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- Bioinformatics (Oxford, England) 2012;28;4;464-9 PUBMED: 22199388; PMC: 3278759; DOI: 10.1093/bioinformatics/btr703 ...3 KB (378 words) - 14:53, 12 August 2022
- ...vestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222] ...(2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281] ...3 KB (332 words) - 12:51, 15 August 2022
- ...informatics, CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics and data science. ...2 KB (260 words) - 18:44, 12 August 2022
- ...dom access to sequences from plain and gzipped FASTA/Q files. Briefings in Bioinformatics, 2021, 22(4):bbaa368.}} <!--CITATION--> |{{#vardefine:keywords|genomics, bioinformatics, python}} <!--ADDITIONAL VARIABLE--> ...2 KB (261 words) - 20:25, 2 October 2024
- ...gnment for nucleotide sequences. Bioinformatics, 34:3094-3100. doi:10.1093/bioinformatics/bty191 ...2 KB (260 words) - 13:31, 15 August 2022
- ...QC is a tool to create a single report with interactive plots for multiple bioinformatics analyses across many samples. ...single report Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller Bioinformatics (2016)] ...2 KB (285 words) - 19:54, 12 August 2022
- Chopper is a bioinformatics tool designed for efficient and effective processing of biological data. It .... [https://doi.org/10.1093/bioinformatics/btad311](https://doi.org/10.1093/bioinformatics/btad311)" ...3 KB (286 words) - 21:13, 23 July 2024
- ...Singer, Knut Reinert; Bioinformatics 2014 30 (17): i349-i355; doi: 10.1093/bioinformatics/btu439 ...2 KB (279 words) - 21:21, 6 December 2019
- ...ree Processing in the UNIX Shell. ''Thomas Junier and Evgeny M. Zdobnov''. Bioinformatics 2010 26:1669-1670 [http://bioinformatics.oxfordjournals.org/content/26/13/1669.full http://bioinformatics.oxfordjournals.org/content/26/13/1669.full] ...3 KB (305 words) - 14:10, 1 September 2021
- |{{#vardefine:url|http://www.bioinformatics.babraham.ac.uk/projects/download.html#bismark}} Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: ...2 KB (293 words) - 18:17, 12 August 2022
- A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner" ...2 KB (291 words) - 16:01, 22 August 2022
- ...ncient DNA damage parameters. Bioinformatics 23rd April 2013. doi: 10.1093/bioinformatics/btt193] ...3 KB (299 words) - 21:28, 16 September 2022
- ...omal RNAs in metatranscriptomic data", Bioinformatics (2012), doi: 10.1093/bioinformatics/bts611.] ...3 KB (299 words) - 17:00, 10 June 2022
- ...enomic 16S rRNA data Bioinformatics (2015) 31 (17): 2882-2884. doi:10.1093/bioinformatics/btv287.] ...3 KB (303 words) - 18:29, 4 February 2020
- ...rom high-throughput sequencing data." Bioinformatics, January. doi:10.1093/bioinformatics/btab015. ...3 KB (296 words) - 17:20, 22 August 2022
- ...013) 29 (21): 2790-2791 first published online August 23, 2013 doi:10.1093/bioinformatics/btt468] ...3 KB (309 words) - 16:24, 19 August 2022
- Bioinformatics. 2005 May 15;21(10):2240-5. doi: 10.1093/bioinformatics/bti336. Epub 2005 Feb 22. ...3 KB (299 words) - 22:41, 21 August 2022
- ...(2001). MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17: 1226-1227. ...lexible platform to predict the melting temperatures of nucleic acids. BMC Bioinformatics, 13: 101. ...3 KB (306 words) - 19:50, 12 August 2022
- ...n Bousquet, Joerg Bohlmann, Inanc Birol. 2019. Bioinformatics. doi:10.1093/bioinformatics/btz400] ...3 KB (316 words) - 21:23, 6 December 2019
- ...on of genome-associated data with BioPerl and SVG. Bioinformatics, 10.1093/bioinformatics/btu505.] ...3 KB (319 words) - 21:18, 6 December 2019
- Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. ...2 KB (300 words) - 16:06, 7 December 2021
- ...ker; Susan Branford; Andreas W. Schreiber Bioinformatics 2016 doi: 10.1093/bioinformatics/btw239] ...3 KB (324 words) - 21:07, 6 December 2019
- ...apping based on bulked segregant analysis by deep sequencing" published in Bioinformatics. ...hod for QTL mapping based on bulked segregant analysis by deep sequencing. Bioinformatics, 2019.] ...3 KB (320 words) - 21:54, 26 August 2020
- ...on. Bioinformatics (2012) 28(19): 2417-2424. Epub 2012 Jul 24. doi:10.1093/bioinformatics. ...3 KB (320 words) - 20:56, 12 August 2022
- ...RNA-seq experiments Bioinformatics (2012) 28 (16): 2184-2185. doi: 10.1093/bioinformatics/bts356 pubmed] ...3 KB (328 words) - 17:48, 10 June 2022
- ...A. et al. The MaSuRCA genome Assembler. Bioinformatics (2013). doi:10.1093/bioinformatics/btt476 ...3 KB (340 words) - 18:24, 18 August 2022
- ...ersatile and scalable detection of copy number variants in the journal OUP Bioinformatics] ...btx618 The Canvas Small Pedigree Workflow was published in the journal OUP Bioinformatics: Canvas SPW: calling de novo copy number variants in pedigrees] ...3 KB (342 words) - 22:23, 26 August 2020
- * Composition-based score adjustments as in Bioinformatics 21:902-911 ...) PLAST: parallel local alignment search tool for database comparison. BMC Bioinformatics, vol 10, no 329. ...3 KB (320 words) - 20:23, 12 August 2022
- Bioinformatics 31: 2877-2878 doi: 10.1093/bioinformatics/btv271. ...3 KB (327 words) - 12:56, 15 August 2022
- Bioinformatics, 2010 Publication : Bioinformatics ...4 KB (559 words) - 17:19, 22 August 2022
- ...ume 38, Issue 18, September 2022, Pages 4403–4405, https://doi.org/10.1093/bioinformatics/btac506 ...al. Efficient inference of homologs in large eukaryotic pan-proteomes. BMC Bioinformatics 19, 340 (2018). https://doi.org/10.1186/s12859-018-2362-4 ...4 KB (455 words) - 20:01, 21 October 2024
- ...lizing Distances in Cross-linking Experiments. Bioinformatics, doi:10.1093/bioinformatics/btr348. ...3 KB (345 words) - 16:47, 28 February 2023
- ...sequence alignment of viral genomes." Bioinformatics. btaa743. doi:10.1093/bioinformatics/btaa743] ...3 KB (357 words) - 19:56, 27 May 2022
- Bioinformatics Toolbox Version 4.3 (R2013a) ...2 KB (206 words) - 14:11, 30 June 2017
- ...bling loci across divergent taxa from next-generation sequencing data. BMC Bioinformatics 16:98 DOI 10.1186/s12859-015-0515-2}} <!--CITATION--> ...bling loci across divergent taxa from next-generation sequencing data. BMC Bioinformatics 16:98 DOI 10.1186/s12859-015-0515-2] ...3 KB (350 words) - 15:23, 12 August 2022
- ...nomics assembly via succinct de Bruijn graph. Bioinformatics, doi: 10.1093/bioinformatics/btv033] ...3 KB (367 words) - 18:31, 18 August 2022
- ...in print, online at [http://doi:10.1093/bioinformatics/btu638 doi:10.1093/bioinformatics/btu638]. ...3 KB (411 words) - 19:05, 12 August 2022
- ...ariate genomic data sets. Bioinformatics. 2020 Aug 3:btaa692. doi: 10.1093/bioinformatics/btaa692. Epub ahead of print. PMID: 32745185. ...3 KB (375 words) - 20:54, 18 May 2023
- ...tp://bioinformatics.oxfordjournals.org/cgi/content/full/btu462 doi:10.1093/bioinformatics/btu462]. ...3 KB (415 words) - 15:08, 12 August 2022
- Clann has been published in Bioinformatics in 2005 under the following title: ...Clann: investigating phylogenetic information through supertree analyses. Bioinformatics 21(3): 390-2. ...3 KB (438 words) - 18:30, 12 August 2022
- ...app for fast, interactive sequence searches. Bioinformatics, doi: 10.1093/bioinformatics/bty1057 (2019).] ...3 KB (413 words) - 20:22, 2 October 2023
- ...ed SCRATCH suite of predictors developed by the Institute for Genomics and Bioinformatics (IGB) of the University of California, Irvine (UCI). Bioinformatics, vol 30 (18), 2592-2597 ...3 KB (381 words) - 20:35, 12 August 2022
- ...es in terms of similarities to known protein families challenges classical bioinformatics. The ultrafast protein classification (UProC) toolbox implements a novel al ...Peter. '''UProC: tools for ultra-fast protein domain classification'''. ''Bioinformatics'', 2014 ...3 KB (418 words) - 20:53, 12 August 2022
- ...ing biases in next generation sequencing data." Bioinformatics doi:10.1093/bioinformatics/btq614 [PMID: 21088025] ...3 KB (429 words) - 20:34, 12 August 2022
- Bioinformatics 2005 21:1859-1875 Bioinformatics 2010 26:873-881 ...3 KB (450 words) - 17:11, 15 August 2022
- @article{10.1093/bioinformatics/btaa441, journal = {Bioinformatics}, ...6 KB (774 words) - 14:28, 15 December 2022
- ...generation sequencing data.Fumagalli M, Vieira FG, Linderoth T, Nielsen R. Bioinformatics. 2014 May 15;30(10):1486-7 ...t Generation Sequencing Data. Korneliussen T, Albrechtsen A, Nielsen R BMC Bioinformatics. 2014 Nov 25;15(1):356 ...5 KB (708 words) - 15:31, 14 December 2022
- ...Usadel. 2014. Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bioinformatics, btu170. ...ck-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics, 27:764-770. ...4 KB (487 words) - 21:20, 6 December 2019
- Bioinformatics pipeline for discovery of genetic variants from NGS reads. ...2 KB (239 words) - 22:07, 21 August 2022
- The StaPH-B ToolKit is a Python library of commonly used bioinformatics tools that help to inform public health action. ...2 KB (248 words) - 19:54, 2 June 2022
- Hyb is a bioinformatics pipeline for analysis of CLASH (crosslinking, ligation and sequencing of hy ...2 KB (247 words) - 15:07, 10 June 2022
- SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DNA sequencing data ...2 KB (250 words) - 20:10, 24 August 2022
- Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. ...2 KB (254 words) - 19:29, 12 August 2022
- ...ral.com/articles/10.1186/s12859-017-1529-8 Orthograph was published in BMC Bioinformatics (2017).] ...2 KB (261 words) - 18:00, 19 August 2022
- The HALC paper is accepted for publication in BMC Bioinformatics! ...2 KB (265 words) - 21:20, 6 December 2019
- FLEA is a bioinformatics pipeline for analyzing longitudinal sequencing data from the Pacific Biosci ...2 KB (260 words) - 22:01, 27 August 2020
- [[Category:Software]][[Category:Bioinformatics]] ...2 KB (259 words) - 14:43, 6 August 2024
- [[Category:Software]][[Category:Bioinformatics]] ...2 KB (259 words) - 14:41, 6 August 2024
- Hadfield et al., Nextstrain: real-time tracking of pathogen evolution , Bioinformatics (2018) ...2 KB (260 words) - 19:03, 12 January 2023
- ...sensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics 20, 1157-1169. ...2 KB (257 words) - 18:58, 12 August 2022
- ...ume 34, Issue 15, 01 August 2018, Pages 2666–2669, https://doi.org/10.1093/bioinformatics/bty149 ...2 KB (260 words) - 19:24, 7 September 2022
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparat ...2 KB (265 words) - 14:30, 4 September 2020
- The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary na ...2 KB (266 words) - 18:58, 12 August 2022
- ...local alignment. *Bioinformatics*, 39(5), btad311. https://doi.org/10.1093/bioinformatics/btad311 ...2 KB (265 words) - 21:22, 23 July 2024
- ...009.pdf Salvador Capella-Gutierrez; Jose M. Silla-Martinez; Toni Gabaldon. Bioinformatics 2009 25: 1972-1973.] ...2 KB (264 words) - 19:32, 24 August 2022
- McLaren et. al. (doi:10.1093/bioinformatics/btq330) ...2 KB (270 words) - 17:28, 22 August 2022
- ...command line tools for the analysis of ancient whole genome duplications. Bioinformatics., bty915] ...2 KB (270 words) - 19:52, 27 May 2022
- Bioinformatics (2019) https://doi.org/10.1093/bioinformatics/btz795 ...2 KB (265 words) - 19:28, 12 August 2022
- A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is writ ...2 KB (271 words) - 15:52, 10 June 2022
- ...n multiple genomes, Bioinformatics, 2022; btac196, https://doi.org/10.1093/bioinformatics/btac196 ...2 KB (271 words) - 20:00, 5 August 2022
- ...s/article/35/3/407/5055406 Dynamic compression schemes for graph coloring, Bioinformatics, 2018 by Harun Mustafa, Ingo Schilken, Mikhail Karasikov, Carsten Eickhoff, ...2 KB (276 words) - 21:20, 6 December 2019
- |{{#vardefine:url|https://github.com/LANL-Bioinformatics/FaQCs}} ...Sequencing Data with FaQCs. [https://pubmed.ncbi.nlm.nih.gov/25408143/ BMC Bioinformatics. 2014 Nov 19;15] ...2 KB (268 words) - 17:48, 18 May 2023
- ...R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204] ...2 KB (273 words) - 16:13, 10 June 2022
- ...Volume 38, Issue 11, 1 June 2022, Pages 3109–3112, https://doi.org/10.1093/bioinformatics/btac292 ...2 KB (262 words) - 21:30, 22 July 2024
- ...ge for analyzing and reconstructing reticulate evolutionary histories, BMC Bioinformatics 9:322. ...2 KB (263 words) - 21:23, 6 December 2019
- ...o R. DeepSig: deep learning improves signal peptide detection in proteins, Bioinformatics (2018) 34(10): 1690-1696. ...2 KB (266 words) - 04:24, 6 December 2022
- ...l, Jared, et al. "NxTrim: optimized trimming of Illumina mate pair reads." Bioinformatics 31.12 (2015): 2035-2037.] ...2 KB (273 words) - 20:08, 12 August 2022
- ...ngr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats. ...2 KB (285 words) - 17:38, 13 October 2022
- [[Category:Software]][[Category:Bioinformatics]] ...2 KB (283 words) - 18:55, 1 December 2023
- ...e 35, Issue 22, 15 November 2019, Pages 4537–4542, https://doi.org/10.1093/bioinformatics/btz265 ...2 KB (273 words) - 20:02, 8 November 2022
- ...Tiara: deep learning-based classification system for eukaryotic sequences, Bioinformatics, Volume 38, Issue 2, 15 January 2022, Pages 344–350] ...2 KB (272 words) - 16:36, 22 August 2022
- |{{#vardefine:url|http://www.bioinformatics.org/spower}} ...nalysis and sample size estimation for sequence-based association studies. Bioinformatics. (2014)] ...2 KB (274 words) - 22:38, 21 August 2022
- ...abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in v ...2 KB (276 words) - 19:03, 12 August 2022
- C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read ...2 KB (281 words) - 13:16, 15 August 2022
- ...t, M., Danek, A. (2019) Kmer-db: instant evolutionary distance estimation, Bioinformatics, 35(1): 133–136] ...2 KB (277 words) - 13:30, 15 August 2022
- ...ng, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)] ...2 KB (279 words) - 16:35, 10 June 2022
- ...T. Holder. 2010. "DendroPy: A Python library for phylogenetic computing". Bioinformatics 26: 1569-1571. (for all SATé versions from this website) ...of the 15th ISCB Conference on Intelligent Systems for Molecular Biology, Bioinformatics'' '''23''', i559-i568, 2007. And see http://opal.cs.arizona.edu/ ...7 KB (910 words) - 20:43, 21 December 2022
- Pond SLK, Frost SDW, Muse SV: HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005, 21:676-679. ...2 KB (275 words) - 16:40, 10 June 2022
- nubeam-dedup is a fast and easy-to-use bioinformatics tool removing exact PCR duplicates for sequencing reads, single-end or pair [https://academic.oup.com/bioinformatics/article-abstract/36/10/3254/5753947?redirectedFrom=fulltext Hang Dai and Yo ...2 KB (282 words) - 17:23, 19 August 2022
- ...e and robust circRNA detection from RNA-seq with CirComPara2, Briefings in Bioinformatics, 2021;, bbab418, https://doi.org/10.1093/bib/bbab418 ...2 KB (283 words) - 21:36, 1 April 2022
- ...prehensive Tool for Rare Variant Association Analysis Using Sequence Data. Bioinformatics 2016 32: 1423-1426.] ...3 KB (293 words) - 21:59, 21 August 2022
- ...ntersection and visualization of multiple gene or genomic region sets. BMC Bioinformatics. 2017;18:287. doi: 10.1186/s12859-017-1708-7] ...3 KB (295 words) - 21:21, 6 December 2019
- BMC Bioinformatics 2010, 11:601 ...2 KB (280 words) - 16:57, 10 June 2022
- ...ntral.com/articles/10.1186/1471-2105-12-116 Miele V, Penel S, Duret L. BMC Bioinformatics. 2011 Apr 22;12:116. doi: 10.1186/1471-2105-12-116.] ...3 KB (287 words) - 21:24, 6 December 2019
- ...precise alignment of raw reads against redundant databases with KMA", BMC Bioinformatics, 2018;19:307. ...2 KB (292 words) - 15:51, 30 January 2023
- Pseudofinder is a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bac ...3 KB (304 words) - 13:41, 11 October 2021
- ...nformation into de Bruijn graphs Turner I, Garimella K, Iqbal Z, McVean G (Bioinformatics) (Advanced access 15 March 2018)] ...3 KB (297 words) - 22:22, 8 September 2020
- ...388 Hadfield et al., Nextstrain: real-time tracking of pathogen evolution, Bioinformatics (2018)] ...3 KB (295 words) - 14:56, 2 March 2020
- ...tility: a phyloinformatics tool for trees, alignments, and molecular data. Bioinformatics. 24: 715-716 ...2 KB (296 words) - 20:22, 12 August 2022
- |{{#vardefine:url|http://manuals.bioinformatics.ucr.edu/home/branch}} ...matics: [http://bioinformatics.oxfordjournals.org/content/early/2013/03/14/bioinformatics.btt127.abstract epub]. ...3 KB (309 words) - 13:09, 15 August 2022