Search results

Irep
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (268 words) - 19:23, 12 August 2022
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Cgmaptools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 21:01, 6 December 2019
SWSC-EN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 14:46, 8 January 2020
BWA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (317 words) - 18:22, 12 August 2022
SU2
[[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.

2 KB (278 words) - 18:50, 1 June 2022
Bxh xcede tools
[[Category:Software]][[Category:Biology]]

2 KB (291 words) - 18:22, 12 August 2022
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
QGIS
[[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (288 words) - 20:27, 24 August 2022
Primus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 21:22, 6 December 2019
ATAT
[[Category:Software]][[Category:Material Science]]

2 KB (247 words) - 15:18, 12 August 2022
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
Kmerdb
[[Category:Software]][[Category:genomics]][[Category:Biology]]

2 KB (277 words) - 13:30, 15 August 2022
GPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:14, 15 August 2022
Viralmsa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 19:56, 27 May 2022
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
PCIT
[[Category:Software]][[Category:Biology]]

3 KB (302 words) - 20:19, 12 August 2022
AdapterRemoval
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 20:47, 11 August 2022
Phylopypruner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 18:41, 27 May 2022
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
BSseeker2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:40, 10 June 2022
Jbrowse2
[[Category:Software]][[Category:Web]]

2 KB (246 words) - 17:50, 15 August 2022
PETSc
[[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.

3 KB (337 words) - 15:25, 19 August 2022
RFMIX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 14:01, 11 June 2020
Category:Data
[[Category:Software]]

12 members (5 subcategories, 0 files) - 20:50, 2 June 2022
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
OrganellePBA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:22, 6 December 2019
Zagros
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}

2 KB (289 words) - 17:54, 22 August 2022
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
D2go
[[Category:Software]][[Category:Machine Learning]] D2Go is a production ready software system from FacebookResearch, which supports end-to-end model training and

2 KB (251 words) - 14:23, 15 August 2022
IOAPI
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (341 words) - 19:35, 24 August 2022
CANVAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:23, 26 August 2020
V-pipe
[[Category:Software]]

3 KB (296 words) - 17:20, 22 August 2022
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
RaGOO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
TriMetAss
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/trimetass/}}

3 KB (344 words) - 20:52, 12 August 2022
Bridger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (341 words) - 13:14, 15 August 2022
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
Pcangsd
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (343 words) - 18:21, 8 December 2023
PAUP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.

2 KB (249 words) - 20:15, 12 August 2022
Fast-gep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 15:46, 22 July 2022
HiC-Pro
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Genomics]]

3 KB (432 words) - 18:17, 15 August 2022
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
Csubst
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (380 words) - 22:12, 26 July 2023
PROJ
[[Category:Software]][[Category: Library]][[Category: Geospatial]]

2 KB (240 words) - 20:26, 24 August 2022
Predector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 20:21, 31 May 2022
Mach2VCF
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 14:49, 10 June 2022
Biolite
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]]

3 KB (362 words) - 12:54, 15 August 2022
Data Science Platform
*'''[[TensorFlow]]:''' TensorFlow is an open-source software library widely used for implementing artificial neural networks and deep le *'''[[Rapidsai]]:''' RAPIDS AI is a suite of CUDA-enabled open-source software libraries and APIs by NVIDIA. It accelerates end-to-end data science pipeli

5 KB (663 words) - 19:52, 14 May 2024
Kraken
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}

4 KB (483 words) - 19:28, 12 August 2022
NpScarf
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:29, 4 September 2020
Graphtyper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (373 words) - 15:43, 17 November 2021
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
Fast-Plast
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (487 words) - 21:20, 6 December 2019
Category:Data Science
[[Category:Software]][[Category:Data]]

41 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Tuxedo
[[Category:Software]][[Category:Biology]] See individual software wiki pages for more details.

598 bytes (81 words) - 20:53, 12 August 2022
Category:Data Mining
[[Category:Data]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:25, 23 August 2022
Spark
[[Category:Software]][[Category:Utility]]

11 KB (1,573 words) - 22:01, 15 December 2022
ASPECT
[[Category:Software]][[Category:Library]]

2 KB (285 words) - 15:16, 3 June 2022
Miniasm
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (306 words) - 20:10, 18 August 2022
PhyloTF2
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Alignment]]

3 KB (320 words) - 18:22, 21 August 2022
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
SUPPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 21:24, 6 December 2019
PyEXR
[[Category:Software]][[Category:Programming]]

2 KB (245 words) - 12:25, 26 August 2022
Nextflow
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (336 words) - 16:24, 19 August 2022
DeSALT
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

3 KB (350 words) - 14:38, 15 August 2022
R8s
[[Category:Software]][[Category:phylogenetics]]

3 KB (456 words) - 21:24, 6 December 2019
LCModel
[[Category:Software]] ...maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-tes

4 KB (497 words) - 16:28, 15 December 2022
LEfSe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:14, 29 September 2020
Bakta
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (308 words) - 15:28, 12 August 2022
Gscripts
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 17:25, 15 August 2022
Pm4py
[[Category:Software]][[Category:Machine Learning]][[Category:Data Mining]]

3 KB (336 words) - 22:06, 5 June 2023
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
Assexon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 20:17, 10 February 2020
Finemap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 14:48, 10 November 2020
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
PyTorch
[[Category:Software]][[Category:Library]][[Category:Math]] ...neural networks and deep learning. PyTorch also has a large user base and software ecosystem.

5 KB (691 words) - 16:39, 14 December 2022
Datamash
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}

2 KB (247 words) - 15:01, 10 June 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
Staphb-toolkit
[[Category:Software]][[Category:Biology]]

2 KB (248 words) - 19:54, 2 June 2022
Mvftools
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 13:58, 30 April 2020
Svim
[[Category:Software]][[Category:Biology]]

3 KB (358 words) - 17:14, 31 May 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
WIsH
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:29, 6 December 2019
Illumiprocessor
[[Category:Software]][[Category:Phylogenetics]]

4 KB (452 words) - 18:44, 15 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
Managing GDrive Access
{{ note|"project-367116221053" is the name that the developer of the "gdrive" software () provided to Google when registering the application for review and accep

3 KB (444 words) - 14:06, 16 March 2023
C-wap
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

2 KB (281 words) - 13:16, 15 August 2022
Imoka
iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)

3 KB (346 words) - 17:07, 27 May 2022
Imaginaire
[[Category:Software]]

3 KB (302 words) - 17:55, 15 August 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
DRep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
Bubbleparse
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (246 words) - 14:43, 10 June 2022
Draft:UFRC Help and Documentation Testz
==[[:Category:Applications|Software and Reference Data]] [[Image:Software.png|right|frameless|upright=0.1]]==

4 KB (515 words) - 14:06, 30 March 2023
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
Ggsashimi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 16:38, 27 May 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
Connectomemapper3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:55, 15 August 2022
Srst2
[[Category:Software]]

2 KB (278 words) - 17:42, 13 December 2022
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
SequelQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
DDocent
[[Category:Software]][[Category:Phylogenetics]]

2 KB (311 words) - 14:29, 15 August 2022
GDAL
[[Category:Software]][[Category:Geospatial]][[Category:Library]]

3 KB (313 words) - 18:21, 8 July 2022
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
Clean
[[Category: software]] [[Category: biology]] [[Category: Machine Learning]]

3 KB (393 words) - 20:43, 22 February 2024
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
GenomicNeuralnet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:09, 27 August 2020
MAGeCK-VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 20:21, 26 May 2022
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
EpiNano
[[Category:Software]][[Category:Biology]][[Category: NGS]]

2 KB (241 words) - 18:35, 21 July 2022
Minced
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (263 words) - 15:38, 10 June 2022
ASTRID
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 15:16, 12 August 2022
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
Vg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (299 words) - 14:42, 4 September 2020
LazyPredict
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 14:02, 6 December 2021
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
Taiyaki
[[Category:Software]][[Category:Phylogenetics]] Taiyaki is research software for training models for basecalling Oxford Nanopore reads.

2 KB (240 words) - 18:58, 1 June 2022
DEXTRACTOR
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (441 words) - 19:20, 10 June 2022
SQL Developer
[[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.

3 KB (323 words) - 17:32, 15 August 2022
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Musket
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (351 words) - 13:44, 19 August 2022
QTL-seq
[[Category:Software]]

3 KB (410 words) - 19:05, 31 January 2022
IDBA-UD
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (354 words) - 18:40, 15 August 2022
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
Nullarbor
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 19:38, 31 May 2022
Seqmagick
[[Category:Software]][[Category:Biology]]

2 KB (269 words) - 22:35, 21 August 2022
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
MOABS
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 19:53, 12 August 2022
TreeTime
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 17:44, 2 November 2020
ExpansionHunterDenovo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (266 words) - 20:35, 8 March 2022
Bwa-meth
[[Category:Software]]

2 KB (239 words) - 16:59, 24 August 2023
METAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (426 words) - 19:27, 18 August 2022
DeepMReye
[[Category:Software]][[Category:biology]][[Category:Library]]

3 KB (316 words) - 18:49, 12 August 2022
PhaME
[[Category:Software]][[Category:phylogenetics]]

2 KB (287 words) - 14:18, 9 March 2020
CDBFasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 15:35, 2 December 2020
Category:Revision Control
[[Category:Software]][[Category:CLI]]

3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
NCBI GenBank Tools
[[Category:Software]][[Category:Biology]][[Category:Healthcare]]

2 KB (291 words) - 14:33, 19 August 2022
MapThin
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:21, 6 December 2019
DL POLY
[[Category:Software]][[Category:Molecular Dynamics]] DL_POLY is a general purpose classical molecular dynamics (MD) simulation software developed at Daresbury Laboratory by I.T. Todorov and W. Smith.

2 KB (309 words) - 17:00, 6 June 2022
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
InParanoid
[[Category:Software]][[Category:Biology]]

2 KB (236 words) - 19:20, 12 August 2022
Pod5
[[Category:Software]]

2 KB (292 words) - 17:31, 1 July 2022
SSPACE
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 20:44, 12 August 2022
NanoCount
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 20:28, 14 May 2020
KofamScan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 13:48, 26 February 2021
Category:Chemistry
[[Category:Software]]

34 members (0 subcategories, 0 files) - 21:45, 24 October 2022
NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
PsRobot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 17:12, 1 June 2022
Nanocaller
[[Category:Software]]

3 KB (351 words) - 15:41, 16 March 2023
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
BoxCLI
[[Category:Software]][[Category:File Management]][[Category:Web]][[Category:Programming]]

2 KB (253 words) - 13:52, 21 October 2022
BEAGLE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou

5 KB (615 words) - 15:36, 14 December 2022
GTOOL
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}

3 KB (319 words) - 12:51, 10 September 2020
CNCI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (374 words) - 14:09, 23 April 2021
Sharing Within A Cluster
...in their storage trees. This is the most appropriate way to share data and software among group members.

4 KB (682 words) - 15:25, 13 July 2023
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
Bifrost
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:11, 6 December 2019
IDBA-MT
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ased on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig leng

3 KB (315 words) - 21:21, 6 December 2019
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
Chewiesnake
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (457 words) - 15:02, 23 October 2023
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
EAGLE
[[Category:Software]][[Category:Phylogenetics]] The Enhanced Artificial Genome Engine (EAGLE) software is designed to simulate the behaviour of Illumina's Next Generation Sequenc

2 KB (266 words) - 22:29, 26 August 2020
AAFTF
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]

2 KB (245 words) - 20:45, 11 August 2022
Sickle
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (551 words) - 22:56, 21 August 2022
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
Hgtector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (253 words) - 17:04, 10 October 2022
Canu
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (358 words) - 14:26, 14 April 2020
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Genesis
[[Category:Software]] ...ftware under the LGPLv3. Earlier versions (<=1.4) were distributed as free software under the GPLv2 license.

3 KB (368 words) - 17:51, 3 April 2024
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
HLAminer
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

4 KB (541 words) - 14:55, 14 December 2022
PICSL
[[Category:Software]] This package contains a software implementation for joint label fusion and

3 KB (390 words) - 20:31, 24 August 2022
PlantTribes
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 13:29, 4 October 2021
Porechop
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:23, 6 December 2019
AlphaPulldown
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] If you use this software, please cite it along the dependencies it uses internally, at least:

3 KB (300 words) - 14:11, 10 July 2023
Category:Scheduler
[[Category:Categories]][[Category:Software]]

18 members (1 subcategory, 0 files) - 15:28, 23 August 2022
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
Tcoffee
[[Category:Software]][[Category:Biology]]

2 KB (280 words) - 20:46, 12 August 2022
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
Medaka
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (290 words) - 14:37, 21 August 2023
FIGARO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 16:27, 15 December 2021
Flexbar
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

2 KB (285 words) - 16:45, 15 August 2022
FEniCS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:20, 6 December 2019
Tapestri
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 19:07, 1 June 2022
TraCeR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:40, 22 August 2022
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
ROOTPy
[[Category:Software]][[Category:Data Science]]

3 KB (389 words) - 16:49, 21 August 2022
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
Bamsurgeon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:29, 22 September 2020
SNPsplit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (282 words) - 20:38, 27 May 2022
RSEG
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (308 words) - 21:58, 21 August 2022
Mlst
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:22, 6 December 2019
Clairvoyante
[[Category:Software]][[Category:Phylogenetics]]

4 KB (453 words) - 13:39, 15 August 2022
MetaLAFFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 13:52, 23 September 2021
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
VirusFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] VirusFinder 2 is a new software tool for characterizing intra-host viruses through next generation sequenci

3 KB (410 words) - 21:29, 6 December 2019
Bowtie
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (443 words) - 13:06, 15 August 2022
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
Ea-utils
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

4 KB (438 words) - 14:54, 15 August 2022
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
Crux
[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden

2 KB (293 words) - 18:39, 12 August 2022
Allhic
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (299 words) - 12:35, 12 August 2022
PRINSEQ++
[[Category:Software]][[Category:phylogenetics]]

2 KB (298 words) - 18:11, 15 April 2020
MeShClust
[[Category:Software]][[Category:Biology]]

2 KB (244 words) - 20:44, 27 January 2021
CD-HIT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (354 words) - 18:24, 12 August 2022
Pbtranscript-tofu
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (324 words) - 20:11, 24 August 2022
Magpurify
[[Category:Software]] Each module in the software package was designed to be highly specific. This means that not all contami

3 KB (332 words) - 17:35, 24 May 2023
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
Lingua
[[Category:Software]]

3 KB (299 words) - 20:02, 15 August 2022
ANDI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 14:11, 20 February 2023
Pbipa
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBi

2 KB (268 words) - 21:58, 27 April 2022
NMRPipe
[[Category:Software]][[Category:Biology]] NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An

3 KB (325 words) - 15:55, 23 August 2022
NECAT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 13:32, 23 June 2020
Face morpher
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 15:18, 15 August 2022
R libraries
[[Category:Software]]

265 bytes (30 words) - 13:59, 30 June 2017
GMP
[[Category:Software]][[Category:Library]]

3 KB (373 words) - 13:43, 3 June 2022
NtEdit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (316 words) - 21:23, 6 December 2019
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
PfamScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:19, 12 August 2022
Mykrobe
[[Category:Software]]

2 KB (246 words) - 16:37, 21 June 2023
Deepmicrobes
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Machine Learning]]

2 KB (240 words) - 14:33, 15 August 2022
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
CasOFFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:58, 26 August 2020
HMMRATAC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 14:22, 7 May 2021
HyPhy
[[Category:Software]][[Category:Biology]][[Category:Genomics]] HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogene

3 KB (380 words) - 18:36, 15 August 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
GPhoCS
[[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim

3 KB (300 words) - 21:20, 6 December 2019
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
Slivar
[[Category:Software]][[Category:Biology]]

2 KB (295 words) - 19:28, 10 December 2023
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022

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