Search results

Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
FLAIR
[[Category:Software]][[Category:Genomics]]

3 KB (305 words) - 18:34, 12 July 2023
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
Platypus
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (435 words) - 19:21, 10 June 2022
RelocaTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 20:32, 14 January 2020
Chimera
[[Category:Software]][[Category:Biology]][[Category:Modeling]]

3 KB (296 words) - 18:27, 12 August 2022
SHRiMP
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril

2 KB (269 words) - 22:55, 21 August 2022
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
Ngs-bits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (296 words) - 16:57, 10 June 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
TREEPUZZLE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (450 words) - 19:31, 10 June 2022
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
KaKs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

2 KB (281 words) - 19:18, 15 August 2022
Assembly-stats
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (293 words) - 14:56, 12 August 2022
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
Msvar
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.

2 KB (260 words) - 13:35, 19 August 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
Trvz
[[Category:Software]]

2 KB (273 words) - 14:46, 28 July 2023
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
PAPI
[[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} 

3 KB (360 words) - 16:36, 21 August 2022
TRANSIT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:29, 6 December 2019
Trimmomatic
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (522 words) - 20:52, 12 August 2022
QD
[[Category:Software]][[Category: Library]][[Category: Math]][[Category:Compiler]]

2 KB (271 words) - 17:47, 15 August 2022
Mg-rast
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (267 words) - 21:21, 6 December 2019
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
Category:Healthcare
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Chipyard
[[Category:Software]][[Category:Simulation]] ...FPGA-accelerated simulation (FireSim), automated VLSI flows (Hammer), and software workload generation for bare-metal and Linux-based systems (FireMarshal). C

3 KB (360 words) - 14:30, 11 October 2022
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Hylite
[[Category:Software]]

3 KB (325 words) - 21:51, 24 February 2023
MetaCompare
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 21:21, 6 December 2019
Preseq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://smithlab.usc.edu/plone/software/librarycomplexity}}

3 KB (303 words) - 20:26, 12 August 2022
Nanofilt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 13:48, 19 August 2022
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
ALLPATHS-LG
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}

2 KB (299 words) - 12:36, 12 August 2022
Tecplot 360 EX
[[Category:Software]][[Category:Math]][[Category:Animation]][[Category:Fluid Dynamics]][[Catego

3 KB (337 words) - 14:56, 19 August 2022
FLEA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 22:01, 27 August 2020
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
AdmixTools
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes

3 KB (400 words) - 20:50, 11 August 2022
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
Bloomfiltertrie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:18, 6 December 2019
Alphaimpute
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}

3 KB (337 words) - 12:37, 12 August 2022
Macrel
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 17:45, 10 May 2024
SIGffRid
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:17, 1 June 2022
Rrnaselector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (304 words) - 21:24, 6 December 2019
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
ReFrame
[[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]

2 KB (240 words) - 21:40, 21 August 2022
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
Metaphlan
[[Category:Software]][[Category: Phylogenetics]]

2 KB (258 words) - 15:21, 26 August 2022
Cgmaptools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 21:01, 6 December 2019
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
Bxh xcede tools
[[Category:Software]][[Category:Biology]]

2 KB (291 words) - 18:22, 12 August 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
DCMTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]][[Category:Neuroscience]] ...+. It comes in complete source code and is made available as "open source" software.

3 KB (304 words) - 20:31, 10 June 2022
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
GDB
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}

4 KB (494 words) - 16:13, 9 January 2023
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
Langdetect
[[Category:Software]]

2 KB (242 words) - 17:01, 23 August 2022
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
MAGeCKFlute
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 20:24, 15 August 2022
BSseeker2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:40, 10 June 2022
TensorFlow
[[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a

6 KB (790 words) - 15:25, 14 December 2022
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
UFCG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (431 words) - 17:41, 20 September 2023
Bsmap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Biology]] BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated C

3 KB (304 words) - 18:22, 12 August 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
SICER
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software.htm}}

2 KB (279 words) - 16:35, 10 June 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
Phyluce
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultr

4 KB (517 words) - 18:23, 21 August 2022
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
VCF-kit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 17:26, 22 August 2022
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
Z1Plus
[[Category:Software]]

2 KB (293 words) - 19:36, 6 September 2023

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