 words) - 22:12, 26 July 2023
Chromeister
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 19:42, 23 May 2022
Biolite
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]]

3 KB (362 words) - 12:54, 15 August 2022
Blackfynn
[[Category:Software]][[Category:Data Mining]]

2 KB (280 words) - 19:12, 27 May 2022
Smudgeplot
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 15:19, 4 May 2021
PhyML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (465 words) - 20:22, 12 August 2022
BRATNextGen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BRAT-NextGen/}}

2 KB (268 words) - 13:10, 15 August 2022
SUMO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:24, 6 December 2019
Bsoft
[[Category:Software]][[Category:Biology]][[Category:Image Processing]] Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in struc

2 KB (297 words) - 13:14, 15 August 2022
SeqyClean
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (312 words) - 22:41, 21 August 2022
Fast-Plast
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (487 words) - 21:20, 6 December 2019
Ydata-profiling
[[Category:Software]][[Category:Machine Learning]][[Category:Artificial Intelligence]]

2 KB (280 words) - 19:05, 1 December 2023
Spark
[[Category:Software]][[Category:Utility]]

11 KB (1,573 words) - 22:01, 15 December 2022
ELPA
[[Category:Software]][[Category:Math]][[Category:Library]][[Category:Compiler]]

2 KB (290 words) - 14:58, 15 August 2022
Atom
[[Category:Software]][[Category:Programming]]

2 KB (273 words) - 15:21, 12 August 2022
MetaCluster
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (321 words) - 19:26, 18 August 2022
PHYLIP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:42, 10 June 2022
Caper
[[Category:Software]][[Category:Data_Science]]

3 KB (425 words) - 14:43, 11 October 2023
Category:Compression
[[Category:Software]]

5 members (0 subcategories, 0 files) - 17:21, 3 June 2022
EQTLA
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (269 words) - 18:52, 12 August 2022
SUPPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 21:24, 6 December 2019
Healthcare and Life Sciences
...e potential to revolutionize human health and medical research by enabling software to learn from past examples and make informed decisions in life sciences. R ...ct protein structures with remarkable accuracy, down to atomic levels. The software constructs an initial model, iteratively refines it, and produces a 3D mode

4 KB (521 words) - 16:00, 14 May 2024
R8s
[[Category:Software]][[Category:phylogenetics]]

3 KB (456 words) - 21:24, 6 December 2019
SimNIBS
[[Category:Software]][[Category:Phylogenetics]] SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation. It allows for

3 KB (324 words) - 18:04, 28 August 2020
Jasmine
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 19:09, 15 August 2022
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
PHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (232 words) - 18:13, 21 August 2022
LIBXSMM
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (257 words) - 17:46, 15 August 2022
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
Hapsembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (332 words) - 18:15, 15 August 2022
Gscripts
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 17:25, 15 August 2022
Workbench
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (286 words) - 15:34, 19 August 2022
ABruijn
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (354 words) - 20:09, 24 August 2022
GEM
[[Category:Software]] [[Category:Biology]] [[Category:NGS]][[Category:Sequencing]]

2 KB (254 words) - 17:00, 15 August 2022
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
ToFU2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] software. The isoform sequencing (Iso-Seq) application generates full-length

3 KB (398 words) - 16:38, 22 August 2022
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
MRIcroGL
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (294 words) - 20:33, 24 August 2022
ClinicaDL
[[Category:Software]][[Category:Biology]][[Category:imaging]][[Category:Machine Learning]] ...data with deep learning methods. ClinicaDL install includes the 'clinica' software platform for clinical research studies involving patients with neurological

3 KB (323 words) - 13:41, 15 August 2022
NEURON
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

2 KB (249 words) - 14:58, 10 June 2022
Nccl
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:GPU]]

3 KB (293 words) - 20:03, 21 August 2022
OMindel
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:51, 31 May 2022
Seqmule
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (342 words) - 19:06, 15 September 2022
Tcllib
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.tcl.tk/software/tcllib/}}

2 KB (273 words) - 16:12, 10 June 2022
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
Cyvcf2
[[Category:Software]]

2 KB (260 words) - 14:47, 28 July 2023
RMATS-turbo
[[Category:Software]]

2 KB (292 words) - 18:14, 8 March 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
LobSTR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (259 words) - 15:19, 10 June 2022
YAK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:10, 10 March 2021
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
HapCompass
[[Category:Software]][[Category:Genomics]][[Category:NGS]]

2 KB (287 words) - 18:13, 15 August 2022
SeSiMCMC
[[Category:Software]][[Category:Sequencing]]

3 KB (299 words) - 22:41, 21 August 2022
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
Consulting
* Get priority help with software, hardware, coding, or architecture

2 KB (378 words) - 18:33, 13 June 2023
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
QuartetScores
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 14:50, 27 April 2020
UShER
[[Category:Software]][[Category:Phylogenetics]]

3 KB (425 words) - 21:08, 13 January 2022
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
SIPeS
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

3 KB (327 words) - 20:41, 12 August 2022
RDnaTools
[[Category:Software]][[Category:Phylogenetics]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (361 words) - 21:24, 6 December 2019
GenomeTools
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 18:58, 12 August 2022
JAGS
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 17:12, 10 June 2022
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
LRBinner
[[Category:Software]]

5 KB (527 words) - 14:45, 14 December 2022
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
FastQTL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 14:40, 22 July 2020
Scrappie
[[Category:Software]]

3 KB (416 words) - 13:43, 7 April 2021
Gaussian License
[[Category:Software]] * I am not a member of a research group developing software competitive to Gaussian.

1 KB (185 words) - 14:26, 30 June 2017
Mobsuite
[[Category:Software]] Software tools for clustering, reconstruction and typing of plasmids from draft asse

3 KB (340 words) - 20:03, 10 October 2022
MitoFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:23, 6 December 2019
Subread
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Variant Calling]]

3 KB (315 words) - 12:57, 15 August 2022
MACH
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] haplotypes thereof as proxies. MACH software implements a computationally

3 KB (363 words) - 20:23, 15 August 2022
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
GFF3toolkit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (335 words) - 20:48, 23 May 2022
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
COMSOL
[[Category:Software]][[Category:Simulation]] COMSOL Multiphysics® is a general-purpose simulation software for modeling designs, devices, and processes in all fields of engineering,

3 KB (426 words) - 19:40, 20 February 2024
NPhase
[[Category:Software]]

2 KB (275 words) - 17:53, 15 August 2022
PRINSEQ
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (271 words) - 15:52, 10 June 2022
Ensembl Tools
[[Category:Software]][[Category:Biology]][[Category:Biology]]

3 KB (333 words) - 18:52, 12 August 2022
ASHS
[[Category:Software]][[Category:Biology]][[Category:imaging]] ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. A

3 KB (353 words) - 20:32, 24 August 2022
BinPacker
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...ur data and could explain all observed splicing events of each locus. This software is free to use, modify, redistribute without any restrictions, except inclu

3 KB (365 words) - 12:53, 15 August 2022
GASVPro
[[Category:Software]][[Category:Biology]][[Category:NGS]] GASV (Geometric Analysis of Structural Variants) is software for identifying and structural variants (SVs) from paired-end sequencing da

2 KB (248 words) - 18:57, 12 August 2022
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
Openmc
[[Category:Software]]

2 KB (287 words) - 20:25, 21 February 2024
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
GCT
[[Category:Software]][[Category:File Management]][[Category:Utility]] The GCT is a nascent effort to provide community-based support for critical software packages for grid computing. The GCT is based on a fork of the Globus Toolk

2 KB (290 words) - 13:54, 21 October 2022
Kalign
[[Category:Software]]

2 KB (265 words) - 19:28, 12 August 2022
Appreci8
[[Category:Software]]

4 KB (561 words) - 14:25, 12 August 2022
LDhat
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:09, 10 June 2022
Fusion twas
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:27, 26 May 2022
SALSA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (269 words) - 20:11, 24 August 2022
GCC
[[Category:Software]][[Category: Compiler]]

2 KB (251 words) - 16:55, 15 August 2022
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
Wub
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Tools and software library developed by the ONT Applications group

2 KB (250 words) - 17:46, 22 August 2022
FASTRAL-constrained
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:25, 15 August 2022
Octave
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/octave/}}

2 KB (333 words) - 15:22, 19 August 2022
IMa2p
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 21:21, 6 December 2019
Mantis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (368 words) - 17:20, 27 May 2022
TaxonKit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:01, 13 December 2021
Category:Structure
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
NetCDF-F
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (269 words) - 16:36, 2 September 2022
Category:Phylogenetics
[[Category:Biology]][[Category:Software]][[Category:Research]] Phylogenetics software and documentation

766 members (0 subcategories, 0 files) - 21:43, 24 October 2022
Doxygen
[[Category:Software]][[Category:Programming]][[Category:Documentation]] This module enables the use of the Doxygen software

3 KB (406 words) - 14:47, 15 August 2022
Tigmint
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 21:29, 6 December 2019
Desmond
[[Category:Software]][[Category:Biology]]

2 KB (256 words) - 20:07, 6 April 2023
NCBI GenBank Tools
[[Category:Software]][[Category:Biology]][[Category:Healthcare]]

2 KB (291 words) - 14:33, 19 August 2022
AnnoTALE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:15, 17 September 2020
Freyja
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]][[Category:Biology]]

2 KB (289 words) - 16:49, 15 August 2022
RNAstructure
[[Category:Software]]

3 KB (359 words) - 21:58, 21 August 2022
AlphaMate
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphamate/}}

3 KB (338 words) - 13:46, 9 May 2023
LongQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 14:52, 12 October 2021
ASTRAL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

3 KB (415 words) - 15:08, 12 August 2022
MixMHCpred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:34, 31 May 2022
NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
Apptainer
[[Category:Software]][[Category:Workflow Automation]] or even create a shell in the software environment provided by the container with

4 KB (609 words) - 16:30, 12 February 2024
Pyroms
[[Category:Software]][[Category:Geospatial]]

2 KB (287 words) - 20:27, 24 August 2022
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
InParanoid
[[Category:Software]][[Category:Biology]]

2 KB (236 words) - 19:20, 12 August 2022
Nextstrain
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 14:56, 2 March 2020
CONNECT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 14:53, 24 November 2020
FastQC
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (382 words) - 15:25, 15 August 2022
Parallel
[[Category:Software]][[Category:Shell]][[Category:Workflow Automation]] |{{#vardefine:url|http://www.gnu.org/software/parallel/}}

3 KB (334 words) - 16:46, 21 August 2022
4p
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] 4P (Parallel Processing of Polymorphism Panels) is a software for computing

2 KB (285 words) - 20:36, 11 August 2022
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
MGLTools
[[Category:Software]] These software tools are highly integrated and based on reusable software

3 KB (357 words) - 17:03, 6 June 2022
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
GHOST-MP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 20:11, 7 May 2020
Nimare
[[Category:Software]]

3 KB (343 words) - 15:27, 15 August 2022
Stacks
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. St

4 KB (658 words) - 21:20, 2 January 2023
Probalign
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (349 words) - 19:36, 21 August 2022
HMM-FRAME
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
MET
[[Category:Software]]

3 KB (365 words) - 20:04, 24 August 2022
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
Bamsnap
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 16:14, 27 May 2022
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
RagTag
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 15:27, 13 August 2020
LoRDEC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 13:38, 22 April 2021
MSMBuilder
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

2 KB (288 words) - 16:38, 10 June 2022
Python Modules
[[Category:Software]]

415 bytes (50 words) - 20:40, 5 April 2018
WoLFPSort
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 21:29, 6 December 2019
PyCharm
[[Category:Software]][[Category:Programming]]

2 KB (229 words) - 12:24, 26 August 2022
Category:Scheduler Apps
[[Category:Scheduler]][[Category:Software]]

3 members (0 subcategories, 0 files) - 18:29, 11 November 2022
Porechop
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:23, 6 December 2019
Aquamis
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 22:07, 20 October 2023
Tcoffee
[[Category:Software]][[Category:Biology]]

2 KB (280 words) - 20:46, 12 August 2022
DeFusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:22, 26 August 2020
Trycycler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 18:13, 22 July 2021
RMATS turbo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (289 words) - 19:26, 2 June 2022
Merlin
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (264 words) - 12:56, 15 August 2022
Moses
[[Category:Software]]

3 KB (381 words) - 15:15, 17 October 2022
GDC-Client
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (311 words) - 18:57, 12 August 2022
Samblaster
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (296 words) - 22:03, 21 August 2022
FEniCS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:20, 6 December 2019
Tesseract
[[Category:Software]]

2 KB (271 words) - 17:29, 3 April 2024
ROOTPy
[[Category:Software]][[Category:Data Science]]

3 KB (389 words) - 16:49, 21 August 2022
GSEA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...://www.pnas.org/content/102/43/15545.abstract To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subr

2 KB (298 words) - 17:27, 15 August 2022
Category:Software
Or you can browse through the sub-categories or software package names in the table below. To add a documentation page for a new piece of software installed into /apps please go to [[Add New App Page]].

2,146 members (62 subcategories, 0 files) - 19:53, 20 February 2024
QIIME2
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

3 KB (435 words) - 15:15, 19 August 2022
Category:Geospatial
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
SMR
[[Category:Software]] |{{#vardefine:url|https://cnsgenomics.com/software/smr/#Overview}}

3 KB (362 words) - 18:27, 19 August 2021
WU BLAST
[[Category:Software]][[Category:Biology]]

3 KB (356 words) - 17:44, 22 August 2022
STAR
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (291 words) - 16:01, 22 August 2022
Mlst
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:22, 6 December 2019
VirusFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] VirusFinder 2 is a new software tool for characterizing intra-host viruses through next generation sequenci

3 KB (410 words) - 21:29, 6 December 2019
Ea-utils
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

4 KB (438 words) - 14:54, 15 August 2022
Metilene
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|https://www.bioinf.uni-leipzig.de/Software/metilene/}}

3 KB (375 words) - 19:39, 18 August 2022
SCOP
[[Category:Software]]

2 KB (295 words) - 17:31, 15 August 2022
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
Storage
...ng data files in any analyses run on HiPerGator. It is permissible to keep software builds, conda environments, text documents, and valuable scripts in $HOME a

12 KB (2,046 words) - 15:26, 13 July 2023
Espresso SLURM
[[Category:Software]]

1 KB (144 words) - 21:20, 8 November 2022
Ncview
[[Category:Software]][[Category:Visualization]] |{{#vardefine:exe|}} 

2 KB (317 words) - 14:42, 19 August 2022
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
Pbtranscript-tofu
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (324 words) - 20:11, 24 August 2022
Pysamstats
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 19:52, 29 September 2020
Moni
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (341 words) - 13:31, 15 August 2022
ANDI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 14:11, 20 February 2023
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
Qupath
[[Category:Software]][[Category:Biology]][[Category:Imaging]] Bankhead, P. et al. QuPath: Open source software for digital pathology image analysis. Scientific Reports (2017).

2 KB (290 words) - 17:50, 11 April 2023
Reptile
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Math]] |{{#vardefine:exe|1}} 

3 KB (458 words) - 21:46, 21 August 2022
MELTING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the

3 KB (306 words) - 19:50, 12 August 2022
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
GMP
[[Category:Software]][[Category:Library]]

3 KB (373 words) - 13:43, 3 June 2022
Minimap2
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
Mykrobe
[[Category:Software]]

2 KB (246 words) - 16:37, 21 June 2023
SOAPnuke
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:12, 6 April 2020
Meta-Marc
[[Category:Software]][[Category:Phylogenetics]] ...is not intended to be used as a final annotation or all-in-one tool; this software simply offers the user another view of complex metagenomic data. Users are

3 KB (336 words) - 14:51, 20 January 2021
Java
[[Category:Software]][[Category:Programming]]

3 KB (448 words) - 19:10, 15 August 2022
Deepcoil
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (241 words) - 18:49, 12 August 2022
SMRT-SV
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (340 words) - 00:03, 22 August 2022
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
HOMER
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (330 words) - 18:19, 15 August 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
Category:GPU
[[Category:Software]]

11 members (1 subcategory, 0 files) - 18:36, 6 June 2022
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
MSMC-Tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 19:12, 9 June 2020
LIQA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 20:03, 15 August 2022
Grace
[[Category:Software]][[Category:Statistics]][[Category:Graphics]] |{{#vardefine:exe|1}} 

2 KB (256 words) - 17:17, 15 August 2022
Synima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (313 words) - 20:34, 27 May 2022
Seqwish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (347 words) - 21:24, 6 December 2019
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
SST-Core Install
[[SST-Core|Back to SST-Core page]][[Category:Software]]

1 KB (195 words) - 14:50, 16 August 2017
Redundans
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Cupy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 19:58, 23 May 2022
Jabba
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:21, 6 December 2019
Braker
[[Category:Software]][[Category:Phylogenetics]] https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker

2 KB (261 words) - 22:28, 26 August 2020
Kmerfreq
[[Category:Software]]

3 KB (449 words) - 19:28, 12 August 2022
DOT
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] DOT is a software package for docking macromolecules, including proteins, DNA, and RNA. DOT p

3 KB (340 words) - 14:46, 15 August 2022
BAPS
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}

3 KB (313 words) - 18:07, 12 August 2022
Autometa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (300 words) - 21:19, 6 December 2019
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
SparCC
[[Category:Software]][[Category:Biology]] |{{#vardefine:exe|}} 

2 KB (264 words) - 15:47, 22 August 2022
GenePainter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 21:20, 6 December 2019
Pcangsd
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (343 words) - 18:21, 8 December 2023
SNAP
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (372 words) - 20:42, 12 August 2022
Embree
[[Category:Software]][[Category:Graphics]]

3 KB (343 words) - 15:01, 15 August 2022
NLP
[[Category:Software]][[Category:Machine Learning]][[Category:Data Science]][[Category:Help]] This page describes the collection of Natural language processing software on HiperGator. Natural Language Processing (NLP) is a part of artificial in

8 KB (1,126 words) - 19:55, 14 May 2024
Minipolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (338 words) - 14:53, 9 December 2019
SNPhylo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (340 words) - 17:48, 10 June 2022
Vibrant
[[Category:Software]][[Category:Genomics]]

3 KB (333 words) - 17:36, 15 August 2022
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
Delft3D
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

3 KB (398 words) - 13:35, 17 April 2024
BWA-PSSM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 21:12, 6 December 2019
Data Science Platform
*'''[[TensorFlow]]:''' TensorFlow is an open-source software library widely used for implementing artificial neural networks and deep le *'''[[Rapidsai]]:''' RAPIDS AI is a suite of CUDA-enabled open-source software libraries and APIs by NVIDIA. It accelerates end-to-end data science pipeli

5 KB (663 words) - 19:52, 14 May 2024
QuorUM
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 21:24, 6 December 2019
XWAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (383 words) - 13:27, 31 August 2020
Physher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 15:28, 16 November 2021

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