Search results

• Mutmap
  Pipeline to identify causative mutations responsible for a phenotype.
  2 KB (236 words) - 16:06, 21 June 2023
• Orthologer
  OrthoDB standalone pipeline for delineation of orthologs
  2 KB (238 words) - 20:03, 31 May 2022
• EnTAP
  Description: Eukaryote Non-Model Transcriptome Annotation Pipeline
  2 KB (236 words) - 21:20, 6 December 2019
• BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data.
  2 KB (238 words) - 14:40, 10 June 2022
• FRAMA
  Description: a transcriptome assembly and mRNA annotation pipeline
  2 KB (236 words) - 21:21, 6 December 2019
• Nullarbor
  Pipeline to generate complete public health microbiology reports from sequenced isol
  2 KB (241 words) - 19:38, 31 May 2022
• Scalpel
  Bioinformatics pipeline for discovery of genetic variants from NGS reads.
  2 KB (239 words) - 22:07, 21 August 2022
• LongRanger
  Phasing and SV Calling Pipeline
  2 KB (247 words) - 14:42, 10 June 2022
• SeCaPr
  A computational pipeline for processing Illumina sequence capture data
  2 KB (246 words) - 21:24, 6 December 2019
• AAFTF
  [[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]
  2 KB (245 words) - 20:45, 11 August 2022
• FlowCraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
  2 KB (246 words) - 14:18, 10 July 2020
• MAGeCKFlute
  MAGeCKFlute - Integrative analysis pipeline for pooled CRISPR functional genetic screens.
  2 KB (252 words) - 20:24, 15 August 2022
• Spacemake
  Spacemake: pipeline for processing and analysing sequencing based spatial-transcriptomics data
  2 KB (249 words) - 22:12, 22 September 2022
• MiRBShunter
  A pipeline to identify miRNA binding sites from Ago2-CLIP data by de novo motif findin
  2 KB (252 words) - 21:21, 6 December 2019
• CBGpipe
  This pipeline is designed to complete circular bacterial genomes using a sampling strateg
  2 KB (255 words) - 21:59, 26 August 2020
• Hyb
  Hyb is a bioinformatics pipeline for analysis of CLASH (crosslinking, ligation and sequencing of hybrids) da
  2 KB (247 words) - 15:07, 10 June 2022
• SqueezeMeta
  SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
  2 KB (255 words) - 15:47, 28 April 2022
• Rnaseqlib
  rnaseqlib is a simple, lightweight pipeline for RNA-Seq analysis.
  2 KB (247 words) - 15:15, 10 June 2022
• MAGeCK-VISPR
  MAGeCK-VISPR is a comprehensive quality control, analysis and visualization pipeline for CRISPR/Cas9 screens build on top of MAGeCK and VISPR.
  2 KB (251 words) - 20:21, 26 May 2022
• Hgtector
  HGTector is a computational pipeline for genome-wide detection of putative horizontal gene transfer (HGT) events
  2 KB (253 words) - 17:04, 10 October 2022
• MitoFinder
  Mitofinder is a pipeline to assemble mitochondrial genomes and extract mitochondrial genes from trim
  2 KB (255 words) - 21:23, 6 December 2019
• Quantas
  Quantas: A pipeline to analyze alternative splicing using RNA-Seq
  2 KB (247 words) - 20:29, 12 August 2022
• Varpipe-wgs
  This repository contains an analysis pipeline developed to characterize WGS output
  2 KB (261 words) - 16:22, 15 March 2023
• Mrtrix3tissue
  Improved bioinformatic pipeline to identify and quantify circRNA expression
  2 KB (255 words) - 16:51, 30 January 2023
• Toil
  Toil is a scalable, efficient, cross-platform pipeline management system, written entirely in Python, and designed around the prin
  2 KB (258 words) - 20:47, 12 August 2022
• Tapestri
  Pipeline developed by Mission Bio for the analysis of single-cell sequencing data in
  2 KB (258 words) - 19:07, 1 June 2022
• Merge peaks
  CWL-defined pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
  2 KB (254 words) - 18:51, 15 August 2022
• BIRDS
  ...r efficient, versatile mapping of mouse brain）is an open source automation pipeline suitable for brain data from different microscopy platforms.
  2 KB (263 words) - 13:01, 15 August 2022
• FLEA
  |{{#vardefine:url|https://github.com/veg/flea-pipeline}} FLEA is a bioinformatics pipeline for analyzing longitudinal sequencing data from the Pacific Biosciences RS-
  2 KB (260 words) - 22:01, 27 August 2020
• Braker
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneM
  2 KB (261 words) - 22:28, 26 August 2020
• DeNoGAP
  Denovo Genome Analysis Pipeline for Prokaryotic Species
  2 KB (272 words) - 21:20, 6 December 2019
• Genmap
  Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for
  2 KB (256 words) - 21:20, 17 May 2023
• EPACTS
  ...and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide associatio
  2 KB (269 words) - 18:52, 12 August 2022
• TPP
  The Sashimi project develops the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics:
  2 KB (266 words) - 20:22, 24 August 2022
• NPhase
  [[Category:Pipeline]]
  2 KB (275 words) - 17:53, 15 August 2022
• Connectomemapper3
  Connectome Mapper 3 implements a full diffusion MRI processing pipeline that understands BIDS datasets, from raw Diffusion / T1 / T2 data to multi-
  2 KB (269 words) - 13:55, 15 August 2022
• TAPIS
  TAPIS (Transriptome Analysis Pipeline from Isoform Sequencing) is a program for correcting and aligning long read
  2 KB (273 words) - 16:14, 10 June 2022
• Ezaai
  ...link.springer.com/article/10.1007%2Fs12275-021-1154-0 Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
  2 KB (282 words) - 15:13, 15 August 2022
• Shovill
  Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the pr
  2 KB (286 words) - 18:13, 23 August 2022
• Velocyto
  Velocyto includes a command line tool and an analysis pipeline
  2 KB (275 words) - 00:33, 25 May 2023
• Checkv
  CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identif
  2 KB (278 words) - 13:58, 18 October 2022
• GROCSVs
  ...Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequence assemb
  2 KB (274 words) - 21:21, 6 December 2019
• Dragonflye
  Dragonflye is a pipeline that aims to make assembling Oxford Nanopore reads quick and easy. Still wo
  2 KB (283 words) - 20:18, 12 April 2022
• Blast2GO CLI
  ...igh-performance and automatic functional annotation tasks. This Annotation Pipeline allows your to integrate and automate your functional annotation task in a
  2 KB (282 words) - 20:19, 24 August 2022
• PhyloFlash
  phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition o
  2 KB (279 words) - 00:09, 29 October 2020
• Seekdeep
  The SeekDeep pipeline is intended for use on targeted amplicon sequencing data for haplotype freq
  2 KB (281 words) - 17:03, 24 July 2023
• FMRIPrep
  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses
  2 KB (288 words) - 16:47, 17 October 2023
• Shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identify
  2 KB (287 words) - 16:12, 24 November 2020
• C-wap
  C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumin
  2 KB (281 words) - 13:16, 15 August 2022
• Fanc
  FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.
  2 KB (281 words) - 15:56, 22 March 2024
• CRISPResso2
  CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing exp
  2 KB (282 words) - 13:25, 11 October 2022
• Pggb
  This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation
  2 KB (287 words) - 19:56, 6 November 2020
• COLMAP
  ...a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of feat
  2 KB (290 words) - 16:53, 6 June 2022
• SibeliaZ
  construction pipeline. The blocks coordinates are output in GFF format and
  2 KB (284 words) - 20:40, 12 August 2022
• IRAP
  iRAP is a flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of exi
  2 KB (296 words) - 20:10, 24 August 2022
• Ciriquant
  CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
  2 KB (275 words) - 15:00, 30 March 2022
• FastPlast
  Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and
  2 KB (288 words) - 20:23, 23 May 2022
• Circompara2
  CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs f
  2 KB (283 words) - 21:36, 1 April 2022
• RiboTaper
  RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet p
  3 KB (293 words) - 13:48, 20 May 2020
• Autometa
  An automated binning pipeline for single metagenomes, in particular host-associated and highly complex on
  3 KB (300 words) - 21:19, 6 December 2019
• Galaxyml
  Galaxy-ML is a web machine learning end-to-end pipeline building framework, with special support to biomedical data.
  2 KB (284 words) - 14:51, 27 January 2023
• SeqyClean
  ...genome assembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that alleviates these issues.
  3 KB (312 words) - 22:41, 21 August 2022
• IAssembler
  ...sing Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers b
  3 KB (301 words) - 18:39, 15 August 2022
• MetaLAFFA
  MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances of functional ortho
  3 KB (305 words) - 13:52, 23 September 2021
• V-pipe
  ...onski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data.
  3 KB (296 words) - 17:20, 22 August 2022
• Bamtofastq
  ...l should contain the same set of sequences that were input to the original pipeline run, although the order will not be preserved. The FASTQs will be emitted i
  3 KB (318 words) - 13:56, 8 March 2021
• Popoolation
  PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation
  3 KB (321 words) - 21:23, 6 December 2019
• Tbprofiler
  The tbprofiler pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then
  3 KB (312 words) - 21:31, 10 February 2023
• SQANTI
  SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length trans
  3 KB (321 words) - 21:24, 6 December 2019
• ProtHint
  ProtHint is a pipeline for predicting and scoring hints (in the form of
  3 KB (329 words) - 20:27, 12 August 2022
• Roary
  Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seema
  3 KB (308 words) - 17:13, 10 June 2022
• REPdenovo
  ...ies, and can generate much longer repeats than existing tools. The overall pipeline is shown in the mannual file. REPdenovo supports the following main functio
  3 KB (327 words) - 21:43, 21 August 2022
• LongStitch
  A genome assembly correction and scaffolding pipeline using long reads, consisting of up to three steps:
  3 KB (314 words) - 19:00, 10 October 2022
• ContaVect
  ...s from gene therapy vector production after NGS sequencing. This automated pipeline can however be used for wider purpose requiring to identify map NGS dataset
  3 KB (309 words) - 20:40, 10 June 2022
• PBJelly
  PBJelly is a highly automated pipeline that aligns long sequencing reads
  3 KB (309 words) - 17:07, 21 August 2022
• REAPR
  ...eference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an asse
  3 KB (320 words) - 21:35, 21 August 2022
• Ampligraph
  An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
  3 KB (315 words) - 14:44, 10 July 2023
• Necklace
  ...bly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resulting transcr
  3 KB (312 words) - 21:22, 6 December 2019
• Pyrpipe
  ...pyrpipe_engine module to integrate any other third-party program in their pipeline.
  3 KB (311 words) - 15:22, 16 March 2020
• FEELnc
  This document is intended to give a technical description of the FEELnc pipeline in order to annotate long non-coding RNAs (lncRNAs) based on reconstructed
  3 KB (322 words) - 18:53, 10 July 2020
• Model Card Toolkit
  ...to a model's development and performance. Integrating the MCT into your ML pipeline enables the sharing model metadata and metrics with researchers, developers
  3 KB (333 words) - 15:31, 10 July 2023
• MarginPolish
  ...h serves as a standalone assembly polisher, it is also part of an assembly pipeline which includes an ultrafast nanopore assembler Shasta and a multi-task RNN
  3 KB (320 words) - 21:22, 6 December 2019
• FGMP
  FGMP (Fungal Genome Mapping Project) is a bioinformatic pipeline designed to provide in an unbiased manner an estimation of genome completen
  3 KB (326 words) - 21:20, 6 December 2019
• Methylpy
  Methylpy, a pyhton-based analysis pipeline for
  3 KB (309 words) - 21:21, 6 December 2019
• NpScarf
  ...draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbia
  3 KB (326 words) - 14:29, 4 September 2020
• CCMetagen
  CCMetagen is a pipeline to classify organisms in metagenomes or metatranscriptomes accurately.
  3 KB (327 words) - 22:45, 3 January 2022
• Crossmapper
  Crossmapper is an automated bioinformatics pipeline for asessing the rate of read crossmapping when two or more organisms are s
  3 KB (326 words) - 17:40, 31 January 2022
• Amphora2
  An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
  3 KB (333 words) - 17:35, 10 June 2022
• AMOS
  ...so that new contributions can be easily inserted into an existing assembly pipeline. This modular design will foster the development of new assembly algorithms
  3 KB (344 words) - 12:41, 12 August 2022
• Talon
  A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. Dana Wyman, Gabriela Balder
  3 KB (321 words) - 15:13, 23 September 2022
• ElPrep
  ...of the number of processing steps that need to be applied in a particular pipeline, greatly improving runtime performance.
  3 KB (345 words) - 21:20, 6 December 2019
• Pdb2pqr
  *PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Dolinsky TJ
  3 KB (336 words) - 17:51, 15 August 2022
• AutoDock-GPU
  included a batched ligand pipeline developed by Aaron Scheinberg from
  3 KB (332 words) - 15:25, 12 August 2022
• Seqmule
  ...ent, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule al
  3 KB (342 words) - 19:06, 15 September 2022
• Finder
  finder is a gene annotator pipeline which automates the process of
  3 KB (345 words) - 16:42, 15 August 2022
• WU BLAST
  ...st error checking identifies problems sooner; flexible identifiers improve pipeline design and management
  3 KB (356 words) - 17:44, 22 August 2022
• Hapdup
  HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a dual diploid assembly. The r
  3 KB (324 words) - 21:07, 7 April 2022
• Haplomerger2
  HM2 is an easy-to-use automated pipeline for improving geneome assembly in the post-assembly stage. It consists of a
  3 KB (339 words) - 19:05, 12 August 2022
• Hapsembler
  The Hapsembler pipeline is described in contain three main stages:
  3 KB (332 words) - 18:15, 15 August 2022
• Meraculous
  ...mble human-sized genomes on commodity clusters in under a day. The process pipeline implements a highly transparent and portable model of job control and monit
  3 KB (354 words) - 18:36, 10 June 2022
• Rapidsai
  ...at integrates with a variety of machine learning algorithms for end-to-end pipeline accelerations without paying typical serialization costs. RAPIDS also inclu
  3 KB (348 words) - 21:29, 21 August 2022
• READemption
  READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally develop
  3 KB (352 words) - 17:58, 1 June 2022
• Nipype
  existing pipeline systems.
  3 KB (348 words) - 20:07, 12 August 2022
• Humann2
  HUMAnN 2.0 is a pipeline for efficiently and accurately profiling the presence/absence and abundance
  3 KB (348 words) - 22:26, 27 August 2020
• Aquamis
  AQUAMIS is a pipeline for routine assembly and quality assessment of microbial isolate sequencing
  3 KB (348 words) - 22:07, 20 October 2023
• PanX
  ...n-genome analysis, interactive visualization and exploration. The analysis pipeline is based on DIAMOND (Buchfink et al. 2015 Nature Methods), MCL and phylogen
  3 KB (346 words) - 21:22, 6 December 2019
• Biolite
  * A modular 'pipeline' framework with Python wrappers and workflows for commonly used NGS tools,
  3 KB (362 words) - 12:54, 15 August 2022
• RDnaTools
  ...ily the Mothur suite of utilities. Currently rDnaTools implements a single pipeline for the export, filtering, and cluster of 16S sequences.
  3 KB (361 words) - 21:24, 6 December 2019
• Mantis
  ...m needs a tumor BAM and a matched normal BAM file (produced using the same pipeline) to determine the instability score between the two samples within the pair
  3 KB (368 words) - 17:20, 27 May 2022
• Chewbbaca
  chewBBACA “BSR-Based Allele Calling Algorithm” is a comprehensive pipeline including a set of functions for the creation and validation of whole genom
  3 KB (346 words) - 15:58, 20 October 2023
• VirusDetect
  ...z D, Fuentes S, Ling K-S, Kreuze J, Fei Z (2017) VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs.]
  3 KB (377 words) - 23:22, 30 July 2020
• BiG-SCAPE
  ...ategory:Phylogenetics]][[Category:Biology]][[Category:Genomics]][[Category:Pipeline]]
  3 KB (377 words) - 12:53, 15 August 2022
• Blast2GO
  The Blast2GO Pipeline Version (B2G4Pipe) runs Blast2GO without graphical interface. The pipeline accepts BLAST and InterProScan results and parses
  6 KB (920 words) - 14:08, 16 March 2023
• Haphpipe
  HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
  3 KB (405 words) - 16:40, 14 March 2023
• SNAP
  SNAP is a program that is part of a gene sequencing pipeline. It takes data from gene sequencing hardware that consists of short chunks
  3 KB (372 words) - 20:42, 12 August 2022
• SRAssembler
  SRAssembler (Selective Recursive local Assembler) is a modular pipeline program that can assemble genomic DNA reads into contigs that are homologou
  3 KB (381 words) - 15:33, 27 May 2022
• Deepvariant
  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generati
  3 KB (356 words) - 13:17, 16 April 2024
• Wgs
  ...rge in 2004 as the wgs-assembler under the GNU General Public License. The pipeline revised for 454 data was named CABOG (Miller 2008).
  3 KB (375 words) - 20:55, 12 August 2022
• PerM
  ...ormat and that output can be further processed by ComB, SAMtools, RseqFlow pipeline and the [[Galaxy]]. Check the [http://code.google.com/p/perm/wiki/Manual ma
  3 KB (396 words) - 17:40, 21 August 2022
• Themisto
  ...Epidemiology with Mixed Samples. Supplement: Pseudoalignment in the mGEMS pipeline.
  3 KB (401 words) - 20:57, 3 June 2022
• MetaWRAP
  ...efull in your research, please cite the publication: MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis. If certain software wrapped
  3 KB (412 words) - 22:31, 8 September 2020
• Circos
  ...corporated into data acquisition, analysis and reporting pipelines (a data pipeline is a multi-step process in which data is analyzed by multiple and typically
  3 KB (409 words) - 13:35, 15 August 2022
• Maker
  MAKER is a portable and easily configurable genome annotation pipeline. It's purpose is to allow smaller eukaryotic and prokaryotic genome project
  3 KB (387 words) - 18:20, 18 August 2022
• GRIDSS
  ...t is hoped that GRIDSS can serve as an exemplar modular structural variant pipeline designed for interoperability with other tools.
  3 KB (388 words) - 21:20, 6 December 2019
• ARC
  ARC is a pipeline which facilitates iterative, reference guided ''de novo'' assemblies with t
  3 KB (430 words) - 14:32, 12 August 2022
• YAGO
  This is the pipeline to run YAGO 4. It allows to build YAGO 4 from a Wikidata dump.
  4 KB (480 words) - 17:13, 15 December 2022
• Amrfinderplus
  ...mbled nucleotide sequence. AMRFinderPlus is used in the Pathogen Detection pipeline, and these data are displayed in NCBI’s Isolate Browser. AMRFinderPlus re
  4 KB (447 words) - 15:59, 27 May 2022
• EDTA
  ...le Element Annotation Methods for Creation of a Streamlined, Comprehensive Pipeline. Genome Biol. 20(1): 275.]
  4 KB (474 words) - 21:27, 14 September 2023
• Sickle
  ...ion is close. Illumina quality refers to qualities encoded with the CASAVA pipeline between versions 1.3 and 1.7. Illumina quality using CASAVA >= 1.8 is Sange
  4 KB (551 words) - 22:56, 21 August 2022
• Trimmomatic
  ...(using phred + 33 or phred + 64 quality scores, depending on the Illumina pipeline used), either uncompressed or gzipp'ed FASTQ. Use of gzip format is determi
  4 KB (522 words) - 20:52, 12 August 2022
• Galaxy
  ...ed collaborative environment, Galaxy's work history sharing and analytical pipeline building, as well as publishing and sharing the results in a convenient and
  4 KB (562 words) - 18:05, 9 November 2022
• Appreci8
  Appreci8 is a variant calling pipeline for detecting single nucleotide variants (SNVs) and short indels (up to 30
  4 KB (561 words) - 14:25, 12 August 2022
• GATK
  ...plementary tools to those available in those two packages. Our SNP calling pipeline (Q score recalibration -> multiple sequence realignment -> snp/index callin
  4 KB (540 words) - 16:53, 15 August 2022
• Biology
  ...turn, will provide the hardware and software support for the data analysis pipeline they create for you.
  4 KB (665 words) - 21:23, 14 December 2022
• Parabricks
  ...line and somatic analysis. The core of the Parabricks software is its data pipeline which takes raw data and transforms it according to the user's requirements
  4 KB (574 words) - 21:25, 14 December 2022
• Rnalysis
  If you use the Limma-Voom differential expression pipeline in your research, please cite:
  5 KB (648 words) - 16:12, 25 April 2023
• AlphaFold
  This package provides an implementation of the inference pipeline of AlphaFold v2.3. This is a completely new model that was entered in CASP1
  6 KB (832 words) - 15:38, 2 February 2024
• OrthoMCL
  ...-- that creates a suitable orthomcl.config file and automates much of the pipeline is provided:
  5 KB (748 words) - 22:40, 28 January 2024

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