Rnabloom
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Description
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types:
- single-end/paired-end bulk RNA-seq (strand-specific/agnostic)
- paired-end single-cell RNA-seq (strand-specific/agnostic)
- long-read RNA-seq (ONT cDNA/direct RNA, PacBio cDNA)
Environment Modules
Run module spider RNA-Bloom to find out what environment modules are available for this application.
System Variables
- HPC_RNA-BLOOM_DIR - installation directory
- HPC_RNA-BLOOM_BIN - executable directory