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  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]]
    2 KB (255 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:formatting]][[Category:typesetting]][[Category:document prepara
    2 KB (272 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It
    3 KB (360 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:GUI Apps]][[Category:Library]]
    3 KB (392 words) - 21:17, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    3 KB (358 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (294 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (251 words) - 14:31, 27 January 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (289 words) - 19:43, 4 November 2020
  • [[Category:Software]][[Category:Phylogenetics]] HyDe is a software package that detects hybridization in phylogenomic data sets using phylogen
    3 KB (301 words) - 20:41, 30 September 2020
  • [[Category:Software]][[Category:bio]][[Category:bioinformatics]][[Category:phylogenetics]] |{{#vardefine:url|http://phylo.bio.ku.edu/software/sate/sate.html}}
    4 KB (486 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    4 KB (487 words) - 21:20, 6 December 2019
  • [[Category:Software]]
    3 members (0 subcategories, 0 files) - 20:41, 11 April 2016
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
    3 KB (294 words) - 21:03, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]]
    3 KB (298 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Statistics]] ...ile areas so that they are appropriate to where you have installed the ESS software.
    1 KB (189 words) - 19:16, 5 April 2018
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]][[Category:Genomics]]
    3 KB (342 words) - 15:30, 26 October 2021
  • [[Category:Software]]
    3 KB (350 words) - 14:06, 23 April 2020
  • [[Category:Software]]
    3 KB (302 words) - 18:59, 1 February 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and p
    2 KB (284 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (285 words) - 21:15, 6 December 2019
  • [[Category:Software]][[Category:Library]] |{{#vardefine:url|http://www.gnu.org/software/glpk/glpk.html}}
    2 KB (272 words) - 21:20, 6 December 2019
  • [[Category:Software]]
    2 members (0 subcategories, 0 files) - 18:46, 7 July 2017
  • [[Category:Software]][[Category:Bioinformatics]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}
    2 KB (287 words) - 21:06, 6 December 2019
  • [[Category:Software]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.
    3 KB (337 words) - 21:31, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (250 words) - 13:32, 23 June 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (279 words) - 18:08, 31 March 2021
  • [[Category:Software]][[Category:Biology]][[Category:Genetics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi
    3 KB (326 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Gene Ontology]]
    2 KB (275 words) - 19:42, 16 February 2018
  • [[Category:Software]][[Category:Image processing]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
    3 KB (317 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (237 words) - 21:23, 6 December 2019
  • [[Category:Software]]
    2 KB (254 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Alignment]]
    3 KB (347 words) - 20:30, 25 May 2021
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |{{#vardefine:url|http://cab.spbu.ru/software/spades/}}
    2 KB (280 words) - 18:40, 29 July 2021
  • [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}
    2 KB (277 words) - 22:00, 26 August 2020
  • [[Category:Software]]
    3 KB (339 words) - 13:56, 12 May 2021
  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]]
    4 KB (452 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]]
    2 KB (246 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (248 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    2 KB (257 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    2 KB (236 words) - 21:21, 6 December 2019
  • [[Category:Software]] Software for ecological analysis and modeling.
    3 members (0 subcategories, 0 files) - 04:32, 29 June 2012
  • [[Category:Software]][[Category:Galaxy]]
    3 KB (417 words) - 20:34, 18 April 2018
  • [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://cmpg.unibe.ch/software/fastsimcoal2/}}
    4 KB (479 words) - 22:00, 27 August 2020
  • [[Category:Software]]
    2 KB (264 words) - 20:55, 19 July 2021
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.cmpg.unibe.ch/software/PGDSpider/}}
    3 KB (385 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:editor]][[Category:text]][[Category:ide]][[Category:vim]]
    3 KB (302 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (351 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    2 KB (278 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (234 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] '''Note:''' this software is installed, but not supported as the upstream authors do not consider it
    2 KB (300 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Simulation]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    3 KB (350 words) - 18:58, 7 July 2017
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (250 words) - 14:35, 4 September 2020
  • [[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.
    6 KB (913 words) - 19:58, 2 August 2021
  • [[Category:Software]][[Category:biology]][[Category:ngs]][[Category:pacbio]]
    2 KB (242 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (345 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]]
    2 KB (242 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:genomics]]
    3 KB (336 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Chemistry]] ...you will be added to the "gaussian" user group and will have access to the software.
    7 KB (1,054 words) - 21:00, 2 August 2021
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (239 words) - 21:06, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (267 words) - 22:42, 8 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    3 KB (335 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Astronomy]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
    3 KB (324 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (257 words) - 21:21, 6 December 2019
  • [[Category:Software]]
    3 KB (324 words) - 18:57, 17 September 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (332 words) - 21:24, 6 December 2019
  • [[Category:Software]] ...e application for review and acceptance. A copy of this reviewed/accepted software is installed in the HiPerGator environment and must keep this name to be re
    6 KB (815 words) - 18:01, 4 August 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://tree.bio.ed.ac.uk/software/seqgen/}}
    3 KB (349 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]][[Category:ngs]]
    2 KB (297 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Emulators]]
    3 KB (363 words) - 21:29, 6 December 2019
  • [[Category:Software]]
    3 KB (318 words) - 21:21, 6 December 2019
  • [[Category:Software]]
    2 KB (248 words) - 20:31, 2 August 2021
  • [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}
    2 KB (275 words) - 19:52, 10 February 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (269 words) - 15:48, 17 November 2020
  • [[Category:Software]][[Category:biology]]
    2 KB (288 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (284 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    4 KB (483 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:GUI]]
    1 KB (203 words) - 20:54, 18 June 2019
  • export2graphlan is a conversion software tool for producing both
    3 KB (314 words) - 21:27, 15 February 2021
  • [[Category:Software]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (352 words) - 20:29, 2 August 2021
  • [[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”
    2 KB (269 words) - 20:45, 30 April 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (260 words) - 19:25, 18 February 2021
  • [[Category:Software]][[Category:biology]]
    3 KB (294 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Kinetics]] Cantera is a suite of object-oriented software tools for problems involving
    3 KB (306 words) - 21:11, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (269 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Library]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/udunits/}}
    2 KB (274 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (308 words) - 21:05, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    6 KB (915 words) - 21:03, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.
    3 KB (339 words) - 21:01, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in
    3 KB (311 words) - 14:59, 27 July 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (329 words) - 14:25, 20 April 2021
  • [[Category:Software]][[Category:Computer Science]] |{{#vardefine:url|https://www.tcl.tk/software/tcllib/}}
    2 KB (273 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]]
    2 KB (260 words) - 21:20, 6 December 2019
  • [[Category: Software]] ==External Software Components==
    559 bytes (87 words) - 18:51, 17 December 2018
  • [[Category:Software]][[Category:Bioinformatics]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF
    3 KB (313 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal
    3 KB (318 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (248 words) - 21:21, 6 December 2019
  • [[Category:Software]]
    2 KB (263 words) - 21:11, 2 August 2021
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (290 words) - 22:16, 26 August 2020
  • [[Category:Software]]
    4 KB (486 words) - 12:59, 1 June 2021
  • [[Category:Software]][[Category:Statistics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    5 KB (673 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    3 KB (418 words) - 21:29, 6 December 2019
  • [[Category:Software]]
    3 KB (320 words) - 21:19, 6 December 2019
  • [[Category:Software]][[Category:Machine Learning]] This software is installed in a container.
    2 KB (280 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:SNP]]
    3 KB (331 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}
    2 KB (302 words) - 21:22, 6 December 2019
  • [[Category:Software]]
    3 KB (303 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (263 words) - 22:13, 27 August 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (271 words) - 20:44, 2 November 2021
  • [[Category:Software]]
    2 KB (266 words) - 20:30, 2 August 2021
  • [[Category:Software]]
    2 KB (273 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (310 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    2 KB (279 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (271 words) - 21:22, 6 December 2019
  • [[Category:Software]] |{{#vardefine:url|http://www.gnu.org/software/mc/}}
    2 KB (263 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (336 words) - 21:31, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (245 words) - 14:47, 4 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (269 words) - 21:18, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b
    2 KB (269 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (291 words) - 21:20, 6 December 2019
  • [[Category:Software]]
    2 KB (240 words) - 13:40, 8 October 2020
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (247 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (454 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Library]][[Category:Math]] |{{#vardefine:url|https://software.intel.com/en-us/mkl}}
    3 KB (372 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Image Converter]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]
    3 KB (301 words) - 13:40, 14 September 2020
  • [[Category:Software]][[Category:biology]][[Category:genomics]]
    3 KB (333 words) - 21:02, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Imaging]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn
    3 KB (286 words) - 21:19, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (305 words) - 16:38, 24 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    2 KB (251 words) - 21:11, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (248 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f
    2 KB (289 words) - 16:24, 2 January 2020
  • [[Category:Software]][[Category:Bioinformatics]] |{{#vardefine:url|http://www.uvm.edu/genomics/software/VIcaller.html}}
    3 KB (412 words) - 20:02, 8 October 2020
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (250 words) - 21:11, 6 December 2019
  • [[Category:Software]]
    3 KB (363 words) - 18:48, 2 August 2021
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    2 KB (280 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    3 KB (291 words) - 21:21, 6 December 2019
  • ...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==
    4 KB (667 words) - 19:19, 11 February 2021
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (321 words) - 17:55, 6 March 2020
  • [[Category:Software]][[Category:Phylogenetics]] Software and source code of FastqPuri. It creates quality reports of fastq files and
    2 KB (272 words) - 15:29, 19 January 2021
  • [[Category:Software]][[Category:biology]][[Category:genomics]]
    2 KB (285 words) - 19:21, 20 August 2020
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}
    3 KB (339 words) - 21:11, 6 December 2019
  • [[Category:Software]]
    2 KB (265 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Proteomics]]
    2 KB (259 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    2 KB (266 words) - 15:39, 5 April 2018
  • [[Category:Software]] CellProfiler is free open-source software designed to enable biologists without training in computer vision or progra
    7 KB (869 words) - 21:12, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (244 words) - 14:18, 20 May 2020
  • [[Category:Software]][[Category:Geospatial]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.
    3 KB (408 words) - 16:30, 8 March 2021
  • [[Category:Software]]
    3 KB (297 words) - 21:02, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembler]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}
    3 KB (326 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (288 words) - 21:11, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    2 KB (268 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (272 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    4 KB (685 words) - 18:52, 9 June 2021
  • [[Category:Software]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou
    5 KB (578 words) - 21:03, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (275 words) - 22:26, 26 August 2020
  • [[Category:Software]]
    3 KB (331 words) - 13:40, 30 April 2021
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (263 words) - 18:23, 8 September 2021
  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]]
    3 KB (298 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (267 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genetics]]
    2 KB (273 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (238 words) - 21:21, 6 December 2019
  • [[Category:Software]]
    265 bytes (30 words) - 13:59, 30 June 2017
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    3 KB (379 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] ...ed in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good sca
    3 KB (364 words) - 13:25, 27 August 2020
  • [[Category:Software]]
    3 KB (426 words) - 16:41, 28 June 2021
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}
    2 KB (287 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:PDF]]
    2 KB (254 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (253 words) - 21:11, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po
    2 KB (245 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (251 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    3 KB (386 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] GASV (Geometric Analysis of Structural Variants) is software for identifying and structural variants (SVs) from paired-end sequencing da
    2 KB (245 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (316 words) - 22:28, 27 August 2020
  • [[Category:Software]]
    4 KB (451 words) - 16:01, 24 November 2021
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (256 words) - 21:18, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:phylogenetics]]
    2 KB (258 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (352 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/metaxa2/}}
    3 KB (298 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.
    2 KB (293 words) - 21:13, 6 December 2019
  • [[Category:Software]]
    2 KB (293 words) - 20:28, 2 August 2021
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    3 KB (456 words) - 19:19, 11 February 2021
  • [[Category:Software]][[Category:Library]]
    2 KB (241 words) - 22:27, 8 September 2020
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    3 KB (299 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Sequence]]
    2 KB (294 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim
    3 KB (300 words) - 21:20, 6 December 2019
  • [[Category:Software]]
    2 KB (251 words) - 21:06, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:genome]]
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  • [[Category:Software]][[Category:Biology]]
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.
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  • [[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo
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  • [[Category:Software]][[Category:PacBio]]
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  • CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s
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  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]][[Category:ngs]][[Category:
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  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:NGS]] fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are su
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  • ...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Metagenomics]]
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  • [[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}
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  • [[Category:Software]][[Category:Quantum chemistry]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
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  • [[Category:Software]][[Category:Bioinformatics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
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  • [[Category:Software]][[Category:Biochemistry]] NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An
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  • [[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp
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  • [[Category:Software]][[Category:Phylogenetics]]
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  • [[Category:Software]][[Category:Phylogenetics]] Genome-wide Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequen
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Biology]] PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing
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  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:NGS]]
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
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  • [[Category:Software]][[Category:Framework]] ...FPGA-accelerated simulation (FireSim), automated VLSI flows (Hammer), and software workload generation for bare-metal and Linux-based systems (FireMarshal). C
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  • [[Category:Software]][[Category:biology]][[Category:API]]
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  • [[Category:Software]][[Category:Geospatial]]
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  • [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or a
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  • [[Category:Software]][[Category:Library]]
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  • [[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
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  • [[Category:Software]][[Category:Phylogenetics]]
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  • [[Category:Software]][[Category:file transfer]]
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  • [[Category:Software]]
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  • [[Category:Software]][[Category:Phylogenetics]] LACHESIS: A software tool to measure the thread of life.
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  • [[Category:Software]][[Category:Phylogenetics]]
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  • [[Category:Software]][[Category:Biology]][[Category:SNP]]
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  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]][[Category:genomics]]
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  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]]
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  • [[Category:Software]][[Category:Simulation]]
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  • [[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]
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  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]
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  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
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  • [[Category:Software]][[Category:Simulation]]
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