Search results

TrackVis/DTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]] TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imag

3 KB (418 words) - 14:56, 18 October 2022
Simulia
[[Category:Software]][[Category:Simulation]][[Category:Visualization]]

2 KB (252 words) - 18:23, 1 June 2022
Poretools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:50, 21 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
BIDSCOIN
[[Category:Software]][[Category:Neuroscience]]

2 KB (263 words) - 15:20, 14 March 2023
Illumiprocessor
[[Category:Software]][[Category:Phylogenetics]]

4 KB (452 words) - 18:44, 15 August 2022
Cluster3
[[Category:Software]][[Category:Biology]][[Category:Genomics]] The open source clustering software available here implement the most commonly used clustering methods for gene

2 KB (274 words) - 18:37, 12 August 2022
Mfannot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
Schrodinger Suite
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (257 words) - 15:30, 19 August 2022
PartitionFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (402 words) - 16:57, 21 August 2022
Xwalk
[[Category:Software]]

3 KB (345 words) - 16:47, 28 February 2023
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Snpflip
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (247 words) - 00:05, 22 August 2022
Bubbleparse
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (246 words) - 14:43, 10 June 2022
SeqMap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (373 words) - 22:35, 21 August 2022
MSINGS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:21, 6 December 2019
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
GraPhlAn
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and p

2 KB (284 words) - 21:21, 6 December 2019
Forecasting
[[Category:Software]]

3 KB (308 words) - 14:41, 27 January 2023
SHEsisPlus
[[Category:Software]][[Category:Biology]][[Category:Genomics]] SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, li

3 KB (344 words) - 15:04, 19 August 2022
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Mashtree
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762]

2 KB (280 words) - 13:30, 15 August 2022
DDocent
[[Category:Software]][[Category:Phylogenetics]]

2 KB (311 words) - 14:29, 15 August 2022
METAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (426 words) - 19:27, 18 August 2022
LocusZoom
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 21:21, 6 December 2019
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
GapCloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (264 words) - 16:52, 15 August 2022
GrADS
[[Category:Software]][[Category:Geospatial]][[Category:Math]]

3 KB (334 words) - 20:26, 24 August 2022
DeepTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (360 words) - 14:35, 15 August 2022
AWSCLI
[[Category:Software]][[Category:Utility]]

2 KB (267 words) - 15:26, 12 August 2022
Minced
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (263 words) - 15:38, 10 June 2022
Coreutils
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/coreutils/}}

2 KB (301 words) - 14:09, 15 August 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
Genesum
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (277 words) - 21:21, 6 December 2019
Biodiverse
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 6 December 2019
Libunistring
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.gnu.org/software/libunistring/}}

2 KB (269 words) - 15:49, 10 June 2022
3PCLR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (307 words) - 20:35, 11 August 2022
Graphaligner
[[Category:Software]][[Category:Genomics]]

2 KB (262 words) - 21:48, 12 January 2023
DEXTRACTOR
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (441 words) - 19:20, 10 June 2022
TransDecoder
[[Category:Software]][[Category:Biology]][[Category:NGS]] A log-likelihood score similar to what is computed by the GeneID software is > 0.

3 KB (371 words) - 16:54, 22 August 2022
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
TraCeR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:40, 22 August 2022
FastStructure
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (297 words) - 18:54, 12 August 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020
ProtHint
[[Category:Software]]

3 KB (329 words) - 20:27, 12 August 2022
Esmf
[[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli

2 KB (256 words) - 20:59, 22 September 2022
LEMON
[[Category:Software]][[Category:Library]]

2 KB (268 words) - 15:41, 6 June 2022
PB-Assembly
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] pb-assembly is a collection of PacBio software including the following applications and their dependencies:

2 KB (269 words) - 20:11, 24 August 2022
PyBSASeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (235 words) - 17:14, 1 June 2022
Chewbbaca
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (346 words) - 15:58, 20 October 2023
Flopp
[[Category:Software]][[Category:Biology]][[Category:Population Biology]] flopp is a software package for single individual haplotype phasing of polyploid organisms from

2 KB (286 words) - 18:35, 1 December 2023
Export2graphlan
export2graphlan is a conversion software tool for producing both

3 KB (314 words) - 15:12, 15 August 2022
Sim4
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (302 words) - 20:41, 12 August 2022
FDSTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:34, 27 August 2020
Catch
[[Category:Software]]

3 KB (422 words) - 18:23, 12 August 2022
Bwa-meth
[[Category:Software]]

2 KB (239 words) - 16:59, 24 August 2023
PAUP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.

2 KB (249 words) - 20:15, 12 August 2022
Newick utils
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 14:10, 1 September 2021
Msfinder
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] ...omputational MS/MS fragmentation and structure elucidation using MS-FINDER software. Analytical Chemistry 88, 7946-7958, 2016.]

3 KB (290 words) - 13:32, 19 August 2022
Category:De Novo
[[Category:Software]]

3 members (0 subcategories, 0 files) - 19:55, 22 August 2022
Fastv
[[Category:Software]][[Category:Bioinformatics]][[Category:Sequencing]]

3 KB (327 words) - 20:08, 19 April 2024
Last
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (342 words) - 19:29, 12 August 2022
Transrate
[[Category:Software]][[Category:Biology]][[Category:Assembly]] Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assem

3 KB (316 words) - 16:54, 22 August 2022
IsoSeq3
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (295 words) - 20:10, 24 August 2022
MONAI label
[[Category:Software]][[Category:Healthcare]]

3 KB (377 words) - 11:56, 19 August 2022
DL POLY
[[Category:Software]][[Category:Molecular Dynamics]] DL_POLY is a general purpose classical molecular dynamics (MD) simulation software developed at Daresbury Laboratory by I.T. Todorov and W. Smith.

2 KB (309 words) - 17:00, 6 June 2022
Kraken
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}

4 KB (483 words) - 19:28, 12 August 2022
Methylpy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 21:21, 6 December 2019
Ont fast5 api
[[Category:Software]][[Category:Phylogenetics]] Oxford Nanopore Technologies fast5 API software

2 KB (238 words) - 17:49, 19 August 2022
Resistome
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 21:46, 21 August 2022
Anvio
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:20, 12 August 2022
Seq-Gen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://tree.bio.ed.ac.uk/software/seqgen/}}

3 KB (351 words) - 17:58, 10 June 2022
Nuke
[[Category:Software]]

2 KB (277 words) - 13:47, 19 July 2023
CCMetagen
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 22:45, 3 January 2022
Nanocaller
[[Category:Software]]

3 KB (351 words) - 15:41, 16 March 2023
ASPECT
[[Category:Software]][[Category:Library]]

2 KB (285 words) - 15:16, 3 June 2022
Galaxy Data Import
...he 755 mode for the directory and 644 for the files either from within the software you used for transferring the files or by logging into HPC and running the

4 KB (644 words) - 17:24, 15 December 2022
Cammiq
[[Category:Software]][[Category:Biology]][[Category:Genomics]] CAMMiQ is a software tool for microbial identification and quantification.

2 KB (281 words) - 21:39, 14 June 2023
Repeatscout
[[Category:Software]][[Category:biology]]

2 KB (288 words) - 21:24, 6 December 2019
PsiCLASS
[[Category:Software]][[Category:Phylogenetics]]

4 KB (480 words) - 15:00, 14 December 2022
Tapir
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 16:40, 10 June 2022
Badread
[[Category:Software]][[Category:Phylogenetics]] ...RR. Badread: simulation of error-prone long reads. Journal of Open Source Software. 2019;4(36):1316. doi:10.21105/joss.01316.]

3 KB (363 words) - 20:47, 24 September 2020
Minia
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] It is multi-k, to aim for high contiguity. Similar software: MEGAHIT, metaSPAdes.

2 KB (285 words) - 13:31, 15 August 2022
IDBA-MT
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ased on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig leng

3 KB (315 words) - 21:21, 6 December 2019
LCModel
[[Category:Software]] ...maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-tes

4 KB (497 words) - 16:28, 15 December 2022
Nanolyse
[[Category:Software]]

2 KB (260 words) - 19:24, 7 September 2022
EggNOG-mapper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 19:29, 6 December 2021
Capnp
[[Category:Software]][[Category:Compiler]]

2 KB (288 words) - 13:20, 15 August 2022
ECE
[[Category:Software]][[Category:Physics]] Ece software container

3 KB (360 words) - 21:39, 3 March 2023
SOAPec
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (322 words) - 17:14, 10 June 2022
Nonpareil
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 15:48, 17 November 2020
Magus
[[Category:Software]][[Category:Sequencing]][[Category:Alignment]]

3 KB (327 words) - 17:51, 16 March 2022
Canu
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (358 words) - 14:26, 14 April 2020
MODELTEST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:18, 10 June 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Wgd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 19:52, 27 May 2022
PhyloSift
[[Category:Software]][[Category:biology]][[Category:genomics]][[Category:phylogenetics]] hyloSift is a suite of software tools to conduct phylogenetic

2 KB (255 words) - 15:45, 19 August 2022
Grf
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (278 words) - 17:21, 15 August 2022
Smartie-sv
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 18:30, 1 June 2022
Supernova
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]] |{{#vardefine:url|https://support.10xgenomics.com/de-novo-assembly/software/}}

3 KB (306 words) - 16:55, 10 June 2022
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
Category:Scheduler
[[Category:Categories]][[Category:Software]]

18 members (1 subcategory, 0 files) - 15:28, 23 August 2022
MOTU
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bork.embl.de/software/mOTU/}}

3 KB (328 words) - 12:00, 19 August 2022
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
Whiteboxtools
[[Category:Software]][[Category:Phylogenetics]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

3 KB (408 words) - 17:43, 22 August 2022
BPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software.html}}

2 KB (294 words) - 18:21, 12 August 2022
GlimmerHMM
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|http://ccb.jhu.edu/software/glimmerhmm/}}

3 KB (334 words) - 17:09, 15 August 2022
Plasflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (292 words) - 20:17, 31 May 2022
ESPRIT
[[Category:Software]][[Category:Biology]]

4 KB (460 words) - 15:10, 15 August 2022
Delly
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (291 words) - 16:46, 10 June 2022
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
Category:Visualization
[[Category:Software]][[Category:Data]]

19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
RAVE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (281 words) - 21:30, 21 August 2022
FSA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 20:38, 23 May 2022
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
Clover
[[Category:Software]]

2 KB (296 words) - 13:47, 15 August 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
MC
[[Category:Software]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/mc/}}

2 KB (269 words) - 21:22, 6 December 2019
MetaCompare
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 21:21, 6 December 2019
Visit
[[Category:Software]][[Category:Visualization]][[Category:Animation]]

3 KB (403 words) - 14:47, 15 March 2024
Relernn
[[Category:Software]]

2 KB (261 words) - 21:20, 6 February 2024
BFAST
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (276 words) - 18:16, 12 August 2022
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
Detectron2
[[Category:Software]][[Category:Library]]

3 KB (295 words) - 19:33, 15 July 2021
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
ProtExcluder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (329 words) - 21:22, 6 December 2019
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
CAFE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software for Computational Analysis of gene Family Evolution

3 KB (318 words) - 21:06, 6 December 2019
CisGenome
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (249 words) - 18:30, 12 August 2022
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
GenomeThreader
[[Category:Software]][[Category:phylogenetics]] GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions

3 KB (315 words) - 16:35, 29 November 2021
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
SeqKit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 21:24, 6 December 2019
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
Smalt
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] The software employs a hash index of short words of up to 20 nucleotides

3 KB (342 words) - 17:24, 3 June 2022
CMake
[[Category:Software]][[Category:Programming]] ...designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configur

3 KB (326 words) - 13:49, 15 August 2022
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
Faqcs
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (268 words) - 17:48, 18 May 2023
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Annocript
[[Category:Software]][[Category:Phylogenetics]] ...ormation about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by usi

3 KB (387 words) - 21:18, 6 December 2019
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
Pyani
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 19:44, 21 August 2022
WebLogo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Graphics]]

3 KB (417 words) - 17:40, 22 August 2022
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
BALi-Phy
[[Category:Software]][[Category:Phylogenetics]] '''BAli-phy''' is MCMC software developed by Ben Redelings with Marc Suchard for simultaneous Bayesian esti

3 KB (402 words) - 17:19, 14 December 2022
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
PolyPHen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PolyPhen-2 (Polymorphism Phenotyping v2) is a software tool which predicts possible impact of amino acid substitutions on the stru

3 KB (295 words) - 18:45, 27 May 2022
Dapars
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (306 words) - 20:05, 23 March 2023
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
CLIPSeqTools
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (303 words) - 20:30, 10 June 2022
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
MITObim
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 15:20, 22 April 2020
PRSice
[[Category:Software]][[Category:Phylogenetics]] PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic

2 KB (287 words) - 14:26, 1 February 2021
Ampligraph
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 14:44, 10 July 2023
Assembly-stats
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (293 words) - 14:56, 12 August 2022
Rainbowfish
[[Category:Software]][[Category:Phylogenetics]]

2 KB (233 words) - 19:18, 2 June 2022
IRFinder
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

2 KB (244 words) - 14:59, 10 June 2022
Stumpy
[[Category:Software]][[Category:Workflow Automation]] ...calable Python Library for Time Series Data Mining. Journal of Open Source Software, 4(39), 1504.

3 KB (430 words) - 15:16, 13 April 2023
Trinity
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA- |{{#vardefine:exe|1}} 

4 KB (556 words) - 17:10, 22 August 2022
Prokka
[[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.prokka.shtml}}

2 KB (297 words) - 19:41, 21 August 2022
AGAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (346 words) - 22:01, 15 July 2020
Arriba
[[Category:Software]][[Category:Phylogenetics]]

3 KB (363 words) - 14:07, 1 April 2021
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
TNTBLAST
[[Category:Software]][[Category:Biology]] TNTBLAST (ThermonucleotideBLAST) is a software program for searching a target database of nucleic acid sequences using an

3 KB (385 words) - 20:08, 2 June 2022
TRANSIT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:29, 6 December 2019
Mercurial
[[Category:Software]][[Category:Revision Control]]

2 KB (253 words) - 19:59, 10 June 2022
Talon
[[Category:Software]]

3 KB (321 words) - 15:13, 23 September 2022
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
Intervene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (295 words) - 21:21, 6 December 2019
Pathoscope
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

3 KB (323 words) - 17:02, 21 August 2022
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
CutRunTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 22:20, 26 August 2020
Lazypipe
[[Category:Software]]

4 KB (507 words) - 16:54, 14 December 2022
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
MIRA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (313 words) - 20:42, 18 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
Category:Variant Calling
[[Category:Software]][[Category:Biology]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
RFAA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...abases and structure templates as well as required dependencies to run the software. However, users should download the contents of the repo locally to run the

3 KB (323 words) - 16:56, 27 March 2024
R
[[Category:Software]][[Category:Statistics]][[Category:Programming]] |{{#vardefine:exe|1}} 

6 KB (981 words) - 20:45, 16 October 2023
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
GRACKLE
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Astronomy]]

2 KB (294 words) - 17:18, 15 August 2022
ParlAI
[[Category:Software]][[Category:Phylogenetics]] title={ParlAI: A Dialog Research Software Platform},

3 KB (301 words) - 15:55, 21 July 2021
BayArea
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 15:02, 10 June 2022
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
LMAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (330 words) - 20:03, 15 August 2022
Category:Assembly
[[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.

20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Toil
[[Category:Software]][[Category:biology]]

2 KB (258 words) - 20:47, 12 August 2022
MUSCLE
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|}} 

2 KB (313 words) - 19:55, 12 August 2022
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
Macaulay2
[[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry

2 KB (246 words) - 20:23, 15 August 2022
Nextclade
[[Category:Software]]

2 KB (260 words) - 19:03, 12 January 2023
StringMLST
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (292 words) - 20:45, 12 August 2022
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
Dcmstack
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (272 words) - 14:29, 15 August 2022
Mxnet
[[Category:Software]][[Category:healthcare]]

2 KB (265 words) - 22:02, 10 October 2022
Uropa
[[Category:Software]]

3 KB (337 words) - 15:42, 6 September 2022
QIIME
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

4 KB (555 words) - 15:15, 19 August 2022
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
SourceTracker2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 14:19, 14 September 2020
Comp-D MPI
[[Category:Software]][[Category:Statistics]]

2 KB (264 words) - 16:54, 9 June 2022
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
BayesAss
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 21:13, 6 December 2019
BOLT-LMM
[[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f

2 KB (289 words) - 16:24, 2 January 2020
Blitz
[[Category:Software]][[Category:Library]]

3 KB (303 words) - 21:19, 6 December 2019
QOS Limits
CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s

4 KB (598 words) - 03:35, 26 February 2023
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
PBCCS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:07, 21 August 2022
Skmer
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
MMSEQ
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (387 words) - 20:50, 18 August 2022
FastANI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (380 words) - 21:21, 6 December 2019
MongoDB
[[Category:Software]][[Category:Database]]

3 KB (340 words) - 19:22, 11 February 2021
Flex
[[Category:Software]][[Category:Programming]]

2 KB (266 words) - 19:54, 3 June 2022
PhyML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (465 words) - 20:22, 12 August 2022
REPdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (327 words) - 21:43, 21 August 2022
AutoDock-GPU
[[Category:Software]][[Category:Chemistry]]

3 KB (332 words) - 15:25, 12 August 2022
Bsoft
[[Category:Software]][[Category:Biology]][[Category:Image Processing]] Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in struc

2 KB (297 words) - 13:14, 15 August 2022
RSEM
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data

3 KB (390 words) - 21:59, 21 August 2022
Knime
[[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an

3 KB (318 words) - 14:46, 9 June 2023
DSRC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 14:27, 17 February 2021
GEOS
[[Category:Software]][[Category:Library]][[Category:Data Science]]

3 KB (307 words) - 17:05, 15 August 2022
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
MetaCluster
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (321 words) - 19:26, 18 August 2022
CIRCexplorer
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (308 words) - 18:29, 12 August 2022
Zstd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 17:55, 22 August 2022
Category:Compression
[[Category:Software]]

5 members (0 subcategories, 0 files) - 17:21, 3 June 2022
VEP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (270 words) - 17:28, 22 August 2022
Merqury
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 13:54, 12 August 2020
TGSGapCloser
[[Category:Software]][[Category:Phylogenetics]] A gap-closing software tool that uses error-prone long reads generated by third-generation-sequenc

3 KB (321 words) - 15:35, 20 April 2021
SALSA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (269 words) - 20:11, 24 August 2022

Search results

Navigation menu

Search