Search results

PRANK
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (271 words) - 20:25, 12 August 2022
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
Apptainer
[[Category:Software]][[Category:Workflow Automation]] or even create a shell in the software environment provided by the container with

4 KB (609 words) - 16:30, 12 February 2024
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
RagTag
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 15:27, 13 August 2020
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Intel MPI
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]] |{{#vardefine:url|https://software.intel.com/en-us/intel-mpi-library}}

3 KB (297 words) - 12:01, 26 August 2022
Shasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (402 words) - 21:24, 6 December 2019
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
Consulting
* Get priority help with software, hardware, coding, or architecture

2 KB (378 words) - 18:33, 13 June 2023
W2rap-contigger
[[Category:Software]][[Category:biology]][[Category:genomics]]

2 KB (246 words) - 21:29, 6 December 2019
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022
Mikado
[[Category:Software]]

4 KB (495 words) - 19:45, 18 August 2022
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
DeFusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:22, 26 August 2020
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
MIGRATE-N
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:exe|1}} 

5 KB (636 words) - 16:05, 22 December 2022
Ctk
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (297 words) - 16:53, 10 October 2022
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
LRBinner
[[Category:Software]]

5 KB (527 words) - 14:45, 14 December 2022
Category:Performance Analysis
[[Category:Software]]

10 members (0 subcategories, 0 files) - 19:52, 22 August 2022
Shustring
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (237 words) - 14:55, 10 June 2022
Yolov5
[[Category:Software]][[Category:Machine Learning]]

2 KB (289 words) - 23:52, 31 January 2023
Gaussian License
[[Category:Software]] * I am not a member of a research group developing software competitive to Gaussian.

1 KB (185 words) - 14:26, 30 June 2017
GSEA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...://www.pnas.org/content/102/43/15545.abstract To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subr

2 KB (298 words) - 17:27, 15 August 2022
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
PyPHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:24, 6 December 2019
GDrive
[[Category:Software]]

3 KB (400 words) - 20:03, 5 October 2023
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
GFF3toolkit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (335 words) - 20:48, 23 May 2022
Texlive
[[Category:Software]][[Category:Documentation]]

2 KB (267 words) - 16:34, 22 August 2022
MKL
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Programming]][[Category:Co |{{#vardefine:url|https://software.intel.com/en-us/mkl}}

3 KB (378 words) - 19:14, 24 August 2022
NPhase
[[Category:Software]]

2 KB (275 words) - 17:53, 15 August 2022
PRINSEQ
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (271 words) - 15:52, 10 June 2022
Mantis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (368 words) - 17:20, 27 May 2022
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
MetaPhlAn2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (319 words) - 19:28, 2 June 2022
NetCDF-F
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (269 words) - 16:36, 2 September 2022
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
Ncbi-genome-download
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (241 words) - 20:42, 7 February 2024
SInC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (278 words) - 21:24, 6 December 2019
Draft:UFRC Help and Documentation Tetris
'''Software and Reference Data''' | style="width: 7%; vertical-align: middle" | [[Image:Software.png|right|frameless|upright=0.3]]

6 KB (733 words) - 14:05, 30 March 2023
Kalign
[[Category:Software]]

2 KB (265 words) - 19:28, 12 August 2022
Appreci8
[[Category:Software]]

4 KB (561 words) - 14:25, 12 August 2022
AnnoTALE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:15, 17 September 2020
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
NucDiff
[[Category:Software]][[Category:Phylogenetics]] ...ral.com/articles/10.1186/gb-2004-5-2-r12 Kurtz S et al. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. doi 10.1186/gb-200

3 KB (315 words) - 21:22, 6 December 2019
AlphaMate
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphamate/}}

3 KB (338 words) - 13:46, 9 May 2023
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
BYOBU
[[Category:Software]][[Category:Shell]]

3 KB (313 words) - 19:50, 11 July 2022
Crux
[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden

2 KB (293 words) - 18:39, 12 August 2022
FASTRAL-constrained
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:25, 15 August 2022
PyDeface
[[Category:Software]][[Category:Imaging]]

2 KB (237 words) - 20:34, 24 August 2022
TaxonKit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:01, 13 December 2021
Category:Phylogenetics
[[Category:Biology]][[Category:Software]][[Category:Research]] Phylogenetics software and documentation

766 members (0 subcategories, 0 files) - 21:43, 24 October 2022
SOAPnuke
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:12, 6 April 2020
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
PDA
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/pda/}}

3 KB (294 words) - 21:23, 6 December 2019
CWLtool
[[Category:Software]][[Category:Workflow Automation]][[Category:Scheduler Apps]]

3 KB (326 words) - 18:29, 11 November 2022
PLAST
[[Category:Software]][[Category:Biology]] PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing

3 KB (320 words) - 20:23, 12 August 2022
Freyja
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]][[Category:Biology]]

2 KB (289 words) - 16:49, 15 August 2022
Rnalysis
[[Category:Software]] RNAlysis is a Python-based software for analyzing RNA sequencing data. RNAlysis allows you to build customized

5 KB (648 words) - 16:12, 25 April 2023
Category:RNA-Seq
[[Category:NGS]][[Category:Software]]

28 members (0 subcategories, 0 files) - 15:28, 23 August 2022
LongQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 14:52, 12 October 2021
MSMC-Tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 19:12, 9 June 2020
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
NCBI C++ Toolkit
[[Category:Software]][[Category:Biology]][[Category:programming]][[Category:library]][[Category

3 KB (306 words) - 14:25, 19 August 2022
NOVOPlasty
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:23, 6 December 2019
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
Pyroms
[[Category:Software]][[Category:Geospatial]]

2 KB (287 words) - 20:27, 24 August 2022
Category:Mapping
[[Category:Software]]

8 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Spacemake
[[Category:Software]][[Category:Sequencing]]

2 KB (249 words) - 22:12, 22 September 2022
Shortbred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:12, 24 November 2020
FastQC
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (382 words) - 15:25, 15 August 2022
Braker
[[Category:Software]][[Category:Phylogenetics]] https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker

2 KB (261 words) - 22:28, 26 August 2020
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
LTRRetriever
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (255 words) - 21:21, 6 December 2019
Saige
[[Category:Software]][[Category:Genomics]]

3 KB (297 words) - 19:29, 20 January 2023
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
MGLTools
[[Category:Software]] These software tools are highly integrated and based on reusable software

3 KB (357 words) - 17:03, 6 June 2022
Cogent
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:06, 6 December 2019
ROOT
[[Category:Software]][[Category:Data Science]]

3 KB (358 words) - 16:48, 21 August 2022
Nilearn
[[Category:Software]][[Category:Phylogenetics]]

2 KB (284 words) - 17:17, 19 August 2022
Stacks
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. St

4 KB (658 words) - 21:20, 2 January 2023
Embree
[[Category:Software]][[Category:Graphics]]

3 KB (343 words) - 15:01, 15 August 2022
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
Albacore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (258 words) - 21:10, 6 December 2019
Laneta
[[Category:Software]]

2 KB (253 words) - 19:29, 12 August 2022
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
Bamsnap
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 16:14, 27 May 2022
Numba
[[Category:Software]][[Category:Compiler]]

3 KB (353 words) - 20:44, 15 August 2022
PEAR
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.exelixis-lab.org/web/software/pear}}

3 KB (312 words) - 17:25, 21 August 2022
Isonclust2
[[Category:Software]]

3 KB (303 words) - 15:23, 28 October 2022
MSMBuilder
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

2 KB (288 words) - 16:38, 10 June 2022
XWAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (383 words) - 13:27, 31 August 2020
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
Vray
[[Category:Software]] |{{#vardefine:url|https://www.chaos.com/3d-rendering-software}}

3 KB (341 words) - 16:46, 6 April 2023
Processing
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Visualization]] ...within the context of the visual arts. Since 2001, Processing has promoted software literacy within the visual arts and visual literacy within technology. Ther

2 KB (285 words) - 12:12, 26 August 2022
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
File:Software.png
software icon for main menu...possibly

(500 × 500 (15 KB)) - 13:53, 24 June 2022

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