Category:Software
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If you don't see the application you're looking for in the lists provided below or when running $ module spider "app_name"
on your terminal, please submit a request at suppor.rc.ufl.edu.
Click here to find the full list of installed applications that can be ran on HiPerGator.
Or you can browse through the sub-categories or software package names in the table below.
To see what modules were recently added or removed and why see Environment Module Add / Remove log for the last 30 days.
In addition, full historical log of module additions and removals is available.
Add New App
To add a documentation page for a new piece of software installed into /apps please go to Add New App Page.
Subcategories
This category has the following 62 subcategories, out of 62 total.
A
B
C
D
F
G
H
I
M
N
P
R
S
U
V
W
Pages in category "Software"
The following 200 pages are in this category, out of 2,140 total.
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- Relernn
- RELION
- RelocaTE2
- REMORA
- REPdenovo
- RepeatAnalysis
- RepeatAnalysisTools
- RepeatExplorer
- RepeatMasker
- RepeatModeler
- Repeatscout
- RepeatSeq
- Reptile
- ResFinder
- Resistify
- Resistome
- Resolve
- RevBayes
- RFAA
- RFMIX
- RGAugury
- RGI
- RGIS
- RHash
- RiboCode
- RiboPicker
- RiboTaper
- Ribotricer
- RIGERJ
- RMATS turbo
- RMATS-turbo
- Rmats2sashimiplot
- Rnabloom
- Rnaeditingindexer
- RNAFramework
- RNAhybrid
- Rnalysis
- RNAmmer
- RnaQUAST
- RNAsalsa
- Rnaseqlib
- RNAstructure
- Roary
- Roguenarok
- ROOT
- ROOTPy
- Rosetta
- RoseTTAFold
- Rrnaselector
- RSEG
- RSEM
- RSeQC
- RStudio
- RStudio Server
- RTGTools
- Ruby
- Run dbcan
- Rust
- Rvtests
S
- S.A.G.E
- Sabre
- Saffrontree
- Saige
- Sailfish
- Salmon
- SALSA
- Samapi
- Sambamba
- Samblaster
- Sampledock
- SAMStat
- Samtools
- SAS
- Sate
- Satsuma
- Satsuma2
- Sc-im
- Scala
- Scalablast
- ScaLAPACK
- Scallop
- Scalpel
- Scapp
- ScGPT
- Schrodinger Suite
- Sciann
- Scikit-learn
- Scipion
- SCIrun
- Scoary
- Scons
- SCOP
- Scrappie
- SCRATCH-1D
- Screen
- SCRIPTURE
- Scythe
- Sdsl
- SE-MEI
- SeCaPr
- Seekdeep
- Segemehl
- Segment-liftover
- SemiBin
- SEPP
- Seq crumbs
- Seq-Gen
- SeqKit
- Seqmagick
- SeqMap
- Seqmule
- SEQPower
- SeqPrep
- Seqscreen
- Seqtk
- SEQuel
- SequelQC
- Seqwish
- SeqyClean
- SeSiMCMC
- SExtractor
- SHAPE-MaP
- SHAPEIT
- SHAPEIT4
- ShapeMapper
- SHARCGS
- Shasta
- SHEsisPlus
- Shogun
- Shortbred
- Shovill
- SHRiMP
- Shustring
- SibeliaZ
- SICER
- Sickle
- Siesta
- SIFT
- SIGffRid
- SignalP
- SiLiX
- Silo
- Sim4
- Sim4Life
- Simka
- SimNIBS
- SimSeq
- Simulation and Modeling
- Simulia
- SInC
- Sine scan
- Singularity
- SIPeS
- Sisl
- Ska2
- Skmer
- Slamdunk
- SLAW
- Slicer
- Slivar
- Slow5tools
- Slurm
- Slurm-drmaa
- Smalt
- SMARTdenovo
- Smartie-sv
- SMC++
- Smetana
- SMR
- SMRT-SV
- SMS
- Smudgeplot
- Snakemake
- SNAP
- SNAPE-pooled
- SNeP
- Sniffles
- Sniffles2
- Snippy
- SNP-Pipeline
- SNP-sites
- Snp2hla
- SnpEff
- Snpflip
- SNPGenie
- SNPhylo
- SNPsplit
- SNPTEST
- SOAPaligner
- SOAPdenovo
- SOAPdenovo-Trans
- SOAPec
- SOAPnuke
- SOAPsplice
- SODA
- SOLAR
- SomaticSeq
- SortaDate
- SortMeRNA
- SourceTracker2