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- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ovo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resultin3 KB (312 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]3 KB (326 words) - 14:37, 27 August 2021
- [[Category:Software]][[Category:Phylogenetics]]2 KB (279 words) - 21:29, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->4 KB (545 words) - 14:16, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ..., the existing solutions are overly complicated or rely on crappy non-free software.2 KB (279 words) - 21:20, 6 December 2019
- [[Category:Software]]21 members (0 subcategories, 0 files) - 15:38, 19 September 2014
- [[Category:Software]][[Category:Genomics]]4 KB (474 words) - 21:27, 14 September 2023
- ...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.245 bytes (44 words) - 17:34, 3 June 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:De Novo]]3 KB (313 words) - 22:42, 21 August 2022
- [[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]3 KB (323 words) - 17:02, 21 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (274 words) - 16:16, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (266 words) - 22:20, 26 August 2020
- [[Category:Software]]4 KB (507 words) - 16:54, 14 December 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (278 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa3 KB (350 words) - 20:27, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (275 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->2 KB (325 words) - 16:03, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (275 words) - 21:17, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...abases and structure templates as well as required dependencies to run the software. However, users should download the contents of the repo locally to run the3 KB (323 words) - 16:56, 27 March 2024
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (238 words) - 14:28, 15 August 2022
- [[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Astronomy]]2 KB (294 words) - 17:18, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] title={ParlAI: A Dialog Research Software Platform},3 KB (301 words) - 15:55, 21 July 2021
- ==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r533 bytes (84 words) - 15:43, 19 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]] Rosetta is the premier software suite for modeling macromolecular3 KB (302 words) - 20:37, 10 June 2022
- [[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Simulation]]2 KB (271 words) - 18:20, 1 June 2022
- [[Category:Software]][[Category:biology]][[Category:phylogenetics]]2 KB (236 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]2 KB (281 words) - 13:16, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]5 KB (607 words) - 19:38, 27 March 2023
- [[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry2 KB (246 words) - 20:23, 15 August 2022
- [[Category:Software]]2 KB (260 words) - 19:03, 12 January 2023
- [[Category:Software]]3 KB (325 words) - 21:51, 24 February 2023
- [[Category:Software]][[Category:healthcare]]2 KB (265 words) - 22:02, 10 October 2022
- [[Category:Software]][[Category:Physics]]2 KB (221 words) - 18:28, 18 August 2022
- [[Category:Software]][[Category:biology]]2 KB (276 words) - 20:08, 12 August 2022
- [[Category:Software]][[Category:Sequencing]]2 KB (249 words) - 22:12, 22 September 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (317 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (241 words) - 14:57, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (357 words) - 14:19, 14 September 2020
- [[Category:Software]][[Category:Statistics]]2 KB (264 words) - 16:54, 9 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes3 KB (400 words) - 20:50, 11 August 2022
- [[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f2 KB (289 words) - 16:24, 2 January 2020
- [[Category:Software]]13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
- [[Category:Software]][[Category:Programming]]3 KB (360 words) - 19:24, 29 November 2022
- [[Category:Software]][[Category:Data Science]]3 KB (358 words) - 16:48, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (229 words) - 20:05, 31 May 2022
- [[Category:Software]][[Category:compression]][[Category:library]] XZ Utils is free general-purpose data compression software with a high compression ratio. XZ Utils were written for POSIX-like systems2 KB (287 words) - 14:19, 27 May 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (245 words) - 17:07, 21 August 2022
- [[Category:Software]][[Category:genomics]][[Category:Biology]]2 KB (260 words) - 13:31, 15 August 2022
- [[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]2 KB (240 words) - 21:40, 21 August 2022
- [[Category:Software]][[Category:Database]]3 KB (340 words) - 19:22, 11 February 2021
- [[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat2 KB (287 words) - 20:34, 15 August 2022
- [[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent3 KB (309 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.exelixis-lab.org/web/software/pear}}3 KB (312 words) - 17:25, 21 August 2022
- [[Category:Software]][[Category:Physics]]2 KB (279 words) - 16:19, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (280 words) - 21:29, 6 December 2019
- [[Category:Software]][[Category:Chemistry]]3 KB (332 words) - 15:25, 12 August 2022
- [[Category:Software]]3 KB (375 words) - 21:32, 24 October 2022
- [[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an3 KB (318 words) - 14:46, 9 June 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (252 words) - 14:27, 17 February 2021
- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}3 KB (340 words) - 18:23, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (265 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Imaging]][[Category:Biology]][[Category:Neuroscience]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn3 KB (291 words) - 18:22, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (250 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Biology]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.3 KB (372 words) - 15:01, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->4 KB (559 words) - 17:19, 22 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (264 words) - 17:55, 22 August 2022
- [[Category:Software]][[Category:Biology]]3 KB (415 words) - 21:30, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (306 words) - 13:54, 12 August 2020
- [[Category:Software]][[Category:Phylogenetics]] A gap-closing software tool that uses error-prone long reads generated by third-generation-sequenc3 KB (321 words) - 15:35, 20 April 2021
- [[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a6 KB (790 words) - 15:25, 14 December 2022
- [[Category:Software]][[Category:Math]] Software for solving polynomial systems2 KB (248 words) - 12:48, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.sci.utah.edu/cibc-software/scirun.html}}3 KB (344 words) - 22:09, 21 August 2022
- [[Category:Software]][[Category:Machine Learning]]2 KB (252 words) - 22:13, 6 March 2023
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (319 words) - 19:28, 2 June 2022
- [[Category:Python]][[Category:Software]] ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt2 KB (243 words) - 14:51, 10 February 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (292 words) - 21:29, 6 December 2019
- [[Category:Software]]3 KB (356 words) - 13:17, 16 April 2024
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (278 words) - 21:24, 6 December 2019
- [[Category:Software]][[Category:Bioinformatics]]2 KB (283 words) - 18:55, 1 December 2023
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (295 words) - 21:25, 14 September 2023
- [[Category:Software]][[Category:Biology]][[Category:Sequencing]]3 KB (327 words) - 20:45, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (290 words) - 21:50, 27 August 2020
- [[Category:Software]]2 KB (245 words) - 14:03, 23 June 2021
- [[Category:Software]][[Category:Phylogenetics]] ...ral.com/articles/10.1186/gb-2004-5-2-r12 Kurtz S et al. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. doi 10.1186/gb-2003 KB (315 words) - 21:22, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-3 KB (361 words) - 21:01, 21 August 2022
- [[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.2 KB (283 words) - 14:11, 21 October 2022
- [[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->5 KB (811 words) - 17:56, 2 January 2023
- [[Category:Software]][[Category:Shell]]3 KB (313 words) - 19:50, 11 July 2022
- [[Category:Software]][[Category:Chemistry]]2 KB (255 words) - 13:54, 30 April 2024
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (301 words) - 16:37, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] MEGASAT is a software tool that can automatically infer genotypes from high-throughput microsatel2 KB (278 words) - 13:22, 28 August 2020
- [[Category:Software]][[Category:Phylogenetics]]3 KB (366 words) - 18:11, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (267 words) - 21:20, 6 December 2019
- [[Category:Software]][[Category:Programming]][[Category:Language]]3 KB (320 words) - 18:56, 21 August 2022
- [[Category:Software]][[Category:Chemistry]] TURBOMOLE is a licensed software. To use it, please provide your license. We will set the file permissions a3 KB (369 words) - 17:42, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}2 KB (251 words) - 17:39, 1 June 2022
- [[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/gawk/}}3 KB (356 words) - 16:55, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou5 KB (615 words) - 15:36, 14 December 2022
- [[Category:Software]][[Category:Statistics]][[Category:Data Science]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->5 KB (775 words) - 13:48, 15 September 2023
- [[Category:Software]][[Category:Math]][[Category:Astronomy]][[Category:Simulation]]2 KB (247 words) - 19:28, 18 August 2022
- [[Category:Software]][[Category:Chemistry]][[Category:Spectroscopy]]3 KB (389 words) - 23:49, 21 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po2 KB (245 words) - 19:29, 12 August 2022
- [[Category:Software]][[Category:Scheduler]] ...a fair chance of using the resources without interfering with each other. Software called a resource manager and a scheduler are required to fulfill the above5 KB (763 words) - 17:37, 5 March 2024
- ===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].3 KB (484 words) - 13:21, 10 January 2023
- [[Category:Software]][[Category:Web]][[Category:Library]]2 KB (269 words) - 17:10, 15 August 2022
- [[Category:Software]][[Category:Material Science]] AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics cor3 KB (351 words) - 15:21, 12 August 2022
- Sequencing Software on HiPerGator [[Category:Software]][[Category:Research]]146 members (0 subcategories, 0 files) - 21:43, 24 October 2022
- [[Category:Software]][[Category:Biology]][[Category:Alignment]]2 KB (271 words) - 20:25, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (344 words) - 13:56, 25 September 2020
- [[Category:Software]]2 KB (271 words) - 20:00, 5 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]]3 KB (306 words) - 17:31, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (306 words) - 16:17, 23 January 2020
- [[Category:Software]][[Category:Biology]]2 KB (254 words) - 19:29, 12 August 2022
- [[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]] |{{#vardefine:url|https://software.intel.com/en-us/intel-mpi-library}}3 KB (297 words) - 12:01, 26 August 2022
- [[Category:Software]][[Category:Audio]][[Category:Visualization]]2 KB (252 words) - 16:41, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (386 words) - 13:15, 15 August 2022
- [[Category:Software]][[Category:biology]][[Category:genomics]]2 KB (246 words) - 21:29, 6 December 2019
- [[Category:Software]][[Category:Spectroscopy]][[Category:Chemistry]] ...ingle voxel and multi-voxel (MRSI) datasets. FSL-MRS is part of FSL (FMRIB Software Library).3 KB (293 words) - 16:50, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (295 words) - 20:44, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]] SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis3 KB (294 words) - 20:55, 27 May 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (305 words) - 16:54, 15 January 2021
- [[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-3 KB (325 words) - 18:12, 21 August 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->5 KB (636 words) - 16:05, 22 December 2022
- ==Prerequisite software== Here is a list of the software you will need to be installed on your local machine to start using key-base7 KB (1,195 words) - 13:39, 26 June 2023
- [[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.4 KB (474 words) - 21:23, 6 December 2019
- [[Category:Software]][[Category:Biology]]2 KB (242 words) - 19:02, 12 August 2022
- [[Category:Software]]10 members (0 subcategories, 0 files) - 19:52, 22 August 2022
- [[Category:Software]][[Category:Biology]]3 KB (326 words) - 19:30, 12 August 2022
- [[Category:Software]][[Category:Genomics]]2 KB (269 words) - 16:40, 27 September 2022
- [[Category:Software]][[Category:Programming]]16 KB (2,392 words) - 20:14, 16 April 2024
- You may need to use the full path /blue/data/ai for software applications to find the file.2 KB (256 words) - 15:03, 28 September 2021
- [[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->3 KB (445 words) - 14:20, 15 December 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (263 words) - 21:24, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (315 words) - 17:21, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (310 words) - 21:21, 6 December 2019
- [[Category:Software]]2 KB (248 words) - 20:31, 2 August 2021
- [[Category:Software]][[Category:Documentation]]2 KB (267 words) - 16:34, 22 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (351 words) - 19:39, 23 May 2022
- ...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==4 KB (665 words) - 21:23, 14 December 2022
- [[Category:Software]][[Category:Math]]2 KB (243 words) - 19:38, 20 June 2023
- [[Category:Software]][[Category:Programming]][[Category:Geospatial]]2 KB (246 words) - 12:22, 26 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://software.broadinstitute.org/software/scripture/}}3 KB (302 words) - 20:36, 12 August 2022
- [[Category:Software]][[Category:Modeling]] ...eatures for reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license. If you use this project for your res2 KB (290 words) - 16:53, 6 June 2022
- [[Category:Software]][[Category:Machine Learning]] PATRIC is an integration of different types of data and software tools that support research on bacterial pathogens. The typical biologist s3 KB (390 words) - 16:04, 6 June 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (285 words) - 21:15, 6 December 2019
- [[Category:Software]][[Category:Workflow Automation]]3 KB (348 words) - 14:17, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (325 words) - 21:24, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->3 KB (370 words) - 17:19, 19 August 2022
- [[Category:Software]][[Category:utility]]2 KB (239 words) - 19:16, 3 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (241 words) - 20:42, 7 February 2024
- [[Category:Software]][[Category:Material Science]]2 KB (247 words) - 15:18, 12 August 2022
- [[Category:Software]][[Category:Data Mining]]2 KB (288 words) - 16:47, 17 October 2023
- [[Category:Software]][[Category:Phylogenetics]]2 KB (242 words) - 18:54, 27 May 2022
- [[Category:Software]][[Category:Phylogenetics]] Genome-wide Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequen2 KB (274 words) - 21:21, 6 December 2019
- [[Category:Software]]2 KB (259 words) - 18:08, 15 August 2022
- [[Category:Software]]22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->3 KB (450 words) - 17:11, 15 August 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]] ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quanti3 KB (371 words) - 19:35, 21 August 2022
- [[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.3 KB (337 words) - 15:25, 19 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (263 words) - 18:41, 27 May 2022
- [[Category:Software]][[Category:Library]][[Category:Programming]][[Category:Compiler]] LAPACK is a standard software library for numerical linear algebra. It provides routines for solving syst2 KB (286 words) - 17:43, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (294 words) - 19:38, 21 August 2022
- [[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl3 KB (372 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]3 KB (388 words) - 18:54, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (241 words) - 19:43, 1 June 2022
- [[Category:Software]][[Category:Language]][[Category:Programming]]3 KB (318 words) - 20:04, 21 August 2022
- [[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/pda/}}3 KB (294 words) - 21:23, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (312 words) - 18:54, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}2 KB (289 words) - 17:54, 22 August 2022
- [[Category:Software]] RNAlysis is a Python-based software for analyzing RNA sequencing data. RNAlysis allows you to build customized5 KB (648 words) - 16:12, 25 April 2023
- [[Category:Software]][[Category:Math]]2 KB (279 words) - 12:27, 19 August 2022
- [[Category:Software]][[Category:Genomics]][[Category:Biology]]3 KB (375 words) - 20:54, 18 May 2023
- [[Category:Software]][[Category:Biology]][[Category:Alignment]]2 KB (292 words) - 18:36, 12 August 2022
- [[Category:Software]][[Category:Biology]] If you like our software and have used it in your research project, please cite the following paper3 KB (403 words) - 23:35, 6 February 2023
- [[Category:Software]][[Category:Biology]]2 KB (311 words) - 15:50, 22 August 2022
- [[Category:Software]][[Category:Biology]][[Category:programming]][[Category:library]][[Category3 KB (306 words) - 14:25, 19 August 2022
- * By using the software, you agree to7 KB (1,100 words) - 17:42, 5 March 2024
- [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/trimetass/}}3 KB (344 words) - 20:52, 12 August 2022
- [[Category:Software]]8 members (0 subcategories, 0 files) - 17:22, 3 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (305 words) - 13:11, 21 October 2020
- [[Category:Software]][[Category:Biology]]3 KB (378 words) - 14:53, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]2 KB (247 words) - 15:07, 10 June 2022
- [[Category:Software]][[Category:Programming]]3 KB (350 words) - 18:56, 21 August 2022
- [[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->2 KB (248 words) - 13:11, 6 June 2022
- [[Category:Software]][[Category:biology]][[Category:phylogenetics]]2 KB (255 words) - 21:21, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]2 KB (285 words) - 20:56, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (246 words) - 20:21, 31 May 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (294 words) - 21:06, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]2 KB (275 words) - 15:00, 30 March 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]3 KB (344 words) - 18:28, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (382 words) - 14:27, 23 April 2020
- [[Category:Software]]3 KB (302 words) - 18:59, 1 February 2021
- [[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It3 KB (359 words) - 19:33, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (258 words) - 21:10, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (328 words) - 18:09, 31 May 2022
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}2 KB (263 words) - 13:25, 15 August 2022
- [[Category:Software]][[Category:Biology]] See individual software wiki pages for more details.598 bytes (81 words) - 20:53, 12 August 2022
- [[Category:Software]][[Category:Compiler]]3 KB (353 words) - 20:44, 15 August 2022
- [[Category:Software]][[Category:Sequencing]][[Category:Biology]]2 KB (262 words) - 20:12, 9 May 2022
- [[Category:Software]][[Category:Statistics]]3 KB (461 words) - 19:51, 18 July 2023
- [[Category:Software]][[Category:Data Science]][[Category:Biology]]2 KB (248 words) - 17:56, 19 August 2022
- [[Category:Software]]2 KB (284 words) - 20:40, 12 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}3 KB (409 words) - 13:35, 15 August 2022
- [[Category:Software]] |{{#vardefine:url|https://www.chaos.com/3d-rendering-software}}3 KB (341 words) - 16:46, 6 April 2023
- [[Category:Software]][[Category:Biology]][[Category:NGS]]2 KB (289 words) - 12:41, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (319 words) - 21:24, 6 December 2019
- [[Category:Software]][[Category:Phylogenetics]]2 KB (234 words) - 19:34, 26 May 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (299 words) - 21:20, 6 December 2019
- [[Category:Software]]16 members (0 subcategories, 0 files) - 15:38, 19 August 2022
- [[Category:Software]][[Category:Programming]][[Category:Search]]2 KB (262 words) - 12:11, 26 August 2022
- ...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster3 KB (493 words) - 21:42, 2 November 2011
- [[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category ...th Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.3 KB (328 words) - 15:12, 27 May 2022
File:Software.png software icon for main menu...possibly(500 × 500 (15 KB)) - 13:53, 24 June 2022- [[Category:Software]][[Category:Biology]][[Category:NGS]] ...gram to go from a de novo transcriptome assembly to gene-level counts. Our software takes a set of reads that have been multi-mapped to the transcriptome (wher3 KB (309 words) - 17:09, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (342 words) - 22:21, 26 August 2020
- [[Category:Software]] This software requires GUI. See more: [https://help.rc.ufl.edu/doc/GUI_Programs GUI Progr3 KB (369 words) - 15:57, 13 September 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (269 words) - 17:12, 31 May 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]2 KB (281 words) - 19:18, 15 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (241 words) - 18:28, 1 June 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (293 words) - 19:45, 1 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (247 words) - 21:15, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]2 KB (265 words) - 19:07, 1 April 2024
- [[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}2 KB (247 words) - 15:01, 10 June 2022
- [[Category:Software]][[Category:Phylogenetics]]3 KB (322 words) - 22:16, 27 August 2020
- [[Category:Software]][[Category:Phylogenetics]] ...GPU. An example job script for a run with the test data included with the software is shown below.6 KB (832 words) - 15:38, 2 February 2024
- [[Category:Software]][[Category:Phylogenetics]] GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and3 KB (299 words) - 15:08, 12 April 2022
- [[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->3 KB (360 words) - 16:36, 21 August 2022
- [[Category:Software]]2 KB (251 words) - 20:38, 12 August 2022
- [[Category:Software]][[Category:Simulation]][[Category:Visualization]]2 KB (252 words) - 18:23, 1 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (242 words) - 15:08, 15 August 2022
- [[Category:NGS]][[Category:Software]]28 members (0 subcategories, 0 files) - 15:28, 23 August 2022
- [[Category:Software]][[Category:Phylogenetics]]4 KB (452 words) - 18:44, 15 August 2022
- [[Category:Software]]3 KB (429 words) - 20:16, 3 June 2022
- [[Category:Software]][[Category:Phylogenetics]] The software requires users to create the BP_DATA, tmp, and BP_LOG directories in your w3 KB (410 words) - 15:40, 10 December 2021
- [[Category:Software]][[Category:Imaging]] This software is installed in a container.2 KB (281 words) - 14:34, 15 August 2022
- [[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]2 KB (253 words) - 17:59, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]3 KB (402 words) - 16:57, 21 August 2022
- [[Category:Software]][[Category:Modeling]]3 KB (439 words) - 21:23, 6 December 2019
- [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]3 KB (309 words) - 17:44, 19 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]2 KB (246 words) - 14:43, 10 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The3 KB (326 words) - 17:36, 10 June 2022
- [[Category:Software]][[Category:Utility]]3 KB (326 words) - 14:05, 17 September 2020
- [[Category:Software]][[Category:Phylogenetics]]2 KB (287 words) - 17:22, 9 June 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|https://www.genetics.ucla.edu/software/admixture/index.html}}3 KB (366 words) - 20:51, 11 August 2022
- [[Category:Software]][[Category:Phylogenetics]] ...hat is specialized for high effiency when counting k-mers for large k. The software is decribed here.3 KB (320 words) - 14:34, 3 January 2020
- [[Category:Software]]3 KB (308 words) - 14:41, 27 January 2023
- [[Category:Software]][[Category:Annotation]][[Category:Biology]]2 KB (270 words) - 19:02, 10 October 2022
- [[Category:Software]][[Category:Biology]][[Category:Genomics]]3 KB (378 words) - 18:39, 12 August 2022
- [[Category:Software]][[Category:Phylogenetics]]2 KB (311 words) - 14:29, 15 August 2022