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Eagle-rc
...s.biomedcentral.com/articles/10.1186/s12920-018-0342-1 Tony Kuo and Martin C Frith and Jun Sese and Paul Horton. EAGLE: Explicit Alternative Genome Like

2 KB (270 words) - 22:30, 26 August 2020
QT
QT is a cross-platform application and UI framework for developers using C++ or QML, a CSS & JavaScript like language.

2 KB (257 words) - 20:57, 21 August 2022
MetaSV
...oup.com/bioinformatics/article/31/16/2741/321286 Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. W

2 KB (277 words) - 21:21, 6 December 2019
IMa2p
IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under

2 KB (277 words) - 21:21, 6 December 2019
Phylonet
C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzi

2 KB (263 words) - 21:23, 6 December 2019
GLPK
...(MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

2 KB (272 words) - 17:11, 15 August 2022
QD
...ead-safe, but, unlike MPFUN2020, is available with both a Fortran-90 and a C++ high-level interface.

2 KB (271 words) - 17:47, 15 August 2022
Deepsig
Savojardo C., Martelli P.L., Fariselli P., Casadio R. DeepSig: deep learning improves s

2 KB (266 words) - 04:24, 6 December 2022
NetCDF-C
|{{#vardefine:app|netcdf-c}}

2 KB (278 words) - 14:47, 19 August 2022
MiRanda
...finding genomic targets for microRNAs. This algorithm has been written in C and is available as an open-source method under the GPL. MiRanda was develo

2 KB (278 words) - 21:21, 6 December 2019
Rust
...both functional and imperative paradigms. Rust is syntactically similar to C++, but its designers intend it to provide better memory safety while still

2 KB (285 words) - 21:24, 6 December 2019
Grib api
The ECMWF GRIB API is an application program interface accessible from C,

2 KB (278 words) - 17:22, 15 August 2022
FastSpar
FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm

2 KB (283 words) - 15:26, 15 August 2022
AEGeAn
...ble programs as well as several data structures and modules callable via a C API.

2 KB (287 words) - 16:31, 10 June 2022
SNeP
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories esti

2 KB (278 words) - 16:23, 10 June 2022
UDUNITS
1) a C library for units of physical quantities.

2 KB (279 words) - 17:17, 22 August 2022
RMATS turbo
rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). The

2 KB (289 words) - 19:26, 2 June 2022
Gflags
The gflags package contains a C++ library that implements commandline flags processing. It includes built-i

2 KB (291 words) - 17:07, 15 August 2022
RMATS-turbo
rMATS turbo is the C/Cython version of rMATS (refer

2 KB (292 words) - 18:14, 8 March 2022
CGAL
and reliable geometric algorithms in the form of a C++ library.The Computational

2 KB (293 words) - 15:32, 6 June 2022
Gaussian GUI
**<pre>gui start -e gv -c 1 -m 8 -t 4</pre>

2 KB (341 words) - 19:17, 25 January 2023
SQANTI3
...i.nlm.nih.gov/pmc/articles/PMC5848618/ Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequence

2 KB (290 words) - 20:35, 27 May 2022
CGATools
...plete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include geno

2 KB (291 words) - 13:26, 15 August 2022
Blitz
Blitz++ is a C++ class library for scientific computing which provides performance on par

3 KB (303 words) - 21:19, 6 December 2019
TRITONSERVER
...rver. For edge deployments, Triton is available as a shared library with a C API that allows the full functionality of Triton to be included directly in

2 KB (298 words) - 20:06, 21 August 2022
CFITSIO
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexibl

2 KB (291 words) - 13:26, 15 August 2022
Bgenix
Bgenix is a reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software,

2 KB (291 words) - 12:52, 15 August 2022
NCBI C++ Toolkit
NCBI C++ Toolkit provides free, portable, public domain libraries with no restrict

3 KB (306 words) - 14:25, 19 August 2022
Autometa
..., J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgu

3 KB (300 words) - 21:19, 6 December 2019
Package-GFE
...and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for mult

2 KB (280 words) - 16:45, 10 June 2022
Mono
...plementation of Microsoft's .NET Framework based on the ECMA standards for C# and the Common Language Runtime. A growing family of solutions and an acti

2 KB (289 words) - 17:41, 15 August 2022
Sputnik
Sputnik is a C language program that searches dna sequence files in Fasta format for micro

2 KB (311 words) - 15:50, 22 August 2022
PhiSpy
PhiSpy is a computer program written in C++, Python and R to identify prophages in a complete bacterial genome sequen

2 KB (291 words) - 21:23, 6 December 2019
BloomTree
C++ and is open source.

3 KB (302 words) - 16:49, 10 June 2022
Bamtools
BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM

2 KB (289 words) - 18:02, 12 August 2022
NAMD
James C. Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Eliza

2 KB (245 words) - 13:45, 19 August 2022
PRINSEQ++
Chan chan PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter,

2 KB (298 words) - 18:11, 15 April 2020
SURVIVOR
[https://www.nature.com/articles/ncomms14061 Jeffares, Daniel C; Jolly, Clemency; Hoti, Mimoza; Speed, Doug; Shaw, Liam; Rallis, Charalampo

3 KB (296 words) - 21:24, 6 December 2019
MSMBuilder
...ls (MSMs). It is primarily written in the python programming language with C extensions for the most time consuming routines. MSMs are a powerful means

2 KB (288 words) - 16:38, 10 June 2022
Mega2
Baron RV, Kollar C, Mukhopadhyay N, Weeks DE (2014) Mega2: validated data-reformatting for lin

3 KB (310 words) - 21:21, 6 December 2019
MPFR
The MPFR library is a C library for multiple-precision floating-point computations with correct rou

2 KB (302 words) - 21:22, 6 December 2019
Mlpack
Written in C++ and built on the Armadillo linear algebra library, the ensmallen numerica

3 KB (301 words) - 19:43, 15 December 2020
MetaCompare
[https://www.ncbi.nlm.nih.gov/pubmed/29718191 Oh, M., Pruden, A., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018). MetaCompare: A computational p

3 KB (304 words) - 21:21, 6 December 2019
PHYUTILITY
Smith, S. A. and Dunn, C. W. (2008) Phyutility: a phyloinformatics tool for trees, alignments, and m

2 KB (296 words) - 20:22, 12 August 2022
FEniCS
...models into efficient finite element code. With the high-level Python and C++ interfaces to FEniCS, it is easy to get started, but FEniCS offers also p

3 KB (301 words) - 21:20, 6 December 2019
Isonclust2
isONclust2 is implemented in C++, which makes it fast enough to cluster large transcriptomic datasets prod

3 KB (303 words) - 15:23, 28 October 2022
Mitsuba2
Mitsuba 2 is a research-oriented rendering system written in portable C++17. It consists of a small set of core libraries and a wide variety of plu

3 KB (302 words) - 20:45, 18 August 2022
MIGRATE-N
...ult to use? In G. Bertorelle, M. W. Bruford, H. C. Hauffe, A. Rizzoli, and C. Vernesi, editors, Population Genetics for Animal Conservation, volume 17 o

5 KB (636 words) - 16:05, 22 December 2022
Gaussian
...aramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G.

6 KB (918 words) - 14:39, 8 March 2023
Metaxa2
...1/1755-0998.12399/abstract Bengtsson-Palme J, Hartmann M, Eriksson KM, Pal C, Thorell K, Larsson DGJ, Nilsson RH: Metaxa2: Improved Identification and T

3 KB (300 words) - 19:29, 18 August 2022

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