Search results

UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
FIGARO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 16:27, 15 December 2021
ESOM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (242 words) - 15:08, 15 August 2022
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
Inspector
[[Category:Software]][[Category:biology]][[Category:Genomics]]

3 KB (319 words) - 18:50, 15 August 2022
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
Modulus
[[Category:Software]]

3 KB (338 words) - 17:43, 29 August 2022
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
NONMEM
[[Category:Software]][[Category:Modeling]]

3 KB (439 words) - 21:23, 6 December 2019
CIRI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 21:11, 6 December 2019
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
Pytorch
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (257 words) - 15:56, 6 June 2022
GenGen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The

3 KB (326 words) - 17:36, 10 June 2022
Hecaton
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (277 words) - 18:57, 6 June 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
CodonPhyML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 13:25, 23 July 2020
GARLI
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:exe|1}} 

3 KB (485 words) - 16:53, 15 August 2022
MicrobeAnnotator
[[Category:Software]][[Category:Annotation]][[Category:Biology]]

2 KB (270 words) - 19:02, 10 October 2022
VirtualCell
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:29, 6 December 2019
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
Allhic
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (299 words) - 12:35, 12 August 2022
Xterm
[[Category:Software]][[Category:Shell]]

2 KB (278 words) - 19:37, 11 July 2022
DDSCAT
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|}} 

2 KB (326 words) - 14:30, 15 August 2022
Viralmsa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 19:56, 27 May 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
CONN
[[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne

3 KB (293 words) - 20:32, 24 August 2022
Libvips
[[Category:Software]][[Category:Image Processing]]

2 KB (255 words) - 20:10, 26 May 2022
MEGA
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software suite for analyzing DNA and protein sequence data from species and populati

3 KB (337 words) - 20:30, 15 December 2020
SoX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
Pbipa
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBi

2 KB (268 words) - 21:58, 27 April 2022
MiXCR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire seq

3 KB (340 words) - 21:22, 6 December 2019
Globus
[[Category:Software]][[Category:File Management]] ...h [https://www.globus.org/globus-connect-personal Globus Connect Personal] software they can use to set up a personal collection on their computing device (Win

11 KB (1,849 words) - 14:14, 31 January 2024
Category:Data
[[Category:Software]]

12 members (5 subcategories, 0 files) - 20:50, 2 June 2022
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
Genome Graph Annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 22:08, 27 August 2020
GUI Programs
[[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.

2 KB (390 words) - 14:42, 30 January 2023
CLIFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:11, 6 December 2019
Miniprot
[[Category:Software]]

2 KB (246 words) - 19:48, 31 August 2023
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
Deepmicrobes
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Machine Learning]]

2 KB (240 words) - 14:33, 15 August 2022
Uproc
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (418 words) - 20:53, 12 August 2022
FLASh
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://ccb.jhu.edu/software/FLASH/}}

2 KB (297 words) - 16:44, 15 August 2022
V-pipe
[[Category:Software]]

3 KB (296 words) - 17:20, 22 August 2022
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
Vscode
[[Category:Software]][[Category:Programming]]

3 KB (405 words) - 14:15, 26 February 2024
HAPCUT
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (298 words) - 18:13, 15 August 2022
Filtlong
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (299 words) - 21:20, 6 December 2019
OpenMM
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (315 words) - 15:30, 19 August 2022
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
Jasper
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (354 words) - 16:42, 14 December 2023
Seq crumbs
[[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category ...th Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

3 KB (328 words) - 15:12, 27 May 2022
Proovread
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (269 words) - 20:27, 12 August 2022
The silver searcher
[[Category:Software]][[Category:Search]]

2 KB (248 words) - 14:33, 29 June 2021
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
Msprime
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 22:49, 8 September 2020
Newbler
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]][[Category:De Nov Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for

2 KB (305 words) - 16:17, 19 August 2022
Starseqr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 17:12, 31 May 2022
Nf-core
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (332 words) - 18:51, 15 August 2022
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
Simulation and Modeling
[[Category:Software]][[Category:Machine Learning]][[Category:GPU]]

1 KB (142 words) - 20:34, 9 May 2024
Breakseq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:15, 6 December 2019
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
Panseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:12, 17 November 2021
IDBA-UD
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (354 words) - 18:40, 15 August 2022
Sabre
[[Category:Software]][[Category:Phylogenetics]]

3 KB (356 words) - 16:32, 2 November 2020
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
GTDBTk
[[Category:Software]][[Category:Phylogenetics]] GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and

3 KB (299 words) - 15:08, 12 April 2022
ITSx
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}

2 KB (275 words) - 19:52, 10 February 2020
Sra-human-scrubber
[[Category:Software]][[Category:Genomics]]

3 KB (395 words) - 15:57, 22 August 2022
LoFreq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
MethylDackel
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 17:55, 6 March 2020
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
Pascal
[[Category:Software]][[Category:Compiler]][[Category:Programming]]

3 KB (303 words) - 20:44, 15 August 2022
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
Portcullis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 19:18, 31 January 2022
SPM
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}

3 KB (327 words) - 17:00, 13 February 2024
Category:Revision Control
[[Category:Software]][[Category:CLI]]

3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
IGoR
[[Category:Software]][[Category:Phylogenetics]] IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing dat

2 KB (271 words) - 13:52, 14 May 2020
TransVar
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (335 words) - 18:16, 2 May 2022
Ghostscript
[[Category:Software]][[Category:Documentation]]

2 KB (254 words) - 17:08, 15 August 2022
Survival Kit
[[Category:Software]][[Category:Healthcare]] The Survival Kit is primarily intended to fill a gap in the software available to animal breeders who generally tend to use extremely large data

2 KB (263 words) - 16:11, 22 August 2022
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
ExpansionHunter
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:36, 8 March 2022
Regtools
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]][[Category:Genomics]]

2 KB (254 words) - 21:41, 21 August 2022
PHITS
[[Category:Software]][[Category:Physics]]

3 KB (336 words) - 12:38, 15 May 2024
Category:Chemistry
[[Category:Software]]

34 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Kover
[[Category:Software]][[Category:Phylogenetics]]

3 KB (336 words) - 15:43, 18 August 2020
Pyfasta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:58, 21 August 2022
IPOPT
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.

2 KB (263 words) - 17:46, 15 August 2022
MarginPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:22, 6 December 2019
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
Momi
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (305 words) - 19:03, 4 April 2022
Trgt
[[Category:Software]]

2 KB (273 words) - 14:45, 28 July 2023
Maxima
[[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (298 words) - 21:21, 6 December 2019
Svim
[[Category:Software]][[Category:Biology]]

3 KB (358 words) - 17:14, 31 May 2022
Sharing Within A Cluster
...in their storage trees. This is the most appropriate way to share data and software among group members.

4 KB (682 words) - 15:25, 13 July 2023
Xpclr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:25, 26 August 2020
Ansysem
[[Category:Software]][[Category:Physics]]

2 KB (240 words) - 16:11, 23 March 2023
MetaGeneMark
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (298 words) - 21:22, 6 December 2019
MSTmap
[[Category:Software]][[Category:Phylogenetics]] MSTmap is a software tool that is capable of constructing genetic linkage maps efficiently and a

3 KB (354 words) - 13:45, 25 March 2020
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
Nanostripper
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (250 words) - 21:15, 13 May 2022
Category:Material Science
[[Category:Software]]

5 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Bcftools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 19:09, 11 April 2024
Imaginaire
[[Category:Software]]

3 KB (302 words) - 17:55, 15 August 2022
Sickle
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (551 words) - 22:56, 21 August 2022
Hifiasm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 22:23, 27 August 2020
IRAP
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (296 words) - 20:10, 24 August 2022
TreeBreaker
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (271 words) - 21:29, 6 December 2019
Dram
[[Category:Software]]

3 KB (361 words) - 14:11, 21 October 2022
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
Stable-diffusion
[[Category:Software]][[Category:Machine Learning]]

2 KB (245 words) - 17:04, 31 January 2023
Test
[[Category:Software]][[Category:shell]]

2 KB (229 words) - 21:29, 6 December 2019
MP-EST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

4 KB (489 words) - 12:01, 19 August 2022
Delineate
[[Category:Software]]

3 KB (303 words) - 20:46, 18 May 2021
PlantTribes
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 13:29, 4 October 2021
Mccortex
[[Category:Software]][[Category:Phylogenetics]]

3 KB (297 words) - 22:22, 8 September 2020
OpenSim
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 17:57, 19 August 2022
PhyloParser
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 18:17, 21 August 2022
Discvrseq
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (310 words) - 20:10, 11 April 2022
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
Scikit-learn
[[Category:Software]][[Category:Data_Science]]

2 KB (272 words) - 21:23, 6 March 2024
LncScore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:21, 6 December 2019
EXpress
[[Category:Software]][[Category:Biology]][[Category:NGS]] This module enables the use of the eXpress software

3 KB (383 words) - 18:53, 12 August 2022
MuSE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (333 words) - 13:23, 19 July 2021
Flexbar
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

2 KB (285 words) - 16:45, 15 August 2022
Deepbgc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 20:11, 29 September 2020
MACS
[[Category:Software]][[Category:ChIP-Seq]][[Category:Biology]] |{{#vardefine:exe|}} 

3 KB (384 words) - 19:47, 12 August 2022
CRISPRCasFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 21:11, 6 December 2019
SWSC-EN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 14:46, 8 January 2020
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
Bzip2
[[Category:Software]][[Category:Utility]][[Category:Library]]

2 KB (289 words) - 13:16, 15 August 2022
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
SE-MEI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 22:30, 21 August 2022
RSEG
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (308 words) - 21:58, 21 August 2022
Finemap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 14:48, 10 November 2020
BWA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (317 words) - 18:22, 12 August 2022
Bowtie
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (443 words) - 13:06, 15 August 2022
GPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:14, 15 August 2022
Razers3
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 16:50, 10 June 2022
PCRE
[[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.

3 KB (307 words) - 12:10, 26 August 2022
Pomoxis
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (285 words) - 18:48, 21 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
Ksrates
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (264 words) - 13:30, 15 August 2022
PyVCF
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (236 words) - 20:08, 21 August 2022
Clview
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 13:48, 15 August 2022
CD-HIT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (354 words) - 18:24, 12 August 2022
RFMIX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 14:01, 11 June 2020
Blender
[[Category:Software]][[Category:Graphics]]

2 KB (295 words) - 13:03, 15 August 2022
NCBI BLAST+
[[Category:Software]][[Category:biology]]

3 KB (344 words) - 19:55, 12 August 2022
GEMMA
[[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode

2 KB (279 words) - 21:21, 6 December 2019
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
FlairNLP
[[Category:Software]][[Category:Machine Learning]]

3 KB (419 words) - 15:42, 25 August 2022
Category:Math
[[Category:Software]]

64 members (1 subcategory, 0 files) - 21:45, 24 October 2022
Pycharm-pro
[[Category:Software]]

2 KB (271 words) - 15:56, 27 June 2023
CDBFasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 15:35, 2 December 2020
R libraries
[[Category:Software]]

265 bytes (30 words) - 13:59, 30 June 2017
CANVAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:23, 26 August 2020
HapQTL
[[Category:Software]][[Category:Biology]] This software performs association testing between local haplotypes and phenotypes at eac

2 KB (247 words) - 18:15, 15 August 2022
MPB
[[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele

3 KB (344 words) - 21:21, 6 December 2019
Gephi
[[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.

3 KB (337 words) - 17:42, 11 January 2023
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
Release
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (272 words) - 14:24, 11 October 2022
VMD
[[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.

3 KB (384 words) - 17:33, 22 August 2022
MZMine
[[Category:Software]][[Category:Spectroscopy]][[Category:Biology]]

3 KB (417 words) - 13:28, 7 July 2023
KofamScan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 13:48, 26 February 2021
HyPhy
[[Category:Software]][[Category:Biology]][[Category:Genomics]] HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogene

3 KB (380 words) - 18:36, 15 August 2022
Fast-gep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 15:46, 22 July 2022
HISAT2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Alignment]] |{{#vardefine:url|https://ccb.jhu.edu/software/hisat2/index.shtml}}

3 KB (399 words) - 19:31, 24 August 2022
IAnnotateSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge

3 KB (330 words) - 21:21, 6 December 2019
Mapdamage
[[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]

3 KB (299 words) - 21:28, 16 September 2022
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
BrainIAK
[[Category:Software]][[Category:Imaging]]

3 KB (351 words) - 16:19, 27 May 2022
Bioawk
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 12:54, 15 August 2022
EQtlBma
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (254 words) - 18:52, 12 August 2022
CNCI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (374 words) - 14:09, 23 April 2021
ProSplign
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 17:08, 1 June 2022
NpScarf
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:29, 4 September 2020
Staden
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (254 words) - 15:59, 22 August 2022
Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
Category:Data Science
[[Category:Software]][[Category:Data]]

41 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
Emerald
[[Category:Software]][[Category:Biology]]

3 KB (324 words) - 19:16, 29 October 2023
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
Slicer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...le platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform

3 KB (346 words) - 15:42, 8 April 2024
Cliquesnv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 20:24, 1 May 2024
Ima2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software#IMa2}}

2 KB (265 words) - 18:45, 15 August 2022
Miniasm
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (306 words) - 20:10, 18 August 2022
Git
[[Category:Software]][[Category:Revision Control]]

2 KB (301 words) - 17:09, 15 August 2022
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
PyEXR
[[Category:Software]][[Category:Programming]]

2 KB (245 words) - 12:25, 26 August 2022
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
Mopac
[[Category:Software]] MOPAC[1], the Molecular Orbital PACkage, is software for performing quantum chemistry calculations based on semiempirical thermo

3 KB (292 words) - 15:05, 8 April 2024
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
Convert3D
[[Category:Software]]

2 KB (279 words) - 17:38, 15 August 2022
Memory: Shared vs Distributed
...he processors can access other processor's memory only through network. In software sense, it means each processor only can see local machine memory directly a

2 KB (346 words) - 19:44, 16 January 2023
LEfSe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:14, 29 September 2020
Category:Biology
[[Category:Research]][[Category:Software]]

985 members (9 subcategories, 0 files) - 17:21, 3 June 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
Pm4py
[[Category:Software]][[Category:Machine Learning]][[Category:Data Mining]]

3 KB (336 words) - 22:06, 5 June 2023
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
DISCOVAR de novo
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}

3 KB (326 words) - 14:41, 15 August 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
DScribe
[[Category:Software]][[Category:Machine Learning]]

2 KB (267 words) - 16:52, 17 December 2021
Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
Tiara
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 16:36, 22 August 2022
Category:Programming
[[Category:Software]]

77 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Mvftools
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 13:58, 30 April 2020
RevBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (267 words) - 16:04, 10 June 2022
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
CIRCexplorer2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 21:03, 6 December 2019
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
RGAugury
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (354 words) - 21:29, 30 November 2023
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...and 2) reduce reference bias as compared to mapping based approaches. The software is designed to work in situations where a whole-genome assembly is not the

3 KB (430 words) - 14:32, 12 August 2022
BBMap
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

3 KB (349 words) - 17:55, 10 June 2022
Imoka
iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)

3 KB (346 words) - 17:07, 27 May 2022
CheckM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (327 words) - 18:27, 12 August 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
Talesf
[[Category:Software]][[Category:Phylogenetics]]

2 KB (256 words) - 21:29, 6 December 2019
MarkerMiner
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (385 words) - 19:47, 12 August 2022
Quantisnp
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (297 words) - 20:29, 12 August 2022
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
Velocyto
[[Category:software]][[Category:biology]][[Category:sequencing]]

2 KB (275 words) - 00:33, 25 May 2023
MeShClust
[[Category:Software]][[Category:Biology]]

2 KB (244 words) - 20:44, 27 January 2021
Category:Library
[[Category:Software]] Libraries available for use by other software and for development.

87 members (0 subcategories, 0 files) - 04:37, 29 June 2012
Connectomemapper3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:55, 15 August 2022
RepeatModeler
[[Category:Software]][[Category:Biology]]

3 KB (297 words) - 20:32, 12 August 2022
MOSAIK
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} 

3 KB (414 words) - 11:59, 19 August 2022
ForeSeqs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 21:21, 6 December 2019
Metaxa2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://microbiology.se/software/metaxa2/}}

3 KB (300 words) - 19:29, 18 August 2022
How To ResVault
The full documentation for tiCrypt software can be found at [https://ticrypt.com/docs/frontend2/getting-started tiCrypt # Run the installer software for the tiCrypt Connect client and follow the prompts.

6 KB (953 words) - 20:01, 18 July 2023
Mmaction2
[[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]

2 KB (277 words) - 19:16, 6 June 2023
Quickquartet
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:02, 21 August 2022
Face morpher
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 15:18, 15 August 2022
Amphora2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

3 KB (333 words) - 17:35, 10 June 2022
GenomicNeuralnet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:09, 27 August 2020
Zorro
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (284 words) - 17:54, 22 August 2022
Gurobi
[[Category:Software]][[Category:Math]][[Category:Programming]]

2 KB (269 words) - 12:22, 26 August 2022
Category:Shell
[[Category:CLI]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:29, 23 August 2022
Auto3DEM
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://cryoem.ucsd.edu/wikis/software/start.php?id=auto3dem:home}}

3 KB (433 words) - 15:24, 12 August 2022
Dsistudio
[[Category:Software]][[Category:Machine Learning]] DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsycholo

2 KB (277 words) - 20:10, 23 May 2022
OrthoFiller
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 20:02, 31 May 2022
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
HMMRATAC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 14:22, 7 May 2021
Category:Applications
#REDIRECT [[Category:Software]]

0 members (0 subcategories, 0 files) - 17:26, 3 June 2022
Vg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (299 words) - 14:42, 4 September 2020

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