Difference between revisions of "Installed Software"

From UFRC
Jump to navigation Jump to search
Line 530: Line 530:
 
| <span id="P"></span> [[PALES]] || 122 || [http://spin.niddk.nih.gov/bax/software/PALES/index.html] || Physics
 
| <span id="P"></span> [[PALES]] || 122 || [http://spin.niddk.nih.gov/bax/software/PALES/index.html] || Physics
 
|-
 
|-
−
| [[PAML]] || 4.7, 4.8 || [http://abacus.gene.ucl.ac.uk/software/paml.html]||Biology, Phylogenetics
+
| [[PAML]] || 4.7, 4.8a || [http://abacus.gene.ucl.ac.uk/software/paml.html]||Biology, Phylogenetics
 
|-
 
|-
 
| [[ParaView]] || 4.1.0 || [http://www.paraview.org]||Data Analysis
 
| [[ParaView]] || 4.1.0 || [http://www.paraview.org]||Data Analysis

Revision as of 05:02, 8 January 2015

Installed Software List

Last updated 2015-01-08.

Note: Click on the icons to the right of the column headings to sort the table.

0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Name Version [1] Website Category
AbInit 6.12.3 [1] Ab Initio Quantum Chemistry, Density Functional Theory
Abyss 1.3.4, 1.3.7 [2] Biology, NGS
ALLPATHS-LG 42316, 44837 [3] Biology, NGS
AFNI 2011_12_21_1014 [4] Biology, Statistics, Imaging, Neurology
Amber 11, 12, 14 [5] Simulation, chemistry
AMOS 3.1.0 [6] Biology, Genomics, NGS
ANNOVAR 20120621,20121023,20130321 [7] Biology, Genomics
Atlas 3.10.1, 3.11.17 [8] Library, Math
Amuse 6.0 [9] Astrophysics
Affymetrix Power Tools 1.15.0 [10] Biology, Genomics, Microarray
ARC 20140312 [11] Biology, NGS
AtomEye 3 [12] Material Science
ATRAM 20140624 [13] Biology, NGS
Augustus 2.6 [14] Biology, NGS
BamBam 1.0 [15] Biology, NGS
Bamstats 20140602 [16] Biology, NGS
Bamtools 2.1.1 [17] Biology, NGS
BamUtil 1.0.2 [18] Biology, NGS
BayesRate 1.3.43 [19] Biology, Phylogenetics
Bbcp 12.08.17.00.0 [20] Network file transfer
Bcftools 20140618 [21] Biology, Genomics, NGS
BEAGLE 3.2.2 [22] Biology, Genetics, Genotyping
BEAST 1.7.5, 1.8.1, 2.1.3 [23] Biology, Phylogenetics
BEDTools 2.16.2, 2.17.0 [24] Biology, NGS
BEST 2.3 [25] Biology, Phylogenetics
BETA 1.0.5 [26] Biology, NGS
BFAST 0.7.0 [27] Biology, NGS
Bismark 0.7.4, 0.7.7, 0.13.0 [28] Biology, NGS, Methylation
Bioconductor Latest [29] Biology, R, Statistics
BioPerl 1.006901 [30] Biology, Perl
PHYLDOG 20130418 [31] Biology, Genomics, Phylogenetics
Plink 1.07 [32] Biology, GWAS
BioPython 1.59 [33] Biology, Python
BLASR 20130815 [34] Biology, NGS
NCBI BLAST 2.2.27, 2.2.28, 2.2.29 [35] Biology, Sequence alignment
Blast2go 2.5.0-20120705 [36] Biology, Annotation
BLAT 20120524 [37] Biology, Sequence alignment
Blender 2.63 [38] Graphics
Boost 1.49.0, 1.53.0, 1.54.0 [39] C++, Library
Bowtie 0.12.9, 1.0.0 [40] Biology, NGS
Bowtie2 2.1.0, 2.2.2, 2.2.3 [41] Biology, NGS
BPP 2.2, 1.9.0 [42] Biology, Phylogenetics
BRANCH 1.8.1 [43] Biology, NGS, Mapping
Bsmap 2.74, 2.87 [44] Biology, NGS, Methylation
Bwa 0.6.1, 0.7.9a, 0.7.10 [45] Biology, NGS
Camino 20140723 [46] Biology, Neuroscience, Imaging
CAP3 20120705 [47] Biology, sequence assembly
CASAVA 1.8.2 [48] Biology, NGS
CD-HIT 4.6 [49] Biology, Genomics
CDO 1.6.1 [50] Climate
CEAS 1.0.2 [51] Biology, Genomics
CellProfiler 2.0 [52] Biology, Image Analysis
CGATools 1.6.0.42 [53] Biology, NGS
Charmm 36a3 [54] Simulation, Chemistry
Chartdirector 5.1.0 [55] Graphics
Chimera 1.7 [56] Biology, Modeling
ChromEvol 2.0 [57] Biology, Phylogenetics
CIMS 4.1.2 [58] Biology, Genomics
Circos 0.63-pre11 [59] Biology, Visualization
CisGenome 2.0 [60] Biology, Genomics, Peak Calling
Clann 3.2.3 [61] Biology, Phylogenetics
CLHEP 2.2.0.1 [62] High Energy Physics
ClonalFrame 1.1, 1.2 [63] Biology, Genomics, NGS
ClustalW 2.1 [64] Biology, Genomics
Cluster3 1.52 [65]] Biology, Genomics
Clview 20130402 [66] Biology, Genomics
CMake 2.8.8, 2.9.12.1, 3.1.0 [67] Programming, Build System
CNVSeq 20110715 [68] Biology, NGS
Coevol 1.3c, 1.4b [69] Biology, Phylogenetics
CoMap 1.4.1 [70] Biology, Genomics
CONCOCT 0.3.1 [71] Biology, Genomics
Consed 23.0 [72] Biology, Genomics
covNMR 2014 [73] Biochemistry
CUDA 4.2, 5.5 [74] Programming, Graphics
Cufflinks 1.3.0, 2.0.2, 2.2.1 [75] Biology, NGS
Cutadapt 1.1 [76] Biology, NGS
DAKOTA 5.4.0 [77] Computational Science
DaPars 0.9.0 [78] Biology, NGS, RNA-Seq
DCMTK 3.6.0 [79] Biology, Neuroscience, Imaging
DDSCAT 7.3.0 [80] Astrophysics
DDT 4.1.0, 4.2.1 [81] Software
Delft3D 3621 [82] Hydrodynamics, Physics
Desmond 3.0.3.1 [83] Simulation, Biology, Chemistry
Dalton 2011 [84] Quantum Chemistry
DiffReps 1.55.4 [85] Biology, NGS, ChIP-Seq
Dindel 1.01 [86] Biology, NGS
DIYABC 1.0.4.43b, 2.0.3 [87] Biology, Genomics
Dlpoly 4.03.4 [88] Simulation, Biology, Chemistry
DNA Clust 3.0 [89] Biology, Genomics
Dock 6.5, 6.6 [90] Chemistry, ligand binding prediction
DOT 2.0 [91] Biology, Bioinformatics, Docking
Doxygen 1.8.3.1 [92] Programming, Documentation
DSSP 2.2.1 [93] Biology, Molecular Dynamics
DTI-TK 2.3.1 [94] Biology, Neurology, Imaging
E EA-Utils 1.1.2.537 [95] Biology, NGS
ECTools 20140311, 20141201 [96] Biology, Sequencing, Bioinformatics
EEGLAB 12.0.2.1b [97] Biology, Matlab
EIGENSOFT 4.2, 5.0.1 [98] Biology, Population
emboss 6.5.7 [99] Biology, multi-tool suite
EMIRGE 20130727 [100] Biology, NGS
eQTLA 1.1 [101] Biology, Genomics
Eqtlbma 1.2.2 [102] Biology, Genotyping
Espresso 5.0.1 [103] Modeling, Physics
ESPRIT 201211 [104] Biology, NGS, Metagenomics
ETE2 2.1 [105] Biology, Phylogenetics
Eval 2.2.8 [106] Biology, Genomics, GUI
ExaBayes 1.2.1 [107] Biology, Phylogenetics
ExaML 1.0.3, 1.0.5, 1.0.12 [108] Biology, Phylogenetics
ExomeCNV 1.4 [109] Biology, NGS, Genomics
Exonerate 2.2.0 [110] Biology, Genomics
eXpress 1.3.1 [111] Biology, NGS
FAR 2.15 [112] Biology, Genomics
FASTA 34.26.5, 36.3.6d [113] Biology, Genomics
FastML 3.0 [114] Biology, Phylogenetics, ML
FastQC 0.9.6, 0.10.1 [115] Biology, NGS
FastTree 2.1.7 [116] Biology, Phylogenetics
Fastx_toolkit 0.0.13.2 [117] Biology, NGS
fcGENE 1.0.7 [118] Biology, Genomics, SNP
Ferret 6.82 [119] Oceanography, Meteorology
FFmpeg 2.1.3 [120] Multimedia, audio, video
FFTW 3.3.2, 3.3.3 [121] Math, Library, C++
FLASH 1.2.10 [122] Biology, Genomics, NGS
Flexbar 2.3 [123] Biology, Genomics, NGS
Fluent 14.5.7, 15.0 [124] Simulation, Fluid Dynamics
FragGeneScan 1.16 [125] Biology, NGS, Genomics
FreeBayes 0.9.6, 0.9.15 [126] Biology, NGS, SNP Calling
Freesurfer 5.2.0 [127] Biology, Neurology, Imaging
FSL 5.0.2.2 [128] Biology, Neurology, Imaging
G GapFiller 1.11 [129] Biology, NGS
Garli 2.0, 2.01 [130] Biology, Phylogenetics
GASVPro 201310 [131] Biology, NGS, Genomics
GATE 7.0 [132] Data Analysis
GATK 1.6.9, 2.7.4, 3.1.1 [133] Biology, NGS
Gaussian E01, G03, G09-A.02, G09-C.01 [134] Modeling, Computational Chemistry
Geant4 4.10 [135] Physics
GEM 20130406 [136] Biology, NGS
GEMINI 4.6.6a [137] Biology, Genomics, Genetics
GenBank Tools 20140130 [138] BIology< Genomics
GeneMark 2012.04 [139] Biology, Genomics, Metagenomics
Genewise 2.2.0 [140] Biology, Genomics, Annotation
GenomicTools 2.7.0 [141] Biology, NGS
Git 1.8.2.1 [142] Development, Revision Control
GLPK 4.55 [143] Library, Linear Programming
Gmap 20130618, 20130720, 20140530 [144] Biology, Genomics
GNU 4.4.6, 4.7.2 [145] Compilers, Programming
GnuPlot 4.6.0 [146] Graphics, Plotting, Programming
Grace 5.1.22 [147] Graphics, plotting, 2D
GrADS 2.0.1 [148] Earth Science
GraphViz 2.38.0 [149] Graphics, plotting, visualization
Gromacs 4.5.5, 4.6.5 [150] Chemistry, Modeling, Simulation
GSNP 1.0 [151] Biology, Bioinformatics, NGS
GSL 1.15 [152] Library, Math, C++, C
GULP 4.0 [153] Material Science
HaMStR v8b [154] Biology, Genomics
HapCompass 0.7.7 [155] Biology, NGS, Genomics
Hapsembler 2.21 [156] Biology, Genomics, NGS
HapTree 1.0 [157] Biology, Genomics, NGS
HDF5 1.8.9, 1.8.12 [158] Library, Data
HMMER3 3.0 [159] Biology, Genomics
HMMSplicer 0.9.5 [160] Biology, Genomics
HOMER 4.2 [161] Biology, Genomics
HTMLDoc 1.2.82 [162] Documentation, PDF, HTML
HTSeq 0.5.3p3, 0.6.1p1 [163] Biology, NGS
HyPhy 2.1.2.28 [164] Biology, Phylogenetics
Hypre 1.10.0b, 2.8.0b [165] Library, Math, Physics
IDBA-UD 1.0.9, 1.1.0 [166] Biology, NGS
iGTP 1.1 [167] Biology, Bioinformatics, Phylogenetics
IM and IMa 20091217 [168] Biology, Population
IMa2 20120827 [169] Biology, Population
ImageJ 1.48 [170] Image manipulation
ImageMagick 6.8.8-9 [171] Image manipulation
Intel Compilers 11.1, 2012 [172] Programming, Compilers
IOAPI 3.1 [173] Meteorology
Iprscan 4.8 [174] Biology, Genomics
ITK 4.3.1 [175] Biology, Genomics
ITK-SNAP 3.0.0 [176] Biology, Neuroscience, Imaging
JAGS 3.3.0 [177] Statistics
Java 1.6.0_31, 1.7.0_02 [178] Java Development Kit
Jellyfish 2.1.1 [179] Biology, NGS
JModelTest 2.1.1. [180] Biology, Phylogenetics, Genomics
KaKs 1.2 [181] Biology, Phylogenetics
Kent 20120524 [182] Biology, NGS
Khmer 1.1 [183] Biology, NGS
KING 1.4 [184] Biology, Genomics
Kmer 1934 [185] Biology, NGS
KmerGenie 1.6741 [186] Biology, NGS, Utilities
Kraken 0.10.4b [187] Biology, Genomics, Phylogenetics
LAMMPS 28Oct12, 30Sep13, 28Jun14 [188] Molecular Dynamics Simulation
Last 193, 247 [189] Biology, Sequence alignment
Lastz 1.03.02, 1.02.00 [190] Biology, NGS
LIBSVM 3.12 [191] Machine Learning
LSC 0.3, 0.3.1 [192] Biology, NGS, Error correction
Loci 3.3 [193] Fluid Dynamics
LS-DYNA 700, 711 [194] Physics
Lumpy 0.2.1 [195] Biology, SNP
MACH 1.0.18 [196] Biology, Genomics
MACS 1.4.2 [197] Biology, ChIP-Seq
mafft 7.037, 6.903 [198] Biology, Multiple sequence alignment
Maker 2.10, 2.25b [199] Biology, Annotation, Genomics
MapSplice 2.1.7 [200] Biology, NGS, RNA-Seq
Maq 0.7.1 [201] Biology, NGS
MARK 2.0.1 [202] Statistics
Matlab 2012a, 2013a, 2014a [203] Math, Simulation, Programming
MATS 2.1.0, 3.0.6b, 3.0.8 [204] BIology, NGS
Mauve 2.3.1 [205] Biology, NGS
MCarts 1.0.2 [206] Biology, Genomics, Markov models
MCNP 5, 6b2 [207] Physics
MCNPX 2.7.0, 2.7.0-i8 [208] Physics
Meme 4.8.1 [209] Biology, Motifs, Sequence analysis
Mercurial 2.7 [210] Development, Revision Control
Metabin 1.0 [211] Biology, Metagenomics
MetaCluster 5.0beta [212] Biology, Metagenomics
MetaCV 2.3.0 [213] Biology, NGS
METAL 20110325 [214] Biology, Genomics
MetaVelvet 1.2.01 [215] Biology, NGS
MetaGeneMark 2012.04 [216] Biology, Genomics
Mfold 3.6 [217] Biology, Genomics
MIA 20130301 [218] Biology, NGS
Midnight Commander 4.6.1 [219] Tools, Utilities
Migrate-n 3.3.0 [220] Biology, Population
mira 3.2.0, 3.4.0.1, 3.9.9, 3.9.18, 4.0.rc1 [221] Biology, NGS
MISO 0.4.4, 0.4.9 [222] Biology, NGS
MMSEQ 1.0.8 [223] Biology, NGS
MSMBuilder 2.5.1 [224] Molecular Dynamics
MOABS 1.2.9 [225] Biology, NGS, Genomics
Modeller 9.11, 9.13, 9.14 [226] Biology, Modeling
Molden 5.0 [227] Molecular, electronic structure
MolPro 2012.1p22 [228] Quantum Chemistry, Ab Initio
mosaik 2.1.33 [229] Biology,NGS
Mothur 1.31.2 [230] Biology, Microbial Ecology
MP-EST 1.4 [231] Biology, Phylogenetics
mpiP 3.4.1 [232] Parallel Computing
MrBayes 3.2.1 [233] Biology, Phylogenetics
MRIcron 201306 [234] Biology, MRI, Imaging
MUMmer 3.23 [235] Biology, Genomics
MUSCLE 3.8.31 [236] Biology, Genomics
MZMine 2.10 [237] Biology, Spectroscopy
NAMD 2.9 [238] Simulation, Chemistry, Biology
Nbody 6 [239] Astronomy
NCBI C++ Toolkit 12.0.0 [240] Biology, C++, Development
NCL 6.1.2 [241] Atmosphere Science
NCO 4.2.1, 4.4.3 [242] Data exchange tools
Ncview 2.1.2 [243] Data visualization
NetCDF 3.4.2, 4.2, 4.3 [244] Data exchange, Tools
Newbler 2.6, 2.7 [245] Biology, NGS
Nexus NCL 2.1.18 [246] Biology, Phylogenetics, Library
NMRPipe 7.9 [247] Biology, Biochemistry
Novoalign 2.08.02, 3.00.02 [248] Biology, NGS
Oases 0.2.08 [249] Biology, NGS
Olego 1.1.2, 1.1.5 [250] Biology, NGS, RNA-Seq
Octave 3.6.4 [251] Numerical Computation
OpenBabel 2.3.2 [252] Biology, Chemistry
OpenCL 1.1 [253] Programming, Library
OpenCV 2.4.8 [254] Computervision
OpenFOAM 2.1.1 [255] Fluid Dynamics
OpenMM 6.2.0 [256] Quantum Chemistry
OrthoMCL 2.0.2, 2.0.3, 2.0.7 [257] Biology, Genomics
PALES 122 [258] Physics
PAML 4.7, 4.8a [259] Biology, Phylogenetics
ParaView 4.1.0 [260] Data Analysis
PartitionFinder 1.0.1, 1.1.1 [261] Biology, Phylogenetics, Evolution
Parflow v615 [262] Ecology, Modeling
PASA 1.5, 2.0-r20130605p1, 2.0-r20130907 [263] Biology, Genomics
PAUP 4.0b10 [264] Biology, Phylogenetics
PBJelly 14.7.14 [265] Biology, Bioinformatics
PeakSplitter 1.0 [266] Biology, Chip-Seq
PEAR 0.9.2 [267] Biology, NGS
PDT 3.18 [268] Programming, Profiler
Perl 5.16.0 [269] Programming, Language
PerM 0.4.0 [270] Biology, NGS
PETSc 2.3, 3.3 [271] Math, Numerical solvers
Phenix 1.8.1069 [272] Crystallography
PHITS 2.52 [273] Physics
PhyloBayes 3.3f, 1.4f MPI [274] Biology, Phylogenetics
PhyML 3.0, 20121109 [275] Biology, Phylogenetics
Picard 1.69, 1.72, 1.80 [276] Biology, NGS
PluMiST 1.1 [277] Biology, Phylogenetics, Genomics
Preseq 0.0.4 [278] Biology, NGS
Primer3 2.3.4 [279] Biology, Genomics
ProBABEL 0.4.2, 0.4.3 [280] Biology, Genomics, GWAS
Proovread 1.03rcl [281] Biology, Genomics, NGS
Proteinortho 4.26 [282] Biology, Genomics
python 2.6.8, 2.7.3 [283] Programming, scripting, language
QIIME 1.5.0 [284] Biology, Ecology
QT 4.8.3 [285] Computer Science
Quickquartet 1.0.0 [286] Biology, Phylogenetics
R 2.15.1, 2.15.0-mpi, Rmpi/2.15.1, 3.0.0, 3.0.1, 3.0.2 [287] Statistics, Programming
R8S 1.71 [288] Biology, Evolution
RADICAL 0.2 [289] Biology, Phylogenetics, Genomics
RAxML 7.9.1, 8.0.25, 8.1.12 [290] Biology, Phylogenetics
RepeatMasker 3.3.0 [291] Biology, Genomics
Reptile 1.1 [292] Biology, NGS, error correction
riboPicker 0.4.3 [293] Biology, Sequence
RNAhybrid 2.1.1 [294] Biology, Genomics
ROOT 6.0 [295] Data Analysis
RSEG 0.4.8 [296] Biology, NGS
Sailfish 0.6.3 [297] Biology, NGS, RNA-Seq
Samblaster 0.1.14 [298] Biology, NGS
samtools 0.1.16, 0.1.18, 0.1.19 [299] Biology, NGS
SAS 9.3 [300] Statistics, Graphing
SATe 2.2.7 [301] Biology, Phylogenetics
Scalablast 2.4.53 [302] Biology, Genomics
Sharcgs 1.2.11 [303] Biology, NGS, Assembly
Schrodinger 2012, 2013 [304] Simulation, chemistry
SCons 2.3.0 [305] Programming
Scythe 0.991 [306] Biology, NGS
Segemehl 0.1.9 [307] Biology, NGS, Mapper
SeqPrep 0.5 [308] Biology, NGS
SeqMap 1.0.13 [309] Biology, NGS
Seqtk 20140729 [310] Biology, NGS
SEQuel 1.0.1 [311] Biology, NGS
SeqyClean 1.8.10 [312] Biology, NGS, quality filter
SHRiMP 2.2.3 [313] Biology, NGS
Sickle 1.200, 1.33 [314] Biology, NGS, quality filter
Siesta 2.0.2,3.1 [315] Simulation, Physics, Ab Initio
SIFT 4.0.3b [316] Biology, Genomics
Silo 4.7 [317] Library, Data
Slicer 4.3.1 [318] Biology, Imaging
SMALT 0.7.6 [319] Biology, NGS
Snap 20100728 [320] Biology, Genomics
SnpEff 3.3h, 4.0e [321] Biology, NGS, Genomics
SOAPdenovo 1.05 [322] Biology, NGS
SOAPdenovo-Trans 1.01, 1.03 [323] Biology, NGS
SparCC 201402 [324] Microbial Ecology
Spades 2.5.0, 2.5.1, 3.0.0 [325] Biology, NGS
Spanki 0.4.1, 0.4.3 [326] Biology, NGS, RNA-Seq
SPARTA+ 2.60 [327] Chemistry
SPIMAP 1.1 [328] Biology, Phylogenetics
SpliceTrap 0.90.5 [329] Biology, NGS, RNA-Seq
SPM 8 [330] Biology, Statistics, Neurology, Imaging
Sputnik 1.0 [331] Biology, Genomics
SRA 2.1.10 [332]] biology, NGS
SSPACE 2.0 [333] Biology, NGS
Stacks 0.9995 [334] Biology, Genomics, NGS
STAR 2.3.0e [335] Biology, NGS, Alignment
STAR-CCM+ 8.06 [336] Mechanical Engineering
Stata 10.1, 13 [337] Statistics, Data analysis
Stringtie 0.97 [338] Biology, NGS, Alignment
Structure 2.3.3, 2.3.4 [339] Biology, Population
SUNDIALS 2.3.0, 2.5.0 [340] Numerical Solver
SVDetect 0.8b [341] Biology, NGS, SNP
swak4Foam 2.x [342] Fluid Dynamics
swarm 1.2.11 [343] Data Analysis
Swig 2.0.9 [344] Programming, C, C++, Python
SwitchSeq 20140907 [345] Biology, NGS
Syzygy 1.2.7 [346] Biology, Genomics
TASSEL 5.0 [347] Biology, Genomics
TAU 2.21.4, 2.23 [348] Profiling, Tracing, Programming
T-Coffee 9.03.r1318 [349] Biology, Genomics, Multiple Alignment
TESS 2.3.1 [350] Biology, Genomics, Markov
tgicl 2.1 [351] Biology, sequencing, clustering
TomoPy 0.0.3 [352] Biology, Neuroimaging
Tophat 1.4.1, 2.0.13 [353] Biology, NGS
Totalview 8.12.0 [354] Computer Science
TPP 4.7.0 [355] Bioinformatics, MassSpec
TrackTools 2011 [356] Bioinformatics
TrackVis 0.5.2.2 [357] Biology, Spectroscopy
TreeFix 1.1.7 [358] Biology, Phylogenetics
TRF 4.04 [359] Biology, Genomics
Trilinos 11.4.1, 11.8.1 [360] Math Algorithm
Trim Galore 0.2.8 [361] Biology, NGS
Trimmomatic 0.22, 0.32 [362] Biology, NGS
Trinity r20131110, r20140413 [363] Biology, NGS, RNA-Seq
Twinscan 4.1.2 [364] Biology, Genomics
usearch 5.2.32, 7.0.959, 7.0.1001-64 (licensed 64-bit) [365] Biology, Sequence analysis
Valgrind 3.9.0 [366] Computer Science
VASP 4.6.34, 5.2.12, 5.3.2, 5.3.3, 5.3.5 [367] Quantum Chemistry, Ab Initio
VarScan 2.3.6 [368] Biology, NGS, Genomics
VCFLib 20121207 [369] Biology, NGS, Genomics
VCFtools 0.1.9, 0.1.10 [370] Biology, SNPs
velvet 1.2.06, 1.2.07, 1.2.10 [371] Biology, NGS
vmd 1.9.1 [372] Biology, Visualization
VTK 6.1.0 [373] Visualization, Graphics
Wannier90 1.2, 2.0.0 [374] Computational Physics
WebLogo 3.3 [375] Biology, Genomics
WDSSII 1 [376] Meteorology
WIEN2k 12.1 [377] Material Science, Chemistry
Wgs or Celera 7.0.1.22 [378] Biology, NGS
wublast 2.0 [379] Biology, Sequence Alignment
YAHA 0.1.82 [380] Biology NGS
XCrySDen 1.5.60 [381] Computational Material Science
Yambo 3.3.0 [382] Physics
Yasra 2.32 [383] Biology, NGS
  1. ↑ Up to 3 most recent/important releases are listed. See the software wiki pages and the output of "module spider software" for full version listing.

To add a documentation page for a new piece of software installed into /apps please go to Add New App Page.

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=Installed_Software&oldid=13086"