Search results

AliStat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 20:18, 1 October 2020
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
Firefox
[[Category:Software]][[Category:Linux]]

3 KB (318 words) - 16:28, 19 October 2022
Glueviz
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 17:11, 15 August 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
CRISPRCasFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 21:11, 6 December 2019
BinSanity
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (288 words) - 16:54, 10 June 2022
Bzip2
[[Category:Software]][[Category:Utility]][[Category:Library]]

2 KB (289 words) - 13:16, 15 August 2022
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
EMMAX
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]]

3 KB (304 words) - 15:06, 15 August 2022
PurgeDups
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 18:50, 27 May 2022
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
LoFreq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
AMICO
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

2 KB (247 words) - 12:40, 12 August 2022
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
IGV
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://software.broadinstitute.org/software/igv/}}

2 KB (276 words) - 18:42, 15 August 2022
Pascal
[[Category:Software]][[Category:Compiler]][[Category:Programming]]

3 KB (303 words) - 20:44, 15 August 2022
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Automlsa2
[[Category:Software]]

2 KB (266 words) - 15:25, 12 August 2022
FlowCraft
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 14:18, 10 July 2020
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
Sourmash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 15:45, 22 August 2022
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
DTI-TK
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

3 KB (311 words) - 18:51, 12 August 2022
Ncbi cli
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Library]]

3 KB (306 words) - 15:47, 9 June 2023
GARLI
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:exe|1}} 

3 KB (485 words) - 16:53, 15 August 2022
NCBI BLAST+
[[Category:Software]][[Category:biology]]

3 KB (344 words) - 19:55, 12 August 2022
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
Category:Database
[[Category:Software]]

5 members (0 subcategories, 0 files) - 15:33, 6 February 2015
Category:Math
[[Category:Software]]

64 members (1 subcategory, 0 files) - 21:45, 24 October 2022
Crisflash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 22:15, 26 August 2020
BERTopic
[[Category:Software]][[Category:Machine Learning]]

2 KB (283 words) - 14:00, 27 May 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
Stata
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|1}} 

4 KB (621 words) - 15:23, 5 January 2023
Came
[[Category:Software]][[Category:Phylogenetics]]

3 KB (371 words) - 21:02, 6 December 2019
Libvips
[[Category:Software]][[Category:Image Processing]]

2 KB (255 words) - 20:10, 26 May 2022
MPB
[[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele

3 KB (344 words) - 21:21, 6 December 2019
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
Bcl2fastq
[[Category:Software]][[Category:Biology]][[Category:NGS]] bcl2fastq conversion software can be used to both demultiplex data and

3 KB (328 words) - 18:12, 12 August 2022
VMD
[[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.

3 KB (384 words) - 17:33, 22 August 2022
Sciann
[[Category:Software]]

3 KB (307 words) - 20:09, 3 August 2023
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
VASP make
[[Category:Software]]

2 KB (249 words) - 03:23, 17 April 2018
Autodock-vina
[[Category:Software]]

3 KB (343 words) - 19:31, 9 November 2022
GUI Programs
[[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.

2 KB (390 words) - 14:42, 30 January 2023
IAnnotateSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge

3 KB (330 words) - 21:21, 6 December 2019
SNAPE-pooled
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (270 words) - 12:56, 15 August 2022
Bioawk
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 12:54, 15 August 2022
Umi-tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:46, 4 September 2020
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
SVDetect
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (303 words) - 20:46, 12 August 2022
Asteroid
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (380 words) - 16:32, 1 February 2023
HAPCUT
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (298 words) - 18:13, 15 August 2022
Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
Category:Machine Learning
[[Category:Software]]

43 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
Parabricks
[[Category:Software]][[Category:Phylogenetics]] ...ardefine:url|https://www.nvidia.com/en-us/docs/parabricks/quickstart-guide/software-overview/}}

4 KB (574 words) - 21:25, 14 December 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
Stringtie
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:NGS]][[Category:Seque |{{#vardefine:url|http://ccb.jhu.edu/software/stringtie/}}

3 KB (301 words) - 20:45, 12 August 2022
IDR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 15:50, 12 December 2019
Newbler
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]][[Category:De Nov Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for

2 KB (305 words) - 16:17, 19 August 2022
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
LillyMol
[[Category:Software]]

2 KB (236 words) - 14:39, 27 January 2023
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
DoGFinder
[[Category:Software]][[Category:Phylogenetics]] DoGFinder software is a package that identifies DoGs and quantifies their expression levels, f

2 KB (252 words) - 21:58, 3 November 2020
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
IDBA-UD
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (354 words) - 18:40, 15 August 2022
DDT
[[Category:Software]][[Category:Utility]]

5 KB (754 words) - 19:24, 30 October 2023
MHCflurry
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 16:07, 21 February 2020
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
Randfold
[[Category:Software]][[Category:Biology]]

2 KB (262 words) - 21:29, 21 August 2022
DISCOVAR de novo
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}

3 KB (326 words) - 14:41, 15 August 2022
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
QDD
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

4 KB (485 words) - 20:08, 21 August 2022
Dlib
[[Category:Software]][[Category:Phylogenetics]] ...lkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main proje

2 KB (269 words) - 13:11, 4 May 2020
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
Langdetect
[[Category:Software]]

2 KB (242 words) - 17:01, 23 August 2022
PCRE
[[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.

3 KB (307 words) - 12:10, 26 August 2022
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
Diamond
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:url| http://ab.inf.uni-tuebingen.de/software/diamond/}}

3 KB (307 words) - 14:41, 15 August 2022
PyVCF
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (236 words) - 20:08, 21 August 2022
EnergyPlus
[[Category:Software]][[Category:Simulation]]

2 KB (266 words) - 13:34, 31 July 2020
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
Asap
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

3 KB (295 words) - 17:29, 9 June 2022
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
AGfusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:26, 26 August 2020
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
Category:Chemistry
[[Category:Software]]

34 members (0 subcategories, 0 files) - 21:45, 24 October 2022
OpenBabel
[[Category:Software]][[Category:Biology]]

2 KB (283 words) - 17:51, 19 August 2022
AMRPlusPlus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 21:19, 6 December 2019
Pyfasta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:58, 21 August 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
Gblocks
[[Category:Software]][[Category:Biology]]

3 KB (441 words) - 13:56, 13 June 2022
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
MMseqs2
[[Category:Software]][[Category:Phylogenetics]] ...ed in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good sca

3 KB (413 words) - 20:22, 2 October 2023
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
Sharing Within A Cluster
...in their storage trees. This is the most appropriate way to share data and software among group members.

4 KB (682 words) - 15:25, 13 July 2023
Ngmlr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 16:24, 10 June 2022
Asaq
[[Category:Software]][[Category:Alignment]][[Category:Sequencing]][[Category:Phylogenetics]] Please cite the following papers if you use Armadillo in your research and/or software.

3 KB (374 words) - 15:10, 1 June 2022
Ansysem
[[Category:Software]][[Category:Physics]]

2 KB (240 words) - 16:11, 23 March 2023
MOSAIK
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} 

3 KB (414 words) - 11:59, 19 August 2022
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
BRATNextGen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BRAT-NextGen/}}

2 KB (268 words) - 13:10, 15 August 2022
Mmaction2
[[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]

2 KB (277 words) - 19:16, 6 June 2023
RATTLE
[[Category:Software]]

2 KB (244 words) - 14:40, 28 July 2023
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
Sickle
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (551 words) - 22:56, 21 August 2022
SeqyClean
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (312 words) - 22:41, 21 August 2022
Botorch
[[Category:Software]]

2 KB (288 words) - 18:11, 22 September 2022
IRAP
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (296 words) - 20:10, 24 August 2022
Gurobi
[[Category:Software]][[Category:Math]][[Category:Programming]]

2 KB (269 words) - 12:22, 26 August 2022
PHYLIP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:42, 10 June 2022
OrthoFiller
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 20:02, 31 May 2022
Meshroom
[[Category:Software]][[Category:Phylogenetics]] Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework.

2 KB (252 words) - 22:27, 8 September 2020
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
PlantTribes
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 13:29, 4 October 2021
EQTLA
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (269 words) - 18:52, 12 August 2022
Ms-dial
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

3 KB (385 words) - 13:32, 19 August 2022
OpenSim
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 17:57, 19 August 2022
Mlcoalsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...rl|https://bioinformatics.cragenomica.es/numgenomics/people/sebas/software/software.html}}

3 KB (324 words) - 21:22, 6 December 2019
PHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (232 words) - 18:13, 21 August 2022
Asset
[[Category:Software]]

2 KB (253 words) - 20:07, 15 June 2023
Dropseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 13:29, 23 September 2020
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
Flexbar
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

2 KB (285 words) - 16:45, 15 August 2022
Hapsembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (332 words) - 18:15, 15 August 2022
Pbtk
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]]

2 KB (227 words) - 13:56, 7 April 2023
MACS
[[Category:Software]][[Category:ChIP-Seq]][[Category:Biology]] |{{#vardefine:exe|}} 

3 KB (384 words) - 19:47, 12 August 2022
CNSpipeline
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:19, 6 December 2019
QMCPACK
[[Category:Software]][[Category:Library]]

2 KB (259 words) - 21:24, 6 December 2019
Pindel
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:23, 6 December 2019
Metacrast
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 17:58, 27 May 2022
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
RSEG
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (308 words) - 21:58, 21 August 2022
TASSEL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]] ...a group focused on maize genetics and genomics, and for these reasons that software has design and computational optimizations that account for the biology fou

3 KB (386 words) - 16:13, 22 August 2022
Pyrpipe
[[Category:Software]][[Category:Phylogenetics]]

3 KB (311 words) - 15:22, 16 March 2020
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
BWA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (317 words) - 18:22, 12 August 2022
DeTiN
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (249 words) - 14:39, 15 August 2022
VeryFastTree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 12 February 2021
PLUMED
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (290 words) - 15:30, 19 August 2022
Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
XCrySDen
[[Category:Software]][[Category:Material Science]]

2 KB (282 words) - 17:47, 22 August 2022
RiboCode
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 17:44, 20 May 2020
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
Category:Revision Control
[[Category:Software]][[Category:CLI]]

3 members (0 subcategories, 0 files) - 17:23, 3 June 2022
Booster
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:11, 6 December 2019
TransVar
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (335 words) - 18:16, 2 May 2022
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
Blender
[[Category:Software]][[Category:Graphics]]

2 KB (295 words) - 13:03, 15 August 2022
Ngs-bits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (296 words) - 16:57, 10 June 2022
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
SIPeS
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

3 KB (327 words) - 20:41, 12 August 2022
TREEPUZZLE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (450 words) - 19:31, 10 June 2022
Ribotricer
[[Category:Software]]

2 KB (245 words) - 18:41, 2 October 2023
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
R libraries
[[Category:Software]]

265 bytes (30 words) - 13:59, 30 June 2017
JAGS
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 17:12, 10 June 2022
PhiSpy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (291 words) - 21:23, 6 December 2019
HapQTL
[[Category:Software]][[Category:Biology]] This software performs association testing between local haplotypes and phenotypes at eac

2 KB (247 words) - 18:15, 15 August 2022
Msvar
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.

2 KB (260 words) - 13:35, 19 August 2022
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
Mobsuite
[[Category:Software]] Software tools for clustering, reconstruction and typing of plasmids from draft asse

3 KB (340 words) - 20:03, 10 October 2022
Trvz
[[Category:Software]]

2 KB (273 words) - 14:46, 28 July 2023
Fastsimcoal
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:url|http://cmpg.unibe.ch/software/fastsimcoal2/}}

4 KB (481 words) - 15:25, 15 August 2022
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
HyPhy
[[Category:Software]][[Category:Biology]][[Category:Genomics]] HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogene

3 KB (380 words) - 18:36, 15 August 2022
MACH
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] haplotypes thereof as proxies. MACH software implements a computationally

3 KB (363 words) - 20:23, 15 August 2022
SuperCRUNCH
[[Category:Software]][[Category:Phylogenetics]]

4 KB (499 words) - 14:47, 11 May 2020
HISAT2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Alignment]] |{{#vardefine:url|https://ccb.jhu.edu/software/hisat2/index.shtml}}

3 KB (399 words) - 19:31, 24 August 2022
Mg-rast
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (267 words) - 21:21, 6 December 2019
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
Ensembl Tools
[[Category:Software]][[Category:Biology]][[Category:Biology]]

3 KB (333 words) - 18:52, 12 August 2022
Category:Healthcare
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
KMOS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 14:35, 4 September 2020
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
ProSplign
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 17:08, 1 June 2022
GASVPro
[[Category:Software]][[Category:Biology]][[Category:NGS]] GASV (Geometric Analysis of Structural Variants) is software for identifying and structural variants (SVs) from paired-end sequencing da

2 KB (248 words) - 18:57, 12 August 2022
TACO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 18:53, 1 June 2022
Staden
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (254 words) - 15:59, 22 August 2022
Nanofilt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 13:48, 19 August 2022
LDhat
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:09, 10 June 2022
Tecplot 360 EX
[[Category:Software]][[Category:Math]][[Category:Animation]][[Category:Fluid Dynamics]][[Catego

3 KB (337 words) - 14:56, 19 August 2022
Mixmogam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 22:42, 8 September 2020
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
Ima2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software#IMa2}}

2 KB (265 words) - 18:45, 15 August 2022
GCC
[[Category:Software]][[Category: Compiler]]

2 KB (251 words) - 16:55, 15 August 2022
Computer Vision
This page describes the collection of Computer Vision software on HiperGator. Computer vision is a crucial field of artificial intelligenc ...ow|tensorflow]] or ngc-tensorflow''': TensorFlow is a free and open-source software library for machine learning and artificial intelligence. '''ngc-tensorFlow

4 KB (563 words) - 20:59, 21 December 2022
Git
[[Category:Software]][[Category:Revision Control]]

2 KB (301 words) - 17:09, 15 August 2022
Alphaimpute
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}

3 KB (337 words) - 12:37, 12 August 2022
IMa2p
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 21:21, 6 December 2019
Rrnaselector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (304 words) - 21:24, 6 December 2019
Alfred
[[Category:Software]]

3 KB (294 words) - 19:29, 14 November 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Memory: Shared vs Distributed
...he processors can access other processor's memory only through network. In software sense, it means each processor only can see local machine memory directly a

2 KB (346 words) - 19:44, 16 January 2023
GEM
[[Category:Software]] [[Category:Biology]] [[Category:NGS]][[Category:Sequencing]]

2 KB (254 words) - 17:00, 15 August 2022
Orthograph
[[Category:Software]][[Category:Biology]]

2 KB (261 words) - 18:00, 19 August 2022
Category:Biology
[[Category:Research]][[Category:Software]]

985 members (9 subcategories, 0 files) - 17:21, 3 June 2022
Cgmaptools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 21:01, 6 December 2019
NEURON
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

2 KB (249 words) - 14:58, 10 June 2022
Bxh xcede tools
[[Category:Software]][[Category:Biology]]

2 KB (291 words) - 18:22, 12 August 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
Seqmule
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (342 words) - 19:06, 15 September 2022
VIRULIGN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 19:53, 20 April 2020
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Bowtie
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (443 words) - 13:06, 15 August 2022
PyTorch
[[Category:Software]][[Category:Library]][[Category:Math]] ...neural networks and deep learning. PyTorch also has a large user base and software ecosystem.

5 KB (691 words) - 16:39, 14 December 2022
AMP
[[Category:Software]][[Category:phylogenetics]]

2 KB (271 words) - 16:08, 6 June 2022
Razers3
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 16:50, 10 June 2022
LobSTR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (259 words) - 15:19, 10 June 2022
GDB
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}

4 KB (494 words) - 16:13, 9 January 2023
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
HapCompass
[[Category:Software]][[Category:Genomics]][[Category:NGS]]

2 KB (287 words) - 18:13, 15 August 2022
FEELnc
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 18:53, 10 July 2020
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
CD-HIT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (354 words) - 18:24, 12 August 2022
RGI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 21:24, 6 December 2019
BBMap
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

3 KB (349 words) - 17:55, 10 June 2022
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
HelitronScanner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
CheckM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (327 words) - 18:27, 12 August 2022
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
Probalign
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (349 words) - 19:36, 21 August 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
CRISPRanalyzer
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (294 words) - 14:12, 15 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Category:Library
[[Category:Software]] Libraries available for use by other software and for development.

87 members (0 subcategories, 0 files) - 04:37, 29 June 2012
MET
[[Category:Software]]

3 KB (365 words) - 20:04, 24 August 2022
Circleator
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:18, 6 December 2019
RepeatModeler
[[Category:Software]][[Category:Biology]]

3 KB (297 words) - 20:32, 12 August 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
Python Modules
[[Category:Software]]

415 bytes (50 words) - 20:40, 5 April 2018
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
GOMAP
[[Category:Software]][[Category:Biology]]

2 KB (263 words) - 17:17, 15 August 2022

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