Search results

Tiara
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 16:36, 22 August 2022
AdapterRemoval
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 20:47, 11 August 2022
Primus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 21:22, 6 December 2019
BEDTools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (485 words) - 12:48, 15 August 2022
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
ViennaRNA
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (396 words) - 19:08, 10 June 2022
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
NECAT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 13:32, 23 June 2020
Tensorboard
...separate workload within a HiPerGator Desktop session. Many neural network software frameworks are able to stream training data to a TensorBoard log file.

2 KB (231 words) - 21:03, 12 December 2023
Nanodisco
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:37, 27 August 2021
EVidenceModeler
[[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in

3 KB (311 words) - 14:59, 27 July 2020
Popcorn
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (260 words) - 18:49, 21 August 2022
DRep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
PALES
[[Category:Software]][[Category:Physics]] |{{#vardefine:url|http://spin.niddk.nih.gov/bax/software/PALES/index.html}}

3 KB (355 words) - 18:06, 19 August 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
BayeScan
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |{{#vardefine:url|http://cmpg.unibe.ch/software/BayeScan/index.html}}

3 KB (402 words) - 18:10, 12 August 2022
CMWP
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (329 words) - 17:57, 10 June 2022
Applications
[[Category:Software]]

1 KB (138 words) - 13:26, 27 September 2022
ConPADE
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 22:14, 26 August 2020
Pychopper
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]]

2 KB (262 words) - 18:12, 27 July 2022
SequelQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
NAMD
[[Category:Software]][[Category:Molecular Dynamics]]

2 KB (245 words) - 13:45, 19 August 2022
Svim-asm
[[Category:Software]][[Category:Biology]]

3 KB (306 words) - 17:16, 31 May 2022
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
MinkowskiEngine
[[Category:Software]][[Category:Machine Learning]]

2 KB (256 words) - 17:52, 31 May 2022
Nt
[[Category:Software]]

2 KB (262 words) - 14:38, 15 July 2022
Gepard
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 22:10, 27 August 2020
Pharmcat
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (288 words) - 20:19, 12 August 2022
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
EpiNano
[[Category:Software]][[Category:Biology]][[Category: NGS]]

2 KB (241 words) - 18:35, 21 July 2022
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
MetaVelvet
[[Category:Software]][[Category:genomics]][[Category:Biology]]

3 KB (326 words) - 19:28, 18 August 2022
CycleGan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:06, 14 April 2021
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
SNPGenie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (423 words) - 18:41, 1 June 2022
Omniverse
[[Category:Software]][[Category:Library]][[Category:Math]]

7 KB (983 words) - 14:48, 25 July 2023
Vcontact
[[Category:Software]][[Category:Phylogenetics]]

3 KB (358 words) - 20:04, 27 May 2022
MolProbity
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

2 KB (248 words) - 16:44, 30 January 2023
IOAPI
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (341 words) - 19:35, 24 August 2022
Tandem-Genotypes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:01, 1 June 2022
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
RnaQUAST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

2 KB (257 words) - 21:57, 21 August 2022
PhyloAcc
[[Category:Software]][[Category:Phylogenetics]] This is a software to detect the shift pattern of DNA substitution rate of a genomic region an

4 KB (469 words) - 20:53, 18 May 2021
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
Nsight
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

3 KB (316 words) - 20:39, 24 August 2022
RepeatExplorer
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (278 words) - 21:44, 21 August 2022
NanoSV
[[Category:Software]][[Category:Biology]][[Category:Genomics]] NanoSV is a software package that can be used to identify structural genomic variations in long-

2 KB (282 words) - 14:23, 19 August 2022
Eukulele
[[Category:Software]][[Category:Alignment]][[Category:Annotation]][[Category:Biology]][[Categor The software includes four major features:

4 KB (453 words) - 22:12, 8 March 2024
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022
PacMAP
[[Category:Software]][[Category:Genomics]]

3 KB (304 words) - 18:24, 11 February 2023
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
Matt
[[Category:Software]]

2 KB (257 words) - 21:03, 6 April 2023
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
Fastx Toolkit
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (257 words) - 16:37, 15 August 2022
Julia
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Statistics]]

3 KB (412 words) - 20:49, 21 October 2022
PolyGembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:45, 3 November 2020
Illumina-utils
[[Category:Software]][[Category:Phylogenetics]]

2 KB (295 words) - 18:43, 15 August 2022
Shustring
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (237 words) - 14:55, 10 June 2022
Deprecation
[[Category:Software]] ...databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months after being added

9 KB (946 words) - 22:32, 15 December 2022
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
Amrfinderplus
[[Category:Software]][[Category:Phylogenetics]]

4 KB (447 words) - 15:59, 27 May 2022
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
Bamtools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (289 words) - 18:02, 12 August 2022
Package-GFE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This software package is for estimating allele and genotype frequencies from nucleotide r

2 KB (280 words) - 16:45, 10 June 2022
FFTW
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (223 words) - 16:41, 15 August 2022
MKL
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Programming]][[Category:Co |{{#vardefine:url|https://software.intel.com/en-us/mkl}}

3 KB (378 words) - 19:14, 24 August 2022
LSD2
[[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”

2 KB (269 words) - 20:45, 30 April 2020
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
Ezaai
[[Category:Software]][[Category:biology]][[Category:Phylogenetics]]

2 KB (282 words) - 15:13, 15 August 2022
WIsH
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:29, 6 December 2019
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
BamUtil
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (328 words) - 18:02, 12 August 2022
Platypus
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (435 words) - 19:21, 10 June 2022
Bismark
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (293 words) - 18:17, 12 August 2022
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
Pbsmrtpipe
[[Category:Software]][[Category:Biology]][[Category:Programming]]

2 KB (239 words) - 18:05, 15 August 2022
Category:Physics
[[Category:Software]]

21 members (0 subcategories, 0 files) - 15:38, 19 September 2014
RepeatSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 15:29, 27 May 2022
GenomeScope2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 22:07, 15 March 2022
Bifrost
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:11, 6 December 2019
NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
DIYABC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] '''Note:''' this software is installed, but not supported as the upstream authors do not consider it

2 KB (300 words) - 14:41, 15 August 2022
OneFormer
[[Category:Software]][[Category:Imaging]][[Category:Image Processing]][[Category:AI]]

2 KB (246 words) - 14:25, 7 April 2023
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
Basemount
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (375 words) - 18:50, 10 June 2022
PROVEAN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa

3 KB (350 words) - 20:27, 12 August 2022
Eagle-rc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:30, 26 August 2020
Sniffles2
[[Category:Software]]

2 KB (291 words) - 20:42, 12 August 2022
Hgtector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (253 words) - 17:04, 10 October 2022
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
GSL
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

2 KB (300 words) - 17:27, 15 August 2022
DecontaMiner
[[Category:Software]]

3 KB (321 words) - 14:56, 2 March 2021
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
LFMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (337 words) - 19:50, 15 August 2022
Rosetta
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]] Rosetta is the premier software suite for modeling macromolecular

3 KB (302 words) - 20:37, 10 June 2022
HmmCleaner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:25, 27 August 2020
Bwa-mem2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (361 words) - 16:11, 27 May 2022

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