Search results

Ugtm
[[Category:Software]][[Category:Statistics]][[Category:Modeling]]

2 KB (247 words) - 16:58, 6 June 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
BUSCO
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

5 KB (607 words) - 19:38, 27 March 2023
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
Erpin
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://rna.igmors.u-psud.fr/Software/erpin.php}}

3 KB (377 words) - 21:21, 6 December 2019
READemption
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:58, 1 June 2022
Scons
[[Category:Software]][[Category:Programming]] ...on scripts. This gives SCons many powerful capabilities not found in other software build tools.

2 KB (293 words) - 21:24, 6 December 2019
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
HyDe
[[Category:Software]][[Category:Phylogenetics]] HyDe is a software package that detects hybridization in phylogenomic data sets using phylogen

3 KB (301 words) - 20:41, 30 September 2020
Bruker2nifti
[[Category:Software]][[Category:Phylogenetics]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]

3 KB (300 words) - 15:31, 3 June 2022
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
Flye
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:20, 6 December 2019
ATLAS
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

3 KB (317 words) - 15:19, 12 August 2022
CisTEM
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://cistem.org/software}}

3 KB (349 words) - 13:35, 15 August 2022
Topd
[[Category:Software]][[Category:Phylogenetics]] ...'''Split, Quartets & Triplets''', and '''Disagree'''. Each option of this software is also complemented with a random analysis to test the null hypothesis tha

3 KB (439 words) - 21:24, 31 August 2023
OpenMPI
[[Category:Software]][[Category:Programming]][[Category:Library]] ...the best MPI library available. Open MPI offers advantages for system and software vendors, application developers and computer science researchers.

3 KB (337 words) - 19:02, 21 July 2023
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
Software Development
#REDIRECT [[Software Development Policies]]

43 bytes (4 words) - 20:46, 6 June 2022
Edyeet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 19:43, 4 November 2020
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
PBGCpp
[[Category:Software]][[Category:Phylogenetics]]

2 KB (229 words) - 20:05, 31 May 2022
Sambamba
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (299 words) - 20:33, 12 August 2022
Rust
[[Category:Software]][[Category:Programming]]

2 KB (285 words) - 21:24, 6 December 2019
MafFilter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 17:01, 24 February 2020
P7zip
[[Category:Software]][[Category:Utility]]

2 KB (254 words) - 17:34, 15 August 2022
Amuse
[[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat

2 KB (287 words) - 20:34, 15 August 2022
NextGenMap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 16:24, 19 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
BoltzTraP
[[Category:Software]][[Category:Physics]]

2 KB (279 words) - 16:19, 10 June 2022
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
SortaDate
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:42, 4 May 2020
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
GeneMark-ES
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (303 words) - 16:44, 27 May 2022
AntiSMASH
[[Category:Software]][[Category:Phylogenetics]]

3 KB (409 words) - 21:11, 6 December 2019
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
Rmats2sashimiplot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 21:56, 21 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
EMBOSS
[[Category:Software]][[Category:Biology]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.

3 KB (372 words) - 15:01, 15 August 2022
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
Radorgminer
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

3 KB (297 words) - 21:55, 6 July 2022
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
FALCON fc run cfg
[[Category:Software]]

2 KB (248 words) - 20:31, 2 August 2021
PfamScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:19, 12 August 2022
ALFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 21:33, 26 August 2020
Trim isoseq polya
[[Category:Software]]

2 KB (298 words) - 15:04, 19 August 2022
Mothur
[[Category:Software]][[Category:Biology]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (321 words) - 12:00, 19 August 2022
LACHESIS
[[Category:Software]][[Category:Phylogenetics]] LACHESIS: A software tool to measure the thread of life.

2 KB (263 words) - 21:21, 6 December 2019
Seekdeep
[[Category:Software]]

2 KB (281 words) - 17:03, 24 July 2023
Dancemapper
[[Category:Software]][[Category:Machine Learning]]

2 KB (252 words) - 22:13, 6 March 2023
MCScanX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...MCScan algorithm for detection of synteny and collinearity and extends the software by incorporating 15 utility programs for display and further analyses.

3 KB (350 words) - 21:21, 6 December 2019
Ovito
[[Category:Software]][[Category:Programming]]

3 KB (333 words) - 15:29, 1 December 2023
Deepvariant
[[Category:Software]]

3 KB (356 words) - 13:17, 16 April 2024
Gubbins
[[Category:Software]][[Category:Phylogenetics]]

3 KB (335 words) - 17:28, 15 August 2022
DeepARG
[[Category:Software]][[Category:Phylogenetics]] ...software requires external data that has been removed from the web and the software has been abandoned by its author. It is not functional.

3 KB (320 words) - 21:58, 13 February 2023
BMGE
[[Category:Software]] ...teur.fr/en/publication/bmge-block-mapping-and-gathering-with-entropy-a-new-software-for-selection-of-phylogenetic-informative-regions-from-multiple-sequence-al

3 KB (407 words) - 13:04, 15 August 2022
Bigslice
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (295 words) - 21:25, 14 September 2023
PIA2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 21:22, 6 December 2019
NanoPlot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 13:50, 19 August 2022
Seqscreen
[[Category:Software]]

2 KB (245 words) - 14:54, 15 August 2022
Category:Documentation
[[Category:Software]]

12 members (1 subcategory, 0 files) - 19:55, 22 August 2022
Helixer
[[Category:Software]]

2 KB (254 words) - 17:38, 19 April 2024
Perl
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (811 words) - 17:56, 2 January 2023
IGB
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (257 words) - 18:41, 15 August 2022
IMA3
[[Category:Software]][[Category:Molecular Dynamics]]

3 KB (317 words) - 17:02, 6 June 2022
Cactus
[[Category:Software]][[Category:Genomics]]

3 KB (298 words) - 21:30, 18 March 2024
FastUniq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 16:37, 15 August 2022
Jellyfish
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 19:27, 12 August 2022
MPBoot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (292 words) - 21:21, 6 December 2019
UMICollapse
[[Category:Software]]

2 KB (270 words) - 15:53, 16 November 2022
TaxMaps
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Genomics]]

3 KB (321 words) - 15:45, 19 August 2022
QRNA
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}

2 KB (251 words) - 17:39, 1 June 2022
REAPR
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:url|http://www.sanger.ac.uk/resources/software/reapr/#t_2}}

3 KB (320 words) - 21:35, 21 August 2022
METANNOT
[[Category:Software]]

2 KB (241 words) - 19:27, 18 August 2022
Haploflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (287 words) - 20:31, 3 January 2022
SAS
[[Category:Software]][[Category:Statistics]][[Category:Data Science]] |{{#vardefine:exe|1}} 

5 KB (775 words) - 13:48, 15 September 2023
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
UFRC environment module
[[Category:Software]]

4 KB (606 words) - 15:57, 23 August 2023
Alder
[[Category:Software]][[Category:biology]][[Category:genomics]] The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making infe

3 KB (305 words) - 12:33, 12 August 2022
RHash
[[Category:Software]][[Category:Programming]]

2 KB (249 words) - 21:49, 21 August 2022
Training
===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].

3 KB (484 words) - 13:21, 10 January 2023
Fqtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are su

3 KB (359 words) - 16:47, 15 August 2022
FLAIR
[[Category:Software]][[Category:Genomics]]

3 KB (305 words) - 18:34, 12 July 2023
Bmtagger
[[Category:Software]][[Category:Genomics‏‎]][[Category:Biology]]

2 KB (251 words) - 13:05, 15 August 2022
Category:Sequencing
Sequencing Software on HiPerGator [[Category:Software]][[Category:Research]]

146 members (0 subcategories, 0 files) - 21:43, 24 October 2022
Magicblast
[[Category:Software]]

2 KB (304 words) - 16:29, 6 October 2022
OpenSlide
[[Category:Software]][[Category:Imaging]]

2 KB (248 words) - 21:22, 6 December 2019
RelocaTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 20:32, 14 January 2020
Cantera
[[Category:Software]][[Category:Biology]][[Category:Physics]] Cantera is a suite of object-oriented software tools for problems involving

3 KB (308 words) - 13:19, 15 August 2022
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
Racon
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 21:24, 21 August 2022
UFCG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (431 words) - 17:41, 20 September 2023
Hmmer2go
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (280 words) - 18:18, 15 August 2022
BUCKy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (386 words) - 13:15, 15 August 2022
Crux
[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden

2 KB (293 words) - 18:39, 12 August 2022
SeCaPr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 21:24, 6 December 2019
FastQ-Screen
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 16:05, 16 March 2020
SpeedSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 22:29, 9 December 2020
PHYUTILITY
[[Category:Software]][[Category:biology]]

2 KB (296 words) - 20:22, 12 August 2022
PopLDdecay
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:22, 6 December 2019
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
CASM
[[Category:Software]][[Category:Physics]] CASM is an open source software package designed to perform first-principles statistical mechanical studies

4 KB (453 words) - 13:20, 15 August 2022
RNAFramework
[[Category:Software]]

2 KB (238 words) - 21:57, 21 August 2022
Gffread
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 19:02, 12 August 2022
Lingua
[[Category:Software]]

3 KB (299 words) - 20:02, 15 August 2022
GWAMA
[[Category:Software]][[Category:Phylogenetics]] ...medcentral.com/articles/10.1186/1471-2105-11-288 Magi R, Morris AP: GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics 2010, 11:288.

3 KB (322 words) - 13:33, 26 May 2020
Bamtofastq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 13:56, 8 March 2021
CDO
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

3 KB (350 words) - 19:34, 24 August 2022
NetLogo
[[Category:Software]][[Category:modeling]]

2 KB (276 words) - 21:22, 6 December 2019
Piggy
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (271 words) - 20:23, 12 August 2022
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
MANTA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (432 words) - 19:27, 10 June 2022
CellRanger-ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] ...ardefine:url|https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/overview/welcome}}

3 KB (288 words) - 18:24, 12 August 2022
Circos
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}

3 KB (409 words) - 13:35, 15 August 2022
REMORA
[[Category:Software]][[Category:Performance Analysis]][[Category:Performance Analysis]]

3 KB (330 words) - 20:39, 24 August 2022
Fit-sne
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:34, 27 May 2022
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
Rolling Upgrade from RHEL7 to RHEL8
...at Enterprise Linux version 7 (RHEL-7) to version 8 (RHEL-8). The upgraded software environment includes updates to important components including, but not lim Some programs/workflows run in the updated software environment without any modification, and some require recompilation or ada

1 KB (164 words) - 16:06, 28 September 2023
Chipyard
[[Category:Software]][[Category:Simulation]] ...FPGA-accelerated simulation (FireSim), automated VLSI flows (Hammer), and software workload generation for bare-metal and Linux-based systems (FireMarshal). C

3 KB (360 words) - 14:30, 11 October 2022
GFam
[[Category:Software]]

3 KB (339 words) - 17:06, 15 August 2022
CUDA Examples
[[Category:Software]]

12 KB (1,540 words) - 17:09, 21 December 2022
Mawk
[[Category:Software]][[Category:Language]]

2 KB (252 words) - 19:05, 6 June 2022
Fastp
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (256 words) - 15:23, 15 August 2022
SPAdes
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://cab.spbu.ru/software/spades/}}

2 KB (280 words) - 15:47, 22 August 2022
Genblastg
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (306 words) - 18:19, 5 February 2024
Novoalign
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (370 words) - 17:19, 19 August 2022
Fairseq
[[Category:Software]][[Category:Modeling]][[Category:Machine Learning]]

3 KB (296 words) - 15:18, 15 August 2022
FLEA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 22:01, 27 August 2020
Snakemake
[[Category:Software]][[Category:Workflow Automation]][[Category:Biology]] ...inition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

3 KB (385 words) - 18:51, 15 August 2022
ATAT
[[Category:Software]][[Category:Material Science]]

2 KB (247 words) - 15:18, 12 August 2022
Ambertools
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

3 KB (426 words) - 14:18, 10 July 2023
PhotoScan
[[Category:Software]][[Category:Image Processing]] Agisoft PhotoScan is a stand-alone software product that performs photogrammetric processing of digital images and gene

3 KB (316 words) - 19:57, 10 January 2023
Recycler
[[Category:Software]]

3 KB (297 words) - 14:21, 11 October 2022
Vasp
[[Category:Software]][[Category:Chemistry]] {{note|VASP is licensed software and its use is limited to those users who have been approved by the license

4 KB (538 words) - 22:38, 31 March 2024
Mistral AI
[[Category:Software]]

3 KB (316 words) - 18:50, 13 May 2024
Gmap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (450 words) - 17:11, 15 August 2022
RSeQC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (328 words) - 17:48, 10 June 2022
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
YAGO
[[Category:Software]]

4 KB (480 words) - 17:13, 15 December 2022
Phylopypruner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 18:41, 27 May 2022
YAHA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (320 words) - 20:56, 12 August 2022
DASTool
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 21:21, 6 December 2019
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
Eddy-squeeze
[[Category:Software]]

2 KB (280 words) - 14:12, 21 October 2022
Python-core
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (318 words) - 20:04, 21 August 2022
CNVnator
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (251 words) - 15:34, 10 June 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
CryoSPARC
[[Category:Software]] CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug d

3 KB (383 words) - 18:05, 10 May 2024
Zagros
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}

2 KB (289 words) - 17:54, 22 August 2022
GraphViz
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter

2 KB (276 words) - 19:03, 12 August 2022
PureCLIP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
Pyhdf
[[Category:Software]][[Category:library]] |{{#vardefine:url|http://hdfeos.org/software/pyhdf.php}}

2 KB (267 words) - 15:25, 3 June 2022
Sputnik
[[Category:Software]][[Category:Biology]]

2 KB (311 words) - 15:50, 22 August 2022
MIDAS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 17:23, 10 June 2022
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
Dragmap
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]][[Category:Biology]] Dragmap is the Dragen mapper/aligner Open Source Software.

2 KB (249 words) - 14:47, 15 August 2022
TriMetAss
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/trimetass/}}

3 KB (344 words) - 20:52, 12 August 2022
MOABS
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 19:53, 12 August 2022
WarpedLMM
[[Category:Software]][[Category:Modeling]]

2 KB (287 words) - 19:23, 1 June 2022
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
Emacs
[[Category:Software]][[Category:Programming]][[Category:Language]] |{{#vardefine:url|https://www.gnu.org/software/emacs/download.html}}

3 KB (407 words) - 14:59, 15 August 2022
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
NeEstimator
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.molecularfisherieslaboratory.com.au/neestimator-software/}}

3 KB (375 words) - 19:56, 12 August 2022
Ranger
[[Category:Software]][[Category:File Management]]

2 KB (284 words) - 13:54, 21 October 2022
Predector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 20:21, 31 May 2022
PyDeface
[[Category:Software]][[Category:Imaging]]

2 KB (237 words) - 20:34, 24 August 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
PATHd8
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (305 words) - 21:22, 6 December 2019
ASE-ANI
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (303 words) - 14:55, 12 August 2022
KisSplice
[[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It

3 KB (359 words) - 19:33, 15 August 2022
Sisl
[[Category:Software]][[Category:Physics]][[Category:Structure]]

3 KB (320 words) - 23:01, 21 August 2022
Squigglekit
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

2 KB (254 words) - 15:55, 22 August 2022
Tuxedo
[[Category:Software]][[Category:Biology]] See individual software wiki pages for more details.

598 bytes (81 words) - 20:53, 12 August 2022
PLAST
[[Category:Software]][[Category:Biology]] PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing

3 KB (320 words) - 20:23, 12 August 2022
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
PAML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/paml.html}}

3 KB (367 words) - 20:12, 12 August 2022
Guile
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/guile/}}

2 KB (293 words) - 18:08, 15 August 2022
DynamicDBG
[[Category:Software]][[Category:Phylogenetics]] ...membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and n

3 KB (312 words) - 21:20, 6 December 2019
Trilinos
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

2 KB (294 words) - 15:23, 19 August 2022
IgBLAST
[[Category:Software]][[Category:Biology]]

3 KB (338 words) - 19:06, 12 August 2022
DeepLabCut
[[Category:Software]][[Category:Phylogenetics]]

3 KB (385 words) - 21:20, 6 December 2019
Gpufit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 19:34, 26 May 2022
MetaCherchant
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (269 words) - 21:22, 6 December 2019
Circtools
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the circtools software

3 KB (433 words) - 19:03, 27 January 2023
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
Rvtests
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]] Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets.

3 KB (293 words) - 21:59, 21 August 2022
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
Nemo
[[Category:Software]][[Category:Machine Learning]]

2 KB (290 words) - 17:58, 15 August 2022
Scalablast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://omics.pnl.gov/software/ScalaBLAST.php}}

3 KB (318 words) - 20:34, 12 August 2022
Maxbin
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning proce

3 KB (364 words) - 17:56, 27 May 2022
TreeShrink
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:29, 6 December 2019
Category:Search
[[Category:Software]]

3 members (0 subcategories, 0 files) - 19:50, 22 August 2022
Cowast
Coupled Ocean-Atmosphere-Wave-Sediment Trnaspost (COWAST) is public domain software developed by the United States Geological Services. The COWAST modeling sys ...urning on the HDF5 support. The build_coawst.sh, configures and builds the software, and the binary coawstM is installed in the top-level directory.

3 KB (443 words) - 13:28, 27 March 2024
TPMcalculator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 19:45, 1 June 2022
IQ-TREE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/iqtree/}}

3 KB (395 words) - 14:51, 14 December 2022
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
RoseTTAFold
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 21:29, 20 July 2021
Datamash
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}

2 KB (247 words) - 15:01, 10 June 2022
ExaBayes
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://sco.h-its.org/exelixis/web/software/exabayes/}}

7 KB (886 words) - 21:12, 21 December 2022
RAxML-NG
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 21:34, 21 August 2022
Hacdivsel
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (280 words) - 22:20, 10 October 2022
TrackVis/DTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]] TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imag

3 KB (418 words) - 14:56, 18 October 2022
Simulia
[[Category:Software]][[Category:Simulation]][[Category:Visualization]]

2 KB (252 words) - 18:23, 1 June 2022
Poretools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:50, 21 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
BIDSCOIN
[[Category:Software]][[Category:Neuroscience]]

2 KB (263 words) - 15:20, 14 March 2023
Illumiprocessor
[[Category:Software]][[Category:Phylogenetics]]

4 KB (452 words) - 18:44, 15 August 2022
Cluster3
[[Category:Software]][[Category:Biology]][[Category:Genomics]] The open source clustering software available here implement the most commonly used clustering methods for gene

2 KB (274 words) - 18:37, 12 August 2022
Mfannot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
Schrodinger Suite
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (257 words) - 15:30, 19 August 2022
PartitionFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (402 words) - 16:57, 21 August 2022
Xwalk
[[Category:Software]]

3 KB (345 words) - 16:47, 28 February 2023
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Snpflip
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (247 words) - 00:05, 22 August 2022
Bubbleparse
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (246 words) - 14:43, 10 June 2022
SeqMap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (373 words) - 22:35, 21 August 2022
MSINGS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:21, 6 December 2019
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
GraPhlAn
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and p

2 KB (284 words) - 21:21, 6 December 2019
Forecasting
[[Category:Software]]

3 KB (308 words) - 14:41, 27 January 2023
SHEsisPlus
[[Category:Software]][[Category:Biology]][[Category:Genomics]] SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, li

3 KB (344 words) - 15:04, 19 August 2022
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Mashtree
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762]

2 KB (280 words) - 13:30, 15 August 2022
DDocent
[[Category:Software]][[Category:Phylogenetics]]

2 KB (311 words) - 14:29, 15 August 2022
METAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (426 words) - 19:27, 18 August 2022
LocusZoom
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 21:21, 6 December 2019
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
GapCloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (264 words) - 16:52, 15 August 2022
GrADS
[[Category:Software]][[Category:Geospatial]][[Category:Math]]

3 KB (334 words) - 20:26, 24 August 2022
DeepTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (360 words) - 14:35, 15 August 2022
AWSCLI
[[Category:Software]][[Category:Utility]]

2 KB (267 words) - 15:26, 12 August 2022
Minced
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (263 words) - 15:38, 10 June 2022
Coreutils
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/coreutils/}}

2 KB (301 words) - 14:09, 15 August 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
Genesum
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (277 words) - 21:21, 6 December 2019
Biodiverse
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 6 December 2019
Libunistring
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.gnu.org/software/libunistring/}}

2 KB (269 words) - 15:49, 10 June 2022
3PCLR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (307 words) - 20:35, 11 August 2022
Graphaligner
[[Category:Software]][[Category:Genomics]]

2 KB (262 words) - 21:48, 12 January 2023
DEXTRACTOR
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (441 words) - 19:20, 10 June 2022
TransDecoder
[[Category:Software]][[Category:Biology]][[Category:NGS]] A log-likelihood score similar to what is computed by the GeneID software is > 0.

3 KB (371 words) - 16:54, 22 August 2022
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
TraCeR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:40, 22 August 2022
FastStructure
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (297 words) - 18:54, 12 August 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020

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