Search results

Cx oracle
[[Category:Software]][[Category:Database]][[Category:Utility]]

2 KB (269 words) - 14:22, 15 August 2022
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
Ksnp
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Variant Calling]] kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds

3 KB (327 words) - 12:56, 15 August 2022
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
OMindel
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:51, 31 May 2022
ALLMAPS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 21:11, 6 December 2019
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
Mdanalysis
[[Category:Software]][[Category:Biology]][[Category:Physics]]

3 KB (387 words) - 19:49, 12 August 2022
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
TEToolkit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (259 words) - 20:46, 12 August 2022
MOABS
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 19:53, 12 August 2022
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
DS9
[[Category:Software]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (322 words) - 13:07, 6 June 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
Category:Compiler
[[Category:Software]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For

24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
Finder
[[Category:Software]] independent software that generatess gene annotations in GTF format. finder

3 KB (345 words) - 16:42, 15 August 2022
Groovy
[[Category:Software]][[Category:Programming]]

2 KB (281 words) - 21:21, 6 December 2019
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
Tbb
[[Category:Software]][[Category:library]]

2 KB (259 words) - 21:29, 6 December 2019
Github-cli
[[Category:Software]]

2 KB (266 words) - 20:06, 19 December 2023
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
Freecad
[[Category:Software]][[Category:Modeling]]

2 KB (241 words) - 00:16, 15 February 2023
C-wap
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

2 KB (281 words) - 13:16, 15 August 2022
SimSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (283 words) - 22:59, 21 August 2022
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
BEAGLE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou

5 KB (615 words) - 15:36, 14 December 2022
MECAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 18:29, 18 August 2022
MSMBuilder
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

2 KB (288 words) - 16:38, 10 June 2022
PySLURM
[[Category:Software]][[Category:Scheduler Apps]]

2 KB (235 words) - 18:29, 11 November 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
Resolve
[[Category:Software]] ...tion, visual effects, motion graphics and audio post production all in one software tool.

2 KB (261 words) - 13:59, 25 July 2023
RMATS turbo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (289 words) - 19:26, 2 June 2022
Dynare
[[Category:Software]][[Category:Math]] Dynare is a software platform for handling a wide class of economic models, in particular dynami

3 KB (382 words) - 21:20, 6 December 2019
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
QIIME2
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

3 KB (435 words) - 15:15, 19 August 2022
Pbcore
[[Category:Software]][[Category:biology]]

2 KB (244 words) - 20:16, 12 August 2022
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
HDF5
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:exe|}} 

2 KB (326 words) - 18:16, 15 August 2022
Giggle
[[Category:Software]]

2 KB (268 words) - 20:58, 24 February 2023
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
Fastai
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 18:03, 13 November 2020
GROMACS
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

4 KB (556 words) - 19:16, 5 January 2023
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
Category:Phylogenetics
[[Category:Biology]][[Category:Software]][[Category:Research]] Phylogenetics software and documentation

766 members (0 subcategories, 0 files) - 21:43, 24 October 2022
IsPcr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:22, 6 December 2019
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
Category:Assembly
[[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.

20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
WhatsHap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b

2 KB (269 words) - 21:29, 6 December 2019
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
LongQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 14:52, 12 October 2021
LASTZ
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (284 words) - 19:30, 12 August 2022
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
METAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (426 words) - 19:27, 18 August 2022
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
FAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:21, 6 December 2019
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
FastQC
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (382 words) - 15:25, 15 August 2022
Vcflib
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (390 words) - 20:54, 12 August 2022
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
Funannotate
[[Category:Software]][[Category:Phylogenetics]] ...t has evolved over time to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submi

3 KB (375 words) - 16:51, 15 August 2022
SSPACE
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 20:44, 12 August 2022
JVARKIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:21, 6 December 2019
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Stacks
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. St

4 KB (658 words) - 21:20, 2 January 2023
SMS
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 20:41, 12 August 2022
Eukulele
[[Category:Software]][[Category:Alignment]][[Category:Annotation]][[Category:Biology]][[Categor The software includes four major features:

4 KB (453 words) - 22:12, 8 March 2024
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
Pypaftol
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

3 KB (307 words) - 14:11, 9 April 2024
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
PfamScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:19, 12 August 2022
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
PennCNV
[[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.

4 KB (474 words) - 21:23, 6 December 2019
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
LibMesh
[[Category:Software]][[Category:Math]]

2 KB (281 words) - 19:51, 15 August 2022
DOT
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] DOT is a software package for docking macromolecules, including proteins, DNA, and RNA. DOT p

3 KB (340 words) - 14:46, 15 August 2022
FGTPartitioner
[[Category:Software]] ...stry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030

2 KB (266 words) - 19:05, 28 June 2023
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
MTG2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022
BAM-matcher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 21:07, 6 December 2019
Minipolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (338 words) - 14:53, 9 December 2019
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
Unicycler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:29, 6 December 2019
Shustring
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (237 words) - 14:55, 10 June 2022
Bgenix
...ten in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the

2 KB (291 words) - 12:52, 15 August 2022
Email storage alert
[[Category:Software]]

2 KB (231 words) - 21:37, 5 July 2023
FDSTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:34, 27 August 2020
Tiff
[[Category:Software]][[Category:Imaging]] This software provides support for the Tag Image File Format (TIFF), a widely used format

2 KB (246 words) - 19:19, 1 June 2022
AltAnalyze
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or a

3 KB (398 words) - 19:14, 10 June 2022
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
Falco
[[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.

2 KB (283 words) - 14:11, 21 October 2022
MKL
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Programming]][[Category:Co |{{#vardefine:url|https://software.intel.com/en-us/mkl}}

3 KB (378 words) - 19:14, 24 August 2022
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
MultiQC
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (285 words) - 19:54, 12 August 2022
IsoSeq3
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (295 words) - 20:10, 24 August 2022
Espresso SLURM
[[Category:Software]]

1 KB (144 words) - 21:20, 8 November 2022
Model Card Toolkit
[[Category:Software]]

3 KB (333 words) - 15:31, 10 July 2023
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
Ont fast5 api
[[Category:Software]][[Category:Phylogenetics]] Oxford Nanopore Technologies fast5 API software

2 KB (238 words) - 17:49, 19 August 2022
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
Draft:UFRC Help and Documentation Tetris
'''Software and Reference Data''' | style="width: 7%; vertical-align: middle" | [[Image:Software.png|right|frameless|upright=0.3]]

6 KB (733 words) - 14:05, 30 March 2023
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
MEME
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (292 words) - 19:50, 12 August 2022
Nuke
[[Category:Software]]

2 KB (277 words) - 13:47, 19 July 2023
Reptile
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Math]] |{{#vardefine:exe|1}} 

3 KB (458 words) - 21:46, 21 August 2022
MetaSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (277 words) - 21:21, 6 December 2019
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
Cammiq
[[Category:Software]][[Category:Biology]][[Category:Genomics]] CAMMiQ is a software tool for microbial identification and quantification.

2 KB (281 words) - 21:39, 14 June 2023
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
Crux
[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden

2 KB (293 words) - 18:39, 12 August 2022
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
Ska2
[[Category:Software]][[Category:Alignment]][[Category:Biology]][[Category:Genomics]]

3 KB (365 words) - 20:51, 29 June 2023
Badread
[[Category:Software]][[Category:Phylogenetics]] ...RR. Badread: simulation of error-prone long reads. Journal of Open Source Software. 2019;4(36):1316. doi:10.21105/joss.01316.]

3 KB (363 words) - 20:47, 24 September 2020
Java
[[Category:Software]][[Category:Programming]]

3 KB (448 words) - 19:10, 15 August 2022
TRIPLEC
[[Category:Software]][[Category:biology]] |{{#vardefine:url|http://www.cibiv.at/software/triplec/}}

3 KB (308 words) - 20:52, 12 August 2022
Apptests
[[Category:Software]]

3 KB (331 words) - 20:52, 1 November 2023
EggNOG-mapper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 19:29, 6 December 2021
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
Lingua
[[Category:Software]]

3 KB (299 words) - 20:02, 15 August 2022
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
NMRPipe
[[Category:Software]][[Category:Biology]] NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An

3 KB (325 words) - 15:55, 23 August 2022
Go
[[Category:Software]][[Category:Language]]

3 KB (305 words) - 19:05, 6 June 2022
Grace
[[Category:Software]][[Category:Statistics]][[Category:Graphics]] |{{#vardefine:exe|1}} 

2 KB (256 words) - 17:17, 15 August 2022
SCRATCH-1D
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (381 words) - 20:35, 12 August 2022
Siesta
[[Category:Software]][[Category:Chemistry]]

3 KB (427 words) - 13:54, 6 June 2022
Pyfaidx
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (340 words) - 19:58, 21 August 2022
Llama
[[Category:Software]]

2 KB (298 words) - 03:47, 10 May 2024
MITObim
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 15:20, 22 April 2020
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
CellRanger-DNA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}

2 KB (263 words) - 13:25, 15 August 2022
Spacemake
[[Category:Software]][[Category:Sequencing]]

2 KB (249 words) - 22:12, 22 September 2022
SOAPaligner
[[Category:Software]][[Category:Phylogenetics]] ...(Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast

3 KB (334 words) - 21:24, 6 December 2019
CrossMap
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (335 words) - 17:50, 10 June 2022
RGIS
[[Category:Software]][[Category:Geospatial]] ...software. RiverGIS is not intended to replace or compete with existing GIS software. It was designed to complement existing GIS packages (like ARC/INFO) and pr

3 KB (370 words) - 20:27, 24 August 2022
AGAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (346 words) - 22:01, 15 July 2020
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
R-index
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:24, 6 December 2019
ROOT
[[Category:Software]][[Category:Data Science]]

3 KB (358 words) - 16:48, 21 August 2022
GNU Compiler Collection
[[Category:Software]][[Category:Compiler]] ...for the GNU operating system. The GNU system was developed to be 100% free software, free in the sense that it respects the user's freedom.

2 KB (298 words) - 20:44, 15 August 2022
Picard-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

6 KB (882 words) - 15:25, 27 January 2023
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
Quickmerge
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 21:24, 6 December 2019
PEAR
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.exelixis-lab.org/web/software/pear}}

3 KB (312 words) - 17:25, 21 August 2022
HPG Computation
...open a support ticket to request RC to install the software in one of our software environments if it will be widely used. ==Using installed software==

5 KB (760 words) - 17:35, 22 April 2024
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
BEAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|1}} 

4 KB (553 words) - 14:27, 27 June 2023
CryptoMiniSat
[[Category:Software]][[Category:Math]]

3 KB (325 words) - 14:13, 15 August 2022
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
Category:Language
[[Category:Software]]

22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
Camino
[[Category:Software]][[Category:Imaging]][[Category:Biology]][[Category:Neuroscience]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn

3 KB (291 words) - 18:22, 12 August 2022
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
BIRDS
[[Category:Software]][[Category:Imaging]][[Category:Workflow Automation]][[Category:Utility]]

2 KB (263 words) - 13:01, 15 August 2022
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
RStudio Server
[[Category:Software]][[Category:Statistics]]

2 KB (282 words) - 15:56, 22 February 2023
RAPSearch
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (304 words) - 21:24, 6 December 2019
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
DRAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:20, 6 December 2019
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
SPARTA+
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:url|http://spin.niddk.nih.gov/bax/software/SPARTA+/}}

2 KB (262 words) - 13:55, 6 June 2022
Category:Annotation
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:54, 22 August 2022
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
FastPlast
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 20:23, 23 May 2022
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
PyDeface
[[Category:Software]][[Category:Imaging]]

2 KB (237 words) - 20:34, 24 August 2022
NextDenovo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 18:03, 10 May 2021
Centrifuge
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (355 words) - 21:05, 6 December 2019
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Scoary
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 22:10, 21 August 2022
Taxtastic
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (263 words) - 15:45, 19 August 2022
Pbpigeon
[[Category:Software]][Category:Biology]]

2 KB (275 words) - 22:37, 21 January 2024
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
PLAST
[[Category:Software]][[Category:Biology]] PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing

3 KB (320 words) - 20:23, 12 August 2022
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
Category:RNA-Seq
[[Category:NGS]][[Category:Software]]

28 members (0 subcategories, 0 files) - 15:28, 23 August 2022
PHASE
[[Category:Software]][[Category:Phylogenetics]] In all cases, please specify the version of the software used, and any deviations from the default options.

2 KB (276 words) - 18:09, 21 August 2022
TransDecoder
[[Category:Software]][[Category:Biology]][[Category:NGS]] A log-likelihood score similar to what is computed by the GeneID software is > 0.

3 KB (371 words) - 16:54, 22 August 2022
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
SURVIVOR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 21:24, 6 December 2019
SnpEff
[[Category:Software]][[Category:Biology]][[Category:Annotation]]

4 KB (562 words) - 15:19, 5 January 2023
Astropy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 15:18, 12 August 2022
Gaussian
[[Category:Software]][[Category:Chemistry]] Please note that Gaussian is restricted software. Users who intend to use it must sign the '''Gaussian Confidentiality Agree

6 KB (918 words) - 14:39, 8 March 2023
PyRosetta
[[Category:Software]][[Category:biology]][[Category:structure]][[Category:modeling]]

2 KB (267 words) - 21:24, 6 December 2019
Knime
[[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an

3 KB (318 words) - 14:46, 9 June 2023

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