Search results

FAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (298 words) - 18:54, 12 August 2022
Program Database Toolkit
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Performance Analys uniform way through a class library supporting common PDB operations. Software

3 KB (370 words) - 14:38, 18 October 2022
PanX
[[Category:Software]][[Category:Phylogenetics]] panX is a software package for pan-genome analysis, interactive visualization and exploration.

3 KB (346 words) - 21:22, 6 December 2019
4p
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] 4P (Parallel Processing of Polymorphism Panels) is a software for computing

2 KB (285 words) - 20:36, 11 August 2022
SHEsisPlus
[[Category:Software]][[Category:Biology]][[Category:Genomics]] SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, li

3 KB (344 words) - 15:04, 19 August 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
Draft:UFRC Help and Documentation Testy
==Software and Reference Data== | style="width: 7%; vertical-align: left" | [[Image:Software.png|right|frameless|upright=0.25]]

4 KB (540 words) - 14:05, 30 March 2023
Conda
[[Category:Software]][[Category:Programming]]

16 KB (2,392 words) - 20:14, 16 April 2024
AI Reference Datasets
You may need to use the full path /blue/data/ai for software applications to find the file.

2 KB (256 words) - 15:03, 28 September 2021
PerM
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Mapping]] PerM is a software package which was designed to perform highly efficient genome scale alignme

3 KB (396 words) - 17:40, 21 August 2022
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
SQANTI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 21:24, 6 December 2019
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
NextGenMap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 16:24, 19 August 2022
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
RSEM
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data

3 KB (390 words) - 21:59, 21 August 2022
Bertini
[[Category:Software]][[Category:Math]] Software for solving polynomial systems

2 KB (248 words) - 12:48, 15 August 2022
SCIrun
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.sci.utah.edu/cibc-software/scirun.html}}

3 KB (344 words) - 22:09, 21 August 2022
PhyloBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:20, 12 August 2022
Garfield
[[Category:Software]][[Category:Genomics]]

3 KB (342 words) - 22:51, 30 November 2022
MPFR
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (302 words) - 21:22, 6 December 2019
SUMO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:24, 6 December 2019
PyCharm
[[Category:Software]][[Category:Programming]]

2 KB (229 words) - 12:24, 26 August 2022
Popoolation
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 21:23, 6 December 2019
Ovito
[[Category:Software]][[Category:Programming]]

3 KB (333 words) - 15:29, 1 December 2023
VEP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (270 words) - 17:28, 22 August 2022
Dtiprep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 21:50, 27 August 2020
Catch
[[Category:Software]]

3 KB (422 words) - 18:23, 12 August 2022
BRANCH
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]] BRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA co

3 KB (309 words) - 13:09, 15 August 2022
Ferret
[[Category:Software]][[Category: Geospatial]][[Category:Climate]][[Category:Visualization]][[Ca |{{#vardefine:exe|}} 

3 KB (359 words) - 20:26, 24 August 2022
OCOCO
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (284 words) - 21:22, 6 December 2019
Caper
[[Category:Software]][[Category:Data_Science]]

3 KB (425 words) - 14:43, 11 October 2023
GDC-Client
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (311 words) - 18:57, 12 August 2022
BEAR
[[Category:Software]][[Category:Biology]][[Category:genomics]]

2 KB (274 words) - 18:13, 12 August 2022
Helixer
[[Category:Software]]

2 KB (254 words) - 17:38, 19 April 2024
Rvtests
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]] Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets.

3 KB (293 words) - 21:59, 21 August 2022
MEGASAT
[[Category:Software]][[Category:Phylogenetics]] MEGASAT is a software tool that can automatically infer genotypes from high-throughput microsatel

2 KB (278 words) - 13:22, 28 August 2020
MONAI label
[[Category:Software]][[Category:Healthcare]]

3 KB (377 words) - 11:56, 19 August 2022
MRtrix
[[Category:Software]][[Category:Biology]][[Category:Imaging]] ...Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (

3 KB (311 words) - 20:34, 24 August 2022
MGERT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 14:20, 15 September 2020
Scipion
[[Category:Software]][[Category:Image Processing]] ...ts and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all step

2 KB (289 words) - 21:24, 6 December 2019
TURBOMOLE
[[Category:Software]][[Category:Chemistry]] TURBOMOLE is a licensed software. To use it, please provide your license. We will set the file permissions a

3 KB (369 words) - 17:42, 15 August 2022
Blast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (402 words) - 18:17, 12 August 2022
Ssr pipeline
[[Category:Software]][[Category:biology]][[Category:Sequencing]] ...hon installed on their computers or who do not have the ability to compile software also may choose to download packaged executable files. These files include

4 KB (501 words) - 18:55, 6 June 2022
IQ-TREE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/iqtree/}}

3 KB (395 words) - 14:51, 14 December 2022
MetaPhysicl
[[Category:Software]][[Category:Math]][[Category:Astronomy]][[Category:Simulation]]

2 KB (247 words) - 19:28, 18 August 2022
CCMetagen
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 22:45, 3 January 2022
Transrate
[[Category:Software]][[Category:Biology]][[Category:Assembly]] Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assem

3 KB (316 words) - 16:54, 22 August 2022
Mpinterfaces
[[Category:Software]][[Category:Math]]

2 KB (279 words) - 12:27, 19 August 2022
Faqcs
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (268 words) - 17:48, 18 May 2023
Delucs
[[Category:Software]]

3 KB (301 words) - 14:35, 15 August 2022
BlobTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:15, 6 December 2019
Openstructure
[[Category:Software]][[Category:Biology]] If you like our software and have used it in your research project, please cite the following paper

3 KB (403 words) - 23:35, 6 February 2023
ALLPATHS-LG
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}

2 KB (299 words) - 12:36, 12 August 2022
RepeatAnalysis
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (238 words) - 14:34, 26 August 2020
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
Seq-Gen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://tree.bio.ed.ac.uk/software/seqgen/}}

3 KB (351 words) - 17:58, 10 June 2022
Cvbio
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 13:11, 21 October 2020
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
ATRAM
[[Category:Software]][[Category:Math]]

3 KB (350 words) - 15:23, 12 August 2022
VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 15:53, 21 June 2023
Spyder
[[Category:Software]][[Category:Programming]]

3 KB (350 words) - 18:56, 21 August 2022
PBCCS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:07, 21 August 2022
SIGffRid
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:17, 1 June 2022
Leafaudio
[[Category:Software]][[Category:Audio]][[Category:Machine Learning]]

2 KB (288 words) - 19:49, 15 August 2022
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
Tapir
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 16:40, 10 June 2022
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
AMPtk
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (289 words) - 12:41, 12 August 2022
MitoPhAST
[[Category:Software]][[Category:Phylogenetics]]

3 KB (382 words) - 14:27, 23 April 2020
Vamb
[[Category:Software]]

3 KB (302 words) - 18:59, 1 February 2021
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
OPENACC
[[Category:Software]][[Category:Programming]]

2 KB (291 words) - 12:01, 26 August 2022
RDnaTools
[[Category:Software]][[Category:Phylogenetics]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (361 words) - 21:24, 6 December 2019
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
SOAPec
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (322 words) - 17:14, 10 June 2022
CPAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:34, 10 June 2022
Stumpy
[[Category:Software]][[Category:Workflow Automation]] ...calable Python Library for Time Series Data Mining. Journal of Open Source Software, 4(39), 1504.

3 KB (430 words) - 15:16, 13 April 2023
Applications
[[Category:Software]]

1 KB (138 words) - 13:26, 27 September 2022
OpenNeuro
[[Category:Software]][[Category:Data Science]][[Category:Biology]]

2 KB (248 words) - 17:56, 19 August 2022
SibeliaZ
[[Category:Software]]

2 KB (284 words) - 20:40, 12 August 2022
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
HPL
[[Category:Software]][[Category:Programming]][[Category:Performance Analysis]]

2 KB (255 words) - 12:01, 26 August 2022
MitoFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:23, 6 December 2019
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
YASRA
[[Category:Software]] [[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (304 words) - 20:56, 12 August 2022
FSA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 20:38, 23 May 2022
Nt
[[Category:Software]]

2 KB (262 words) - 14:38, 15 July 2022
COLMAP
[[Category:Software]][[Category:Modeling]] ...eatures for reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license. If you use this project for your res

2 KB (290 words) - 16:53, 6 June 2022
Clover
[[Category:Software]]

2 KB (296 words) - 13:47, 15 August 2022
GSNP
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://jil.genomics.org.cn/index.php/en/software/gsnp.html}}

3 KB (459 words) - 17:27, 15 August 2022
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
MCR
[[Category:Software]][[Category:Math]][[Category:Language]] ...TLAB Runtime enable you to create and distribute numerical applications or software components quickly and securely.

2 KB (292 words) - 18:06, 3 June 2022
ASHS
[[Category:Software]][[Category:Biology]][[Category:imaging]] ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. A

3 KB (353 words) - 20:32, 24 August 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
Gapseq
[[Category:Software]][[Category:Chemistry]][[Category:Biology]]

2 KB (252 words) - 14:22, 11 October 2022
Genblastg
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (306 words) - 18:19, 5 February 2024
Omniverse
[[Category:Software]][[Category:Library]][[Category:Math]]

7 KB (983 words) - 14:48, 25 July 2023
FMRIPrep
[[Category:Software]][[Category:Data Mining]]

2 KB (288 words) - 16:47, 17 October 2023
Detectron2
[[Category:Software]][[Category:Library]]

3 KB (295 words) - 19:33, 15 July 2021
Nvidia CUDA Toolkit
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Graphics]][[Categor ...cs processing unit (GPU). With millions of CUDA-enabled GPUs sold to date, software developers, scientists and researchers are finding broad-ranging uses for G

4 KB (543 words) - 13:44, 20 November 2023
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
Mega2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
Fusion twas
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:27, 26 May 2022
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
Valouev
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (252 words) - 21:29, 6 December 2019
Sim4
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (302 words) - 20:41, 12 August 2022
LAPACK
[[Category:Software]][[Category:Library]][[Category:Programming]][[Category:Compiler]] LAPACK is a standard software library for numerical linear algebra. It provides routines for solving syst

2 KB (286 words) - 17:43, 15 August 2022
GenomeThreader
[[Category:Software]][[Category:phylogenetics]] GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions

3 KB (315 words) - 16:35, 29 November 2021
NCL
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

3 KB (329 words) - 20:05, 24 August 2022
Trimmomatic
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (522 words) - 20:52, 12 August 2022
MinPath
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (317 words) - 21:22, 6 December 2019
Torch-geometric
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 19:43, 1 June 2022
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
MNEtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 16:13, 6 June 2022
BppSuite
[[Category:Software]][[Category:Genomics]]

2 KB (248 words) - 15:37, 9 December 2022
SAMStat
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (429 words) - 20:34, 12 August 2022
Singularity
[[Category:Software]][[Category:Workflow Automation]]

3 KB (410 words) - 21:30, 6 February 2023
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
Aria2
[[Category:Software]][[Category:Utility]]

3 KB (326 words) - 14:05, 17 September 2020
Comp-D MPI
[[Category:Software]][[Category:Statistics]]

2 KB (264 words) - 16:54, 9 June 2022
Bowtie2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (465 words) - 14:48, 14 December 2022
Wtdbg
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 17:44, 22 August 2022
Gerbil
[[Category:Software]][[Category:Phylogenetics]] ...hat is specialized for high effiency when counting k-mers for large k. The software is decribed here.

3 KB (320 words) - 14:34, 3 January 2020
Blast2GO
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

6 KB (920 words) - 14:08, 16 March 2023
BIOMART
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (310 words) - 18:16, 12 August 2022
Matlab
[[Category:Software]][[Category:Language]][[Category:Math]] |{{#vardefine:exe|1}} 

9 KB (1,361 words) - 16:06, 28 November 2023
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
Skmer
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
ITK-SNAP
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] SNAP is a software application used to segment structures in 3D medical images. It provides se

3 KB (397 words) - 19:23, 12 August 2022
NUPACK
[[Category:Software]][[Category:Phylogenetics]] NUPACK is a software suite for the analysis and design of nucleic acid structures, devices, and

2 KB (263 words) - 21:22, 6 December 2019
PSMC
[[Category:Software]][[Category:Phylogenetics]] This software package infers population size history from a diploid sequence

2 KB (263 words) - 14:01, 28 February 2020
VARI
[[Category:Software]][[Category:math]][[Category:visualization]]

2 KB (248 words) - 14:10, 11 October 2022
MITE-Hunter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (250 words) - 15:05, 10 June 2022
Pipe-clip
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 21:22, 6 December 2019
Counterr
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:15, 6 December 2019
PyHIST
[[Category:Software]]

4 KB (567 words) - 16:12, 22 December 2022
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
Tantan
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (280 words) - 19:04, 1 June 2022
AutoDock-GPU
[[Category:Software]][[Category:Chemistry]]

3 KB (332 words) - 15:25, 12 August 2022
Category:Molecular Dynamics
[[Category:Software]]

16 members (0 subcategories, 0 files) - 15:38, 19 August 2022
Rapidtide
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 13:58, 7 May 2020
Simka
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 19:25, 18 February 2021
SOAPdenovo-Trans
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (283 words) - 00:05, 22 August 2022
Gflags
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (291 words) - 17:07, 15 August 2022
HMM-FRAME
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
MHAP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (270 words) - 16:15, 10 June 2022
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
DSK
[[Category:Software]][[Category:Biology]][[Category:NGS]] DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory

3 KB (315 words) - 17:17, 10 June 2022
Zstd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 17:55, 22 August 2022
PROVEAN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa

3 KB (350 words) - 20:27, 12 August 2022
Compacta
[[Category:Software]] Compacta is a software designed to reduce the number of contigs given by

3 KB (294 words) - 13:52, 15 August 2022
AmPEPpy
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 14:13, 22 April 2021
Resistify
[[Category:Software]]

2 KB (264 words) - 16:44, 6 February 2024
INLA
[[Category:Software]][[Category:statistics]][[Category:modeling]][[Category:Programming]]

2 KB (236 words) - 12:20, 26 August 2022
WoLFPSort
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 21:29, 6 December 2019
MAGeCKFlute
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 20:24, 15 August 2022
WGS Assembler
[[Category:Software]][[Category:biology]][[Category:genomics]] Celera Assembler : scientific software for biological research. Celera Assembler is a de novo whole-genome shotgun

3 KB (359 words) - 20:56, 12 August 2022
Pathoscope
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

3 KB (323 words) - 17:02, 21 August 2022
Rosetta
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]] Rosetta is the premier software suite for modeling macromolecular

3 KB (302 words) - 20:37, 10 June 2022
DeepGS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:21, 26 August 2020
Lazypipe
[[Category:Software]]

4 KB (507 words) - 16:54, 14 December 2022
Metabin
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

4 KB (588 words) - 19:25, 18 August 2022
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
METIS
[[Category:Software]][[Category:Utility]]

2 KB (247 words) - 19:40, 18 August 2022
Moses
[[Category:Software]]

3 KB (381 words) - 15:15, 17 October 2022
SICER
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software.htm}}

2 KB (279 words) - 16:35, 10 June 2022
Category:Workflow Automation
[[Category:Software]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
Cowast
Coupled Ocean-Atmosphere-Wave-Sediment Trnaspost (COWAST) is public domain software developed by the United States Geological Services. The COWAST modeling sys ...urning on the HDF5 support. The build_coawst.sh, configures and builds the software, and the binary coawstM is installed in the top-level directory.

3 KB (443 words) - 13:28, 27 March 2024
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
Graftm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 22:16, 27 August 2020
ParlAI
[[Category:Software]][[Category:Phylogenetics]] title={ParlAI: A Dialog Research Software Platform},

3 KB (301 words) - 15:55, 21 July 2021
BamBam
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://udall-lab.byu.edu/Research/Software/BamBam.aspx}}

3 KB (456 words) - 18:00, 12 August 2022
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
Mugsy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (298 words) - 21:22, 6 December 2019
SMR
[[Category:Software]] |{{#vardefine:url|https://cnsgenomics.com/software/smr/#Overview}}

3 KB (362 words) - 18:27, 19 August 2021
VCF-kit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 17:26, 22 August 2022
TGICL
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://compbio.dfci.harvard.edu/tgi/software/}}

3 KB (340 words) - 20:47, 12 August 2022
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
Mamba
[[Category:Software]]

3 KB (429 words) - 20:16, 3 June 2022
Nextclade
[[Category:Software]]

2 KB (260 words) - 19:03, 12 January 2023
CovNMR
[[Category:Software]][[Category:Biology]]

3 KB (350 words) - 15:55, 23 August 2022
Pymesh
[[Category:Software]]

2 KB (271 words) - 16:09, 9 March 2023
Mosdepth
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:23, 6 December 2019
Sampledock
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (253 words) - 17:59, 15 August 2022
ImageMagick
[[Category:Software]][[Category:Imaging]] ImageMagick® is a software suite to create, edit, compose, or convert bitmap images. It can read and w

3 KB (380 words) - 18:46, 15 August 2022
AfterQC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (341 words) - 21:19, 6 December 2019
Rapidsai
[[Category:Software]][[Category:Data Science]] The RAPIDS suite of open source software libraries and APIs gives you the ability to execute end-to-end data science

3 KB (348 words) - 21:29, 21 August 2022
ABySS
[[Category:Software]][[Category:Biology]][[Category:De Novo]] |{{#vardefine:url|http://www.bcgsc.ca/platform/bioinfo/software/abyss}}

2 KB (315 words) - 16:17, 19 August 2022
Pycoqc
[[Category:Software]] ...ive quality control for Oxford Nanopore Sequencing. Journal of Open Source Software, 4(34), 1236, https://doi.org/10.21105/joss.01236

3 KB (309 words) - 13:55, 21 October 2022
Opennmt-py
[[Category:Software]][[Category:Language]][[Category:Machine_Learning]]

2 KB (272 words) - 20:14, 6 April 2023
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
Assemblytics
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 17:02, 29 September 2020
Plotsr
[[Category:Software]]

2 KB (271 words) - 20:00, 5 August 2022
Geant4
[[Category:Software]][[Category:Physics]]

3 KB (416 words) - 19:34, 30 November 2022
Ufraw
[[Category:Software]][[Category:Data Mining]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (316 words) - 14:45, 6 June 2022
Brewery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:40, 24 January 2020
PASA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (687 words) - 21:04, 4 January 2023
CNV-Seq
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 13:50, 15 August 2022
MMvec
[[Category:Software]][[Category:Chemistry]]

2 KB (238 words) - 20:51, 18 August 2022
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
Fslmrs
[[Category:Software]][[Category:Spectroscopy]][[Category:Chemistry]] ...ingle voxel and multi-voxel (MRSI) datasets. FSL-MRS is part of FSL (FMRIB Software Library).

3 KB (293 words) - 16:50, 15 August 2022
CRISPResso2
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]][[Category:Biology]] CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome ed

2 KB (282 words) - 13:25, 11 October 2022
Elastix
[[Category:Software]][[Category:Phylogenetics]] ...on the well-known Insight Segmentation and Registration Toolkit (ITK). The software consists of a collection of algorithms that are commonly used to solve (med

3 KB (365 words) - 15:30, 3 June 2022
FastqPuri
[[Category:Software]][[Category:Phylogenetics]] Software and source code of FastqPuri. It creates quality reports of fastq files and

2 KB (272 words) - 15:29, 19 January 2021
Platon
[[Category:Software]] <code>Robertson J., Nash J. H. E. (2018) MOB-suite: Software Tools for Clustering, Reconstruction and Typing of Plasmids From Draft Asse

4 KB (437 words) - 17:14, 14 December 2022
Pdb2pqr
[[Category:Software]][[Category:Biology]][[Category:modeling]]

3 KB (336 words) - 17:51, 15 August 2022
SMRT-SV
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (340 words) - 00:03, 22 August 2022
SplAdder
[[Category:Software]][[Category:Phylogenetics]] ...lternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized format

3 KB (304 words) - 15:50, 22 August 2022
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
Crest
[[Category:Software]]

3 KB (320 words) - 16:16, 24 April 2023
Lrgapcloser
[[Category:Software]][[Category:Biology]]

3 KB (326 words) - 19:30, 12 August 2022
Installing Personal Python Modules
[[Category:Python]][[Category:Software]] ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt

2 KB (243 words) - 14:51, 10 February 2023
Graph-tool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 17:20, 15 August 2022
NewTargets
[[Category:Software]]

3 KB (379 words) - 20:06, 12 August 2022
SIFT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 20:40, 12 August 2022
Ncftp
[[Category:Software]][[Category:File Management]]

2 KB (256 words) - 13:54, 21 October 2022
Seqwish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (347 words) - 21:24, 6 December 2019
Category:Astronomy
[[Category:Software]]

9 members (0 subcategories, 0 files) - 16:17, 3 June 2022
MAnorm
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (370 words) - 14:07, 27 May 2022
CGView
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 19:39, 23 May 2022
QUAST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (361 words) - 21:01, 21 August 2022
Blackfynn
[[Category:Software]][[Category:Data Mining]]

2 KB (280 words) - 19:12, 27 May 2022
Smudgeplot
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 15:19, 4 May 2021
DTI-TK
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

3 KB (311 words) - 18:51, 12 August 2022
WDSSII
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (299 words) - 20:05, 24 August 2022
Ltr finder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (416 words) - 20:21, 15 August 2022
Autometa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (300 words) - 21:19, 6 December 2019
PyCogent
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (275 words) - 17:20, 1 June 2022
V-Phaser
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (390 words) - 20:07, 27 May 2022
Flopp
[[Category:Software]][[Category:Biology]][[Category:Population Biology]] flopp is a software package for single individual haplotype phasing of polyploid organisms from

2 KB (286 words) - 18:35, 1 December 2023
Vim
[[Category:Software]][[Category:Programming]][[Category:Language]]

3 KB (320 words) - 18:56, 21 August 2022
ELPA
[[Category:Software]][[Category:Math]][[Category:Library]][[Category:Compiler]]

2 KB (290 words) - 14:58, 15 August 2022
MTR
[[Category:Software]]

2 KB (245 words) - 14:03, 23 June 2021
QT
[[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} 

2 KB (257 words) - 20:57, 21 August 2022
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
Arcashla
[[Category:Software]]

2 KB (250 words) - 19:33, 24 July 2023
Vibrant
[[Category:Software]][[Category:Genomics]]

3 KB (333 words) - 17:36, 15 August 2022
Category:Image Processing
[[Category:Software]]

14 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Svtyper
[[Category:Software]]

3 KB (360 words) - 14:04, 3 October 2022
Fastv
[[Category:Software]][[Category:Bioinformatics]][[Category:Sequencing]]

3 KB (327 words) - 20:08, 19 April 2024
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
SimNIBS
[[Category:Software]][[Category:Phylogenetics]] SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation. It allows for

3 KB (324 words) - 18:04, 28 August 2020
Hal
[[Category:Software]][[Category:Phylogenetics]]

3 KB (366 words) - 18:11, 15 August 2022
TotalView
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (335 words) - 12:02, 26 August 2022
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
Necklace
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ovo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resultin

3 KB (312 words) - 21:22, 6 December 2019
LIBXSMM
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (257 words) - 17:46, 15 August 2022

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