Search results

ASTRAL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

3 KB (415 words) - 15:08, 12 August 2022
ARKS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:15, 6 December 2019
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
Deepmicrobes
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Machine Learning]]

2 KB (240 words) - 14:33, 15 August 2022
FreeBayes
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (302 words) - 18:55, 12 August 2022
Unrar
[[Category:Software]][[Category:utility]]

2 KB (239 words) - 19:16, 3 June 2022
InParanoid
[[Category:Software]][[Category:Biology]]

2 KB (236 words) - 19:20, 12 August 2022
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
GCE
[[Category:Software]]

3 KB (311 words) - 18:57, 12 August 2022
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
Parallel
[[Category:Software]][[Category:Shell]][[Category:Workflow Automation]] |{{#vardefine:url|http://www.gnu.org/software/parallel/}}

3 KB (334 words) - 16:46, 21 August 2022
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
GROCSVs
[[Category:Software]][[Category:Phylogenetics]] Genome-wide Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequen

2 KB (274 words) - 21:21, 6 December 2019
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
Jasper
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (354 words) - 16:42, 14 December 2023
Pybedtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 13:31, 6 October 2021
ProbABEL
[[Category:Software]][[Category:Genomics]][[Category:Biology]] ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quanti

3 KB (371 words) - 19:35, 21 August 2022
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
The silver searcher
[[Category:Software]][[Category:Search]]

2 KB (248 words) - 14:33, 29 June 2021
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
Probalign
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (349 words) - 19:36, 21 August 2022
MET
[[Category:Software]]

3 KB (365 words) - 20:04, 24 August 2022
Evigene
[[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl

3 KB (372 words) - 21:21, 6 December 2019
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
MISO
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (390 words) - 20:44, 18 August 2022
PDA
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/pda/}}

3 KB (294 words) - 21:23, 6 December 2019
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
Panseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:12, 17 November 2021
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
Rnalysis
[[Category:Software]] RNAlysis is a Python-based software for analyzing RNA sequencing data. RNAlysis allows you to build customized

5 KB (648 words) - 16:12, 25 April 2023
Python Modules
[[Category:Software]]

415 bytes (50 words) - 20:40, 5 April 2018
Category:Scheduler Apps
[[Category:Scheduler]][[Category:Software]]

3 members (0 subcategories, 0 files) - 18:29, 11 November 2022
MCNP
[[Category:Software]][[Category:Physics]] ...message from RSICC’s Request History tool that contains a list all of the software for which you have been licensed to the [[Remote_Support#Email|User Support

3 KB (422 words) - 21:39, 4 April 2024
NCBI C++ Toolkit
[[Category:Software]][[Category:Biology]][[Category:programming]][[Category:library]][[Category

3 KB (306 words) - 14:25, 19 August 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
Inspector
[[Category:Software]][[Category:biology]][[Category:Genomics]]

3 KB (319 words) - 18:50, 15 August 2022
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
Category:Mapping
[[Category:Software]]

8 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Merlin
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (264 words) - 12:56, 15 August 2022
ASE-ANI
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (303 words) - 14:55, 12 August 2022
Samblaster
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (296 words) - 22:03, 21 August 2022
Oases
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (293 words) - 17:25, 19 August 2022
LTRRetriever
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (255 words) - 21:21, 6 December 2019
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
Pytorch
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (257 words) - 15:56, 6 June 2022
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
Cogent
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:06, 6 December 2019
Category:Geospatial
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
DynamicDBG
[[Category:Software]][[Category:Phylogenetics]] ...membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and n

3 KB (312 words) - 21:20, 6 December 2019
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
MiXCR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire seq

3 KB (340 words) - 21:22, 6 December 2019
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
DeepLabCut
[[Category:Software]][[Category:Phylogenetics]]

3 KB (385 words) - 21:20, 6 December 2019
MCarts
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (399 words) - 14:53, 14 December 2022
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
CLIFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:11, 6 December 2019
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
Momi
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (305 words) - 19:03, 4 April 2022
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
Uproc
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (418 words) - 20:53, 12 August 2022
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
TreeShrink
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:29, 6 December 2019
AI Help
== AI Software == A comprehensive software stack for AI research is available on HiPerGator for both CPU and GPU accel

6 KB (870 words) - 17:17, 22 April 2024
Ncview
[[Category:Software]][[Category:Visualization]] |{{#vardefine:exe|}} 

2 KB (317 words) - 14:42, 19 August 2022
Filtlong
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (299 words) - 21:20, 6 December 2019
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
Nanostripper
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (250 words) - 21:15, 13 May 2022
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Seq crumbs
[[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category ...th Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

3 KB (328 words) - 15:12, 27 May 2022
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
Hacdivsel
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (280 words) - 22:20, 10 October 2022
Jupyter Notebooks
[[Category:Software]][[Category:Python]][[Category:Machine Learning]] __NOTOC__

18 KB (2,983 words) - 18:58, 23 March 2023
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
MELTING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the

3 KB (306 words) - 19:50, 12 August 2022
Starseqr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 17:12, 31 May 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
Stable-diffusion
[[Category:Software]][[Category:Machine Learning]]

2 KB (245 words) - 17:04, 31 January 2023
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022
Breakseq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:15, 6 December 2019
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
Srst2
[[Category:Software]]

2 KB (278 words) - 17:42, 13 December 2022
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
Deepcoil
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (241 words) - 18:49, 12 August 2022
HOMER
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (330 words) - 18:19, 15 August 2022
GTDBTk
[[Category:Software]][[Category:Phylogenetics]] GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and

3 KB (299 words) - 15:08, 12 April 2022
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Scikit-learn
[[Category:Software]][[Category:Data_Science]]

2 KB (272 words) - 21:23, 6 March 2024
Consed
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 18:39, 12 August 2022
ESOM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (242 words) - 15:08, 15 August 2022
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
MuSE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (333 words) - 13:23, 19 July 2021
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
Synima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (313 words) - 20:34, 27 May 2022
SST-Core Install
[[SST-Core|Back to SST-Core page]][[Category:Software]]

1 KB (195 words) - 14:50, 16 August 2017
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
SpliceTrap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (347 words) - 20:44, 12 August 2022
NONMEM
[[Category:Software]][[Category:Modeling]]

3 KB (439 words) - 21:23, 6 December 2019
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
SE-MEI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 22:30, 21 August 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023

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