Search results

LAMP
[[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po

2 KB (245 words) - 19:29, 12 August 2022
DeepARG
[[Category:Software]][[Category:Phylogenetics]] ...software requires external data that has been removed from the web and the software has been abandoned by its author. It is not functional.

3 KB (320 words) - 21:58, 13 February 2023
Pycoqc
[[Category:Software]] ...ive quality control for Oxford Nanopore Sequencing. Journal of Open Source Software, 4(34), 1236, https://doi.org/10.21105/joss.01236

3 KB (309 words) - 13:55, 21 October 2022
Quarto
[[Category:Software]]

3 KB (327 words) - 14:09, 27 February 2024
AtomEye
[[Category:Software]][[Category:Material Science]] AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics cor

3 KB (351 words) - 15:21, 12 August 2022
Seqscreen
[[Category:Software]]

2 KB (245 words) - 14:54, 15 August 2022
MAJIQ
[[Category:Software]][[Category:Phylogenetics]] MAJIQ and Voila are two software packages that together detect, quantify, and visualize local splicing varia

2 KB (247 words) - 14:59, 10 June 2022
MAGeCK-VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 20:21, 26 May 2022
Velvet
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (523 words) - 17:06, 14 December 2022
Ufraw
[[Category:Software]][[Category:Data Mining]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (316 words) - 14:45, 6 June 2022
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
Software Development Policies
==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r

533 bytes (84 words) - 15:43, 19 August 2022
Hyb
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (247 words) - 15:07, 10 June 2022
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
EnTAP
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (236 words) - 21:20, 6 December 2019
RNAhybrid
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (285 words) - 20:56, 12 August 2022
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
FIGARO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 16:27, 15 December 2021
RiboPicker
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (377 words) - 21:50, 21 August 2022
PICRUSt
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 18:28, 10 June 2022
AutoDock
[[Category:Software]][[Category:Biology]]

2 KB (268 words) - 15:47, 10 June 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
NucleoATAC
[[Category:Software]][[Category:biology]]

2 KB (276 words) - 20:08, 12 August 2022
MiRDP2
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (328 words) - 18:09, 31 May 2022
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
PLEK
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:57, 10 June 2022
SNPsplit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (282 words) - 20:38, 27 May 2022
FreeBayes
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (302 words) - 18:55, 12 August 2022
RStudio
[[Category:Software]][[Category:Statistics]]

3 KB (461 words) - 19:51, 18 July 2023
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
NANO
[[Category:Software]][[Category:Programming]]

3 KB (360 words) - 19:24, 29 November 2022
AMPtk
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (289 words) - 12:41, 12 August 2022
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
XZ
[[Category:Software]][[Category:compression]][[Category:library]] XZ Utils is free general-purpose data compression software with a high compression ratio. XZ Utils were written for POSIX-like systems

2 KB (287 words) - 14:19, 27 May 2022
DeepMReye
[[Category:Software]][[Category:biology]][[Category:Library]]

3 KB (316 words) - 18:49, 12 August 2022
Pybedtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 13:31, 6 October 2021
NextPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:55, 30 November 2020
SCRIPTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://software.broadinstitute.org/software/scripture/}}

3 KB (302 words) - 20:36, 12 August 2022
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
MountainSort
[[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent

3 KB (309 words) - 21:22, 6 December 2019
Ansible
[[Category:Software]][[Category:Workflow Automation]]

3 KB (348 words) - 14:17, 12 August 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
VDJtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:29, 6 December 2019
Pod5
[[Category:Software]]

2 KB (292 words) - 17:31, 1 July 2022
ASE-ANI
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (303 words) - 14:55, 12 August 2022
MISO
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (390 words) - 20:44, 18 August 2022
MAGMA-GWAS
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ctg.cncr.nl/software/magma}}

2 KB (273 words) - 19:35, 23 February 2021
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
HALC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:20, 6 December 2019
Guideseq
[[Category:Software]]

2 KB (259 words) - 18:08, 15 August 2022
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
USEARCH
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

4 KB (559 words) - 17:19, 22 August 2022
BoxCLI
[[Category:Software]][[Category:File Management]][[Category:Web]][[Category:Programming]]

2 KB (253 words) - 13:52, 21 October 2022
PETSc
[[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.

3 KB (337 words) - 15:25, 19 August 2022
DynamicDBG
[[Category:Software]][[Category:Phylogenetics]] ...membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and n

3 KB (312 words) - 21:20, 6 December 2019
MCNP
[[Category:Software]][[Category:Physics]] ...message from RSICC’s Request History tool that contains a list all of the software for which you have been licensed to the [[Remote_Support#Email|User Support

3 KB (422 words) - 21:39, 4 April 2024
Roguenarok
[[Category:Software]]

2 KB (226 words) - 16:07, 18 April 2023
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
Dammit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ..., the existing solutions are overly complicated or rely on crappy non-free software.

2 KB (279 words) - 21:20, 6 December 2019
GFOLD
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (388 words) - 18:54, 10 June 2022
Chipyard
[[Category:Software]][[Category:Simulation]] ...FPGA-accelerated simulation (FireSim), automated VLSI flows (Hammer), and software workload generation for bare-metal and Linux-based systems (FireMarshal). C

3 KB (360 words) - 14:30, 11 October 2022
SHARCGS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:De Novo]]

3 KB (313 words) - 22:42, 21 August 2022
Meson
[[Category:Software]][[Category:Programming]]

2 KB (237 words) - 15:56, 24 October 2023
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
Fastp
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (256 words) - 15:23, 15 August 2022
Oases
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (293 words) - 17:25, 19 August 2022
AAFTF
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]

2 KB (245 words) - 20:45, 11 August 2022
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
MiRanda
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 21:21, 6 December 2019
ClustalO
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (292 words) - 18:36, 12 August 2022
FLEA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 22:01, 27 August 2020
CAVIAR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 21:17, 6 December 2019
Plasme
[[Category:Software]]

3 KB (375 words) - 18:08, 3 April 2024
VS Code Remote Development
* By using the software, you agree to

7 KB (1,100 words) - 17:42, 5 March 2024
Recycler
[[Category:Software]]

3 KB (297 words) - 14:21, 11 October 2022
GenomicTools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:ChIP-Seq]][[Category:RNA-Se

3 KB (385 words) - 18:58, 12 August 2022
PICSL
[[Category:Software]] This package contains a software implementation for joint label fusion and

3 KB (390 words) - 20:31, 24 August 2022
Hacdivsel
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (280 words) - 22:20, 10 October 2022
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
Panseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:12, 17 November 2021
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
Distruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:20, 6 December 2019
TrimAl
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Alignment‏]]

2 KB (264 words) - 19:32, 24 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
Gawk
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/gawk/}}

3 KB (356 words) - 16:55, 15 August 2022
DSSP
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (297 words) - 19:51, 13 June 2022
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
Inspector
[[Category:Software]][[Category:biology]][[Category:Genomics]]

3 KB (319 words) - 18:50, 15 August 2022
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
PASTA
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (381 words) - 19:31, 24 August 2022
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Glog
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (269 words) - 17:10, 15 August 2022
ImageJ
[[Category:Software]][[Category:Imaging]]

2 KB (268 words) - 20:03, 10 June 2022
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
PRANK
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (271 words) - 20:25, 12 August 2022
Pytorch
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (257 words) - 15:56, 6 June 2022
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022

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