Search results

SCRATCH-1D
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (381 words) - 20:35, 12 August 2022
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
Parabricks
[[Category:Software]][[Category:Phylogenetics]] ...ardefine:url|https://www.nvidia.com/en-us/docs/parabricks/quickstart-guide/software-overview/}}

4 KB (574 words) - 21:25, 14 December 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
PGDSpider
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.cmpg.unibe.ch/software/PGDSpider/}}

3 KB (387 words) - 19:04, 10 June 2022
Proovread
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (269 words) - 20:27, 12 August 2022
LibMesh
[[Category:Software]][[Category:Math]]

2 KB (281 words) - 19:51, 15 August 2022
IDR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 15:50, 12 December 2019
FGTPartitioner
[[Category:Software]] ...stry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030

2 KB (266 words) - 19:05, 28 June 2023
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
DoGFinder
[[Category:Software]][[Category:Phylogenetics]] DoGFinder software is a package that identifies DoGs and quantifies their expression levels, f

2 KB (252 words) - 21:58, 3 November 2020
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
Powerfit
[[Category:Software]][[Category:Physics]]

3 KB (318 words) - 21:24, 7 March 2023
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
BAM-matcher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 21:07, 6 December 2019
MHCflurry
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 16:07, 21 February 2020
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
Sra-human-scrubber
[[Category:Software]][[Category:Genomics]]

3 KB (395 words) - 15:57, 22 August 2022
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
TreeMix
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (356 words) - 17:56, 10 June 2022
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
Dlib
[[Category:Software]][[Category:Phylogenetics]] ...lkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main proje

2 KB (269 words) - 13:11, 4 May 2020
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
Email storage alert
[[Category:Software]]

2 KB (231 words) - 21:37, 5 July 2023
Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
AltAnalyze
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or a

3 KB (398 words) - 19:14, 10 June 2022
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
Protege
[[Category:Software]][[Category:Genomics]]

2 KB (232 words) - 20:19, 24 August 2022
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
EnergyPlus
[[Category:Software]][[Category:Simulation]]

2 KB (266 words) - 13:34, 31 July 2020
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
Viromescan
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (236 words) - 18:36, 24 March 2023
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
AGfusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:26, 26 August 2020
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
PHITS
[[Category:Software]][[Category:Physics]]

3 KB (336 words) - 12:38, 15 May 2024
BIRDS
[[Category:Software]][[Category:Imaging]][[Category:Workflow Automation]][[Category:Utility]]

2 KB (263 words) - 13:01, 15 August 2022
AMRPlusPlus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 21:19, 6 December 2019
Pymesh
[[Category:Software]]

2 KB (271 words) - 16:09, 9 March 2023
RAPSearch
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (304 words) - 21:24, 6 December 2019
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
BppSuite
[[Category:Software]][[Category:Genomics]]

2 KB (248 words) - 15:37, 9 December 2022
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
MMseqs2
[[Category:Software]][[Category:Phylogenetics]] ...ed in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good sca

3 KB (413 words) - 20:22, 2 October 2023
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
UFRC Help and Documentation
| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]] ...padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>

5 KB (656 words) - 14:10, 19 March 2024
Maxima
[[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (298 words) - 21:21, 6 December 2019
DRAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:20, 6 December 2019
Asaq
[[Category:Software]][[Category:Alignment]][[Category:Sequencing]][[Category:Phylogenetics]] Please cite the following papers if you use Armadillo in your research and/or software.

3 KB (374 words) - 15:10, 1 June 2022
Category:Annotation
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:54, 22 August 2022
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
Blast2GO
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

6 KB (920 words) - 14:08, 16 March 2023
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
RATTLE
[[Category:Software]]

2 KB (244 words) - 14:40, 28 July 2023
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
FSL
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]

3 KB (365 words) - 16:47, 17 January 2023
Bcftools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 19:09, 11 April 2024
Centrifuge
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (355 words) - 21:05, 6 December 2019
Botorch
[[Category:Software]]

2 KB (288 words) - 18:11, 22 September 2022
Taxtastic
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (263 words) - 15:45, 19 August 2022
MITE-Hunter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (250 words) - 15:05, 10 June 2022
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
Meshroom
[[Category:Software]][[Category:Phylogenetics]] Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework.

2 KB (252 words) - 22:27, 8 September 2020
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
CONSEL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (375 words) - 18:43, 10 June 2022
MP-EST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

4 KB (489 words) - 12:01, 19 August 2022
PHASE
[[Category:Software]][[Category:Phylogenetics]] In all cases, please specify the version of the software used, and any deviations from the default options.

2 KB (276 words) - 18:09, 21 August 2022
Ms-dial
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

3 KB (385 words) - 13:32, 19 August 2022
Pyfaidx
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (340 words) - 19:58, 21 August 2022
SOAPdenovo-Trans
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (283 words) - 00:05, 22 August 2022
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
Dropseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 13:29, 23 September 2020
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
FALCON fc large run cfg
[[Category:Software]]

2 KB (266 words) - 20:30, 2 August 2021
EXpress
[[Category:Software]][[Category:Biology]][[Category:NGS]] This module enables the use of the eXpress software

3 KB (383 words) - 18:53, 12 August 2022
SOAPaligner
[[Category:Software]][[Category:Phylogenetics]] ...(Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast

3 KB (334 words) - 21:24, 6 December 2019
Pbtk
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]]

2 KB (227 words) - 13:56, 7 April 2023
RGIS
[[Category:Software]][[Category:Geospatial]] ...software. RiverGIS is not intended to replace or compete with existing GIS software. It was designed to complement existing GIS packages (like ARC/INFO) and pr

3 KB (370 words) - 20:27, 24 August 2022
Resistify
[[Category:Software]]

2 KB (264 words) - 16:44, 6 February 2024
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
Metacrast
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 17:58, 27 May 2022
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
DealII
[[Category:Software]][[Category:Library]]

2 KB (250 words) - 19:56, 13 June 2022
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
Dadi
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 21:21, 6 December 2019
Pyrpipe
[[Category:Software]][[Category:Phylogenetics]]

3 KB (311 words) - 15:22, 16 March 2020
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
Picard-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

6 KB (882 words) - 15:25, 27 January 2023
VeryFastTree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 12 February 2021
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
Annotated SLURM Script
* Load the software you need

3 KB (502 words) - 20:49, 13 May 2024
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
RiboCode
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 17:44, 20 May 2020
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
SPM
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}

3 KB (327 words) - 17:00, 13 February 2024
HPG Computation
...open a support ticket to request RC to install the software in one of our software environments if it will be widely used. ==Using installed software==

5 KB (760 words) - 17:35, 22 April 2024
Booster
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:11, 6 December 2019
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
CryptoMiniSat
[[Category:Software]][[Category:Math]]

3 KB (325 words) - 14:13, 15 August 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
Unanimity
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Compiler]]

2 KB (268 words) - 17:48, 15 August 2022
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
Blast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (402 words) - 18:17, 12 August 2022
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
Ribotricer
[[Category:Software]]

2 KB (245 words) - 18:41, 2 October 2023
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Pycharm-pro
[[Category:Software]]

2 KB (271 words) - 15:56, 27 June 2023
DeNoGAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (272 words) - 21:20, 6 December 2019
PhiSpy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (291 words) - 21:23, 6 December 2019
Lambda
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
ABySS
[[Category:Software]][[Category:Biology]][[Category:De Novo]] |{{#vardefine:url|http://www.bcgsc.ca/platform/bioinfo/software/abyss}}

2 KB (315 words) - 16:17, 19 August 2022
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
Fastsimcoal
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:url|http://cmpg.unibe.ch/software/fastsimcoal2/}}

4 KB (481 words) - 15:25, 15 August 2022
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
ARPACK
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.caam.rice.edu/software/ARPACK/}}

2 KB (255 words) - 14:42, 12 August 2022
MZMine
[[Category:Software]][[Category:Spectroscopy]][[Category:Biology]]

3 KB (417 words) - 13:28, 7 July 2023
Pigz
[[Category:Software]][[Category:Compression]]

2 KB (245 words) - 21:23, 6 December 2019
SuperCRUNCH
[[Category:Software]][[Category:Phylogenetics]]

4 KB (499 words) - 14:47, 11 May 2020
Vcfanno
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (291 words) - 21:29, 6 December 2019
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
PASA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (687 words) - 21:04, 4 January 2023
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
KMOS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 14:35, 4 September 2020
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
Barrnap
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.barrnap.shtml}}

3 KB (328 words) - 17:55, 10 June 2022
EQtlBma
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (254 words) - 18:52, 12 August 2022
Wgsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (343 words) - 21:29, 6 December 2019
TACO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 18:53, 1 June 2022
Brkraw
[[Category:Software]]

2 KB (287 words) - 13:35, 24 October 2022
Platon
[[Category:Software]] <code>Robertson J., Nash J. H. E. (2018) MOB-suite: Software Tools for Clustering, Reconstruction and Typing of Plasmids From Draft Asse

4 KB (437 words) - 17:14, 14 December 2022
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
Mixmogam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 22:42, 8 September 2020
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
SEQPower
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Phylogenetics]]

2 KB (274 words) - 22:38, 21 August 2022
Slicer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...le platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform

3 KB (346 words) - 15:42, 8 April 2024
Astropy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 15:18, 12 August 2022
Computer Vision
This page describes the collection of Computer Vision software on HiperGator. Computer vision is a crucial field of artificial intelligenc ...ow|tensorflow]] or ngc-tensorflow''': TensorFlow is a free and open-source software library for machine learning and artificial intelligence. '''ngc-tensorFlow

4 KB (563 words) - 20:59, 21 December 2022
PyRosetta
[[Category:Software]][[Category:biology]][[Category:structure]][[Category:modeling]]

2 KB (267 words) - 21:24, 6 December 2019
SIFT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 20:40, 12 August 2022
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
Alfred
[[Category:Software]]

3 KB (294 words) - 19:29, 14 November 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Bam-Readcount
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 15:11, 10 June 2022
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
Longshot
[[Category:Software]][[Category:Genomics]]

3 KB (352 words) - 20:04, 26 July 2023
Orthograph
[[Category:Software]][[Category:Biology]]

2 KB (261 words) - 18:00, 19 August 2022
EDirect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (357 words) - 14:55, 15 August 2022
WDSSII
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (299 words) - 20:05, 24 August 2022
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
Quake
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://www.cbcb.umd.edu/software/quake/}}

3 KB (367 words) - 18:50, 10 June 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
VIRULIGN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 19:53, 20 April 2020
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Pbalign
[[Category:Software]][[Category:biology]]

2 KB (243 words) - 20:15, 12 August 2022
AMP
[[Category:Software]][[Category:phylogenetics]]

2 KB (271 words) - 16:08, 6 June 2022
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
MEGAHIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (367 words) - 18:31, 18 August 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
Xlsx2csv
[[Category:Software]]

2 KB (241 words) - 20:08, 24 October 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
FEELnc
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 18:53, 10 July 2020
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
Clview
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 13:48, 15 August 2022
Grib api
[[Category:Software]][[Category:Compiler]][[Category:Library]] |{{#vardefine:url|https://software.ecmwf.int/wiki/display/GRIB}}

2 KB (278 words) - 17:22, 15 August 2022
RGI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 21:24, 6 December 2019
ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...and 2) reduce reference bias as compared to mapping based approaches. The software is designed to work in situations where a whole-genome assembly is not the

3 KB (430 words) - 14:32, 12 August 2022
IM and IMa
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software}}

2 KB (299 words) - 18:44, 15 August 2022
HelitronScanner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
Xerces
[[Category:Software]][[Category:phylogenetics]]

3 KB (306 words) - 21:29, 6 December 2019
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
MarkerMiner
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (385 words) - 19:47, 12 August 2022
CRISPRanalyzer
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (294 words) - 14:12, 15 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Velocyto
[[Category:software]][[Category:biology]][[Category:sequencing]]

2 KB (275 words) - 00:33, 25 May 2023
MODELLER
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]]

3 KB (364 words) - 19:53, 12 August 2022
Circleator
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:18, 6 December 2019
Vcf-validator
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 17:27, 22 August 2022
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
Structure
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (325 words) - 16:03, 22 August 2022
Metaxa2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://microbiology.se/software/metaxa2/}}

3 KB (300 words) - 19:29, 18 August 2022
GOMAP
[[Category:Software]][[Category:Biology]]

2 KB (263 words) - 17:17, 15 August 2022
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
DALIGNER
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:28, 15 August 2022
Quickquartet
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:02, 21 August 2022
DiCal2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (245 words) - 21:21, 6 December 2019
Hgraph2graph
[[Category:Software]] The scripts for this software should be execytes using the path from the HPC_HGRAPH2GRAPH_BIN environment

2 KB (279 words) - 17:06, 14 June 2022
Trelis
[[Category:Software]][[Category:Math]] ...for complex FEA and CFD simulation. It is based on the time-proven CUBIT™ software from Sandia National Laboratories. For more than two decades, csimsoft and

2 KB (291 words) - 17:05, 22 August 2022
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
Auto3DEM
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://cryoem.ucsd.edu/wikis/software/start.php?id=auto3dem:home}}

3 KB (433 words) - 15:24, 12 August 2022
Ugtm
[[Category:Software]][[Category:Statistics]][[Category:Modeling]]

2 KB (247 words) - 16:58, 6 June 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
BUSCO
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

5 KB (607 words) - 19:38, 27 March 2023
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
Erpin
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://rna.igmors.u-psud.fr/Software/erpin.php}}

3 KB (377 words) - 21:21, 6 December 2019
READemption
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:58, 1 June 2022
Scons
[[Category:Software]][[Category:Programming]] ...on scripts. This gives SCons many powerful capabilities not found in other software build tools.

2 KB (293 words) - 21:24, 6 December 2019
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
HyDe
[[Category:Software]][[Category:Phylogenetics]] HyDe is a software package that detects hybridization in phylogenomic data sets using phylogen

3 KB (301 words) - 20:41, 30 September 2020
Bruker2nifti
[[Category:Software]][[Category:Phylogenetics]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]

3 KB (300 words) - 15:31, 3 June 2022
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
Flye
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:20, 6 December 2019
ATLAS
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

3 KB (317 words) - 15:19, 12 August 2022
CisTEM
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://cistem.org/software}}

3 KB (349 words) - 13:35, 15 August 2022
Topd
[[Category:Software]][[Category:Phylogenetics]] ...'''Split, Quartets & Triplets''', and '''Disagree'''. Each option of this software is also complemented with a random analysis to test the null hypothesis tha

3 KB (439 words) - 21:24, 31 August 2023
OpenMPI
[[Category:Software]][[Category:Programming]][[Category:Library]] ...the best MPI library available. Open MPI offers advantages for system and software vendors, application developers and computer science researchers.

3 KB (337 words) - 19:02, 21 July 2023
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
Software Development
#REDIRECT [[Software Development Policies]]

43 bytes (4 words) - 20:46, 6 June 2022
Edyeet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 19:43, 4 November 2020
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
PBGCpp
[[Category:Software]][[Category:Phylogenetics]]

2 KB (229 words) - 20:05, 31 May 2022
Sambamba
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (299 words) - 20:33, 12 August 2022
Rust
[[Category:Software]][[Category:Programming]]

2 KB (285 words) - 21:24, 6 December 2019
MafFilter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 17:01, 24 February 2020
P7zip
[[Category:Software]][[Category:Utility]]

2 KB (254 words) - 17:34, 15 August 2022
Amuse
[[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat

2 KB (287 words) - 20:34, 15 August 2022
NextGenMap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 16:24, 19 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
BoltzTraP
[[Category:Software]][[Category:Physics]]

2 KB (279 words) - 16:19, 10 June 2022
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
SortaDate
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:42, 4 May 2020
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
GeneMark-ES
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (303 words) - 16:44, 27 May 2022
AntiSMASH
[[Category:Software]][[Category:Phylogenetics]]

3 KB (409 words) - 21:11, 6 December 2019
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
Rmats2sashimiplot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 21:56, 21 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
EMBOSS
[[Category:Software]][[Category:Biology]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.

3 KB (372 words) - 15:01, 15 August 2022
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
Radorgminer
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

3 KB (297 words) - 21:55, 6 July 2022
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
FALCON fc run cfg
[[Category:Software]]

2 KB (248 words) - 20:31, 2 August 2021
PfamScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:19, 12 August 2022
ALFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 21:33, 26 August 2020
Trim isoseq polya
[[Category:Software]]

2 KB (298 words) - 15:04, 19 August 2022
Mothur
[[Category:Software]][[Category:Biology]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (321 words) - 12:00, 19 August 2022
LACHESIS
[[Category:Software]][[Category:Phylogenetics]] LACHESIS: A software tool to measure the thread of life.

2 KB (263 words) - 21:21, 6 December 2019
Seekdeep
[[Category:Software]]

2 KB (281 words) - 17:03, 24 July 2023
Dancemapper
[[Category:Software]][[Category:Machine Learning]]

2 KB (252 words) - 22:13, 6 March 2023
MCScanX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...MCScan algorithm for detection of synteny and collinearity and extends the software by incorporating 15 utility programs for display and further analyses.

3 KB (350 words) - 21:21, 6 December 2019

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