Search results

• DeNoGAP
  Denovo Genome Analysis Pipeline for Prokaryotic Species
  2 KB (272 words) - 21:20, 6 December 2019
• Genmap
  Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for
  2 KB (256 words) - 21:20, 17 May 2023
• EPACTS
  ...and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide associatio
  2 KB (269 words) - 18:52, 12 August 2022
• TPP
  The Sashimi project develops the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics:
  2 KB (266 words) - 20:22, 24 August 2022
• NPhase
  [[Category:Pipeline]]
  2 KB (275 words) - 17:53, 15 August 2022
• Connectomemapper3
  Connectome Mapper 3 implements a full diffusion MRI processing pipeline that understands BIDS datasets, from raw Diffusion / T1 / T2 data to multi-
  2 KB (269 words) - 13:55, 15 August 2022
• TAPIS
  TAPIS (Transriptome Analysis Pipeline from Isoform Sequencing) is a program for correcting and aligning long read
  2 KB (273 words) - 16:14, 10 June 2022
• Ezaai
  ...link.springer.com/article/10.1007%2Fs12275-021-1154-0 Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
  2 KB (282 words) - 15:13, 15 August 2022
• Shovill
  Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the pr
  2 KB (286 words) - 18:13, 23 August 2022
• Velocyto
  Velocyto includes a command line tool and an analysis pipeline
  2 KB (275 words) - 00:33, 25 May 2023
• Checkv
  CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identif
  2 KB (278 words) - 13:58, 18 October 2022
• GROCSVs
  ...Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequence assemb
  2 KB (274 words) - 21:21, 6 December 2019
• Dragonflye
  Dragonflye is a pipeline that aims to make assembling Oxford Nanopore reads quick and easy. Still wo
  2 KB (283 words) - 20:18, 12 April 2022
• Blast2GO CLI
  ...igh-performance and automatic functional annotation tasks. This Annotation Pipeline allows your to integrate and automate your functional annotation task in a
  2 KB (282 words) - 20:19, 24 August 2022
• PhyloFlash
  phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition o
  2 KB (279 words) - 00:09, 29 October 2020
• Seekdeep
  The SeekDeep pipeline is intended for use on targeted amplicon sequencing data for haplotype freq
  2 KB (281 words) - 17:03, 24 July 2023
• FMRIPrep
  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses
  2 KB (288 words) - 16:47, 17 October 2023
• Shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identify
  2 KB (287 words) - 16:12, 24 November 2020
• C-wap
  C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumin
  2 KB (281 words) - 13:16, 15 August 2022
• Fanc
  FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.
  2 KB (281 words) - 15:56, 22 March 2024
• CRISPResso2
  CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing exp
  2 KB (282 words) - 13:25, 11 October 2022
• Pggb
  This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation
  2 KB (287 words) - 19:56, 6 November 2020
• COLMAP
  ...a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of feat
  2 KB (290 words) - 16:53, 6 June 2022
• SibeliaZ
  construction pipeline. The blocks coordinates are output in GFF format and
  2 KB (284 words) - 20:40, 12 August 2022
• IRAP
  iRAP is a flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of exi
  2 KB (296 words) - 20:10, 24 August 2022
• Ciriquant
  CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
  2 KB (275 words) - 15:00, 30 March 2022
• FastPlast
  Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and
  2 KB (288 words) - 20:23, 23 May 2022
• Circompara2
  CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs f
  2 KB (283 words) - 21:36, 1 April 2022
• RiboTaper
  RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet p
  3 KB (293 words) - 13:48, 20 May 2020
• Autometa
  An automated binning pipeline for single metagenomes, in particular host-associated and highly complex on
  3 KB (300 words) - 21:19, 6 December 2019
• Galaxyml
  Galaxy-ML is a web machine learning end-to-end pipeline building framework, with special support to biomedical data.
  2 KB (284 words) - 14:51, 27 January 2023
• SeqyClean
  ...genome assembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that alleviates these issues.
  3 KB (312 words) - 22:41, 21 August 2022
• IAssembler
  ...sing Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers b
  3 KB (301 words) - 18:39, 15 August 2022
• MetaLAFFA
  MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances of functional ortho
  3 KB (305 words) - 13:52, 23 September 2021
• V-pipe
  ...onski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data.
  3 KB (296 words) - 17:20, 22 August 2022
• Bamtofastq
  ...l should contain the same set of sequences that were input to the original pipeline run, although the order will not be preserved. The FASTQs will be emitted i
  3 KB (318 words) - 13:56, 8 March 2021
• Popoolation
  PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation
  3 KB (321 words) - 21:23, 6 December 2019
• Tbprofiler
  The tbprofiler pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then
  3 KB (312 words) - 21:31, 10 February 2023
• SQANTI
  SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length trans
  3 KB (321 words) - 21:24, 6 December 2019
• ProtHint
  ProtHint is a pipeline for predicting and scoring hints (in the form of
  3 KB (329 words) - 20:27, 12 August 2022
• Roary
  Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seema
  3 KB (308 words) - 17:13, 10 June 2022
• REPdenovo
  ...ies, and can generate much longer repeats than existing tools. The overall pipeline is shown in the mannual file. REPdenovo supports the following main functio
  3 KB (327 words) - 21:43, 21 August 2022
• LongStitch
  A genome assembly correction and scaffolding pipeline using long reads, consisting of up to three steps:
  3 KB (314 words) - 19:00, 10 October 2022
• ContaVect
  ...s from gene therapy vector production after NGS sequencing. This automated pipeline can however be used for wider purpose requiring to identify map NGS dataset
  3 KB (309 words) - 20:40, 10 June 2022
• PBJelly
  PBJelly is a highly automated pipeline that aligns long sequencing reads
  3 KB (309 words) - 17:07, 21 August 2022
• REAPR
  ...eference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an asse
  3 KB (320 words) - 21:35, 21 August 2022
• Ampligraph
  An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
  3 KB (315 words) - 14:44, 10 July 2023
• Necklace
  ...bly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resulting transcr
  3 KB (312 words) - 21:22, 6 December 2019
• Pyrpipe
  ...pyrpipe_engine module to integrate any other third-party program in their pipeline.
  3 KB (311 words) - 15:22, 16 March 2020
• FEELnc
  This document is intended to give a technical description of the FEELnc pipeline in order to annotate long non-coding RNAs (lncRNAs) based on reconstructed
  3 KB (322 words) - 18:53, 10 July 2020

View (previous 50 | next 50) (20 | 50 | 100 | 250 | 500)