Search results

• Artemis
  Bioinformatics (Oxford, England) 2012;28;4;464-9 PUBMED: 22199388; PMC: 3278759; DOI: 10.1093/bioinformatics/btr703
  3 KB (378 words) - 14:53, 12 August 2022
• BESST
  ...vestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222] ...(2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281]
  3 KB (332 words) - 12:51, 15 August 2022
• Csvtk
  ...informatics, CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics and data science.
  2 KB (260 words) - 18:44, 12 August 2022
• Pyfastx
  ...dom access to sequences from plain and gzipped FASTA/Q files. Briefings in Bioinformatics, 2021, 22(4):bbaa368.}} <!--CITATION--> |{{#vardefine:keywords|genomics, bioinformatics, python}} <!--ADDITIONAL VARIABLE-->
  2 KB (261 words) - 20:25, 2 October 2024
• Minimap2
  ...gnment for nucleotide sequences. Bioinformatics, 34:3094-3100. doi:10.1093/bioinformatics/bty191
  2 KB (260 words) - 13:31, 15 August 2022
• MultiQC
  ...QC is a tool to create a single report with interactive plots for multiple bioinformatics analyses across many samples. ...single report Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller Bioinformatics (2016)]
  2 KB (285 words) - 19:54, 12 August 2022
• Chopper
  Chopper is a bioinformatics tool designed for efficient and effective processing of biological data. It .... [https://doi.org/10.1093/bioinformatics/btad311](https://doi.org/10.1093/bioinformatics/btad311)"
  3 KB (286 words) - 21:13, 23 July 2024
• Lambda
  ...Singer, Knut Reinert; Bioinformatics 2014 30 (17): i349-i355; doi: 10.1093/bioinformatics/btu439
  2 KB (279 words) - 21:21, 6 December 2019
• Newick utils
  ...ree Processing in the UNIX Shell. ''Thomas Junier and Evgeny M. Zdobnov''. Bioinformatics 2010 26:1669-1670 [http://bioinformatics.oxfordjournals.org/content/26/13/1669.full http://bioinformatics.oxfordjournals.org/content/26/13/1669.full]
  3 KB (305 words) - 14:10, 1 September 2021
• Bismark
  |{{#vardefine:url|http://www.bioinformatics.babraham.ac.uk/projects/download.html#bismark}} Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi:
  2 KB (293 words) - 18:17, 12 August 2022
• STAR
  A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner"
  2 KB (291 words) - 16:01, 22 August 2022
• Mapdamage
  ...ncient DNA damage parameters. Bioinformatics 23rd April 2013. doi: 10.1093/bioinformatics/btt193]
  3 KB (299 words) - 21:28, 16 September 2022
• SortMeRNA
  ...omal RNAs in metatranscriptomic data", Bioinformatics (2012), doi: 10.1093/bioinformatics/bts611.]
  3 KB (299 words) - 17:00, 10 June 2022
• Tax4Fun
  ...enomic 16S rRNA data Bioinformatics (2015) 31 (17): 2882-2884. doi:10.1093/bioinformatics/btv287.]
  3 KB (303 words) - 18:29, 4 February 2020
• V-pipe
  ...rom high-throughput sequencing data." Bioinformatics, January. doi:10.1093/bioinformatics/btab015.
  3 KB (296 words) - 17:20, 22 August 2022
• NextGenMap
  ...013) 29 (21): 2790-2791 first published online August 23, 2013 doi:10.1093/bioinformatics/btt468]
  3 KB (309 words) - 16:24, 19 August 2022
• SeSiMCMC
  Bioinformatics. 2005 May 15;21(10):2240-5. doi: 10.1093/bioinformatics/bti336. Epub 2005 Feb 22.
  3 KB (299 words) - 22:41, 21 August 2022
• MELTING
  ...(2001). MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17: 1226-1227. ...lexible platform to predict the melting temperatures of nucleic acids. BMC Bioinformatics, 13: 101.
  3 KB (306 words) - 19:50, 12 August 2022
• NtEdit
  ...n Bousquet, Joerg Bohlmann, Inanc Birol. 2019. Bioinformatics. doi:10.1093/bioinformatics/btz400]
  3 KB (316 words) - 21:23, 6 December 2019
• Circleator
  ...on of genome-associated data with BioPerl and SVG. Bioinformatics, 10.1093/bioinformatics/btu505.]
  3 KB (319 words) - 21:18, 6 December 2019

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