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• Zorro
  ZORRO is a hybrid sequencing technology assembler. It merges two sets of pre-assembled contigs into a more contiguous and con
  2 KB (284 words) - 17:54, 22 August 2022
• MITObim
  ...lly developed for Illumina data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data from the Iontorrent, 454 and PacBi
  3 KB (301 words) - 15:20, 22 April 2020
• Scallop
  Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as
  2 KB (289 words) - 14:44, 26 January 2021
• Haploflow
  Haploflow is a strain-aware viral genome assembler for short read sequence data. It uses a flow algorithm on a deBruijn graph
  2 KB (287 words) - 20:31, 3 January 2022
• SCOP
  be produced by any assembler. The input read data of SCOP is paired-end or
  2 KB (295 words) - 17:31, 15 August 2022
• Raven
  Raven is a de novo genome assembler for long uncorrected reads.
  2 KB (284 words) - 21:14, 20 November 2023
• Compacta
  the assembler to a smaller set of representative sequences, preserving
  3 KB (294 words) - 13:52, 15 August 2022
• Clover
  Clover is a clustering-oriented de novo assembler for Illumina sequences,
  2 KB (296 words) - 13:47, 15 August 2022
• SMARTdenovo
  SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore (ONT) data. It produces an assembly from all
  2 KB (296 words) - 21:24, 6 December 2019
• NOVOPlasty
  NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.
  3 KB (310 words) - 21:23, 6 December 2019
• Hifiasm
  Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and
  3 KB (303 words) - 22:23, 27 August 2020
• YASRA
  YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, whi
  3 KB (304 words) - 20:56, 12 August 2022
• Wtdbg
  Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ON
  3 KB (310 words) - 17:44, 22 August 2022
• Oases
  Oases is a de novo transcriptome assembler designed to produce transcripts
  2 KB (293 words) - 17:25, 19 August 2022
• MIRA
  |{{#vardefine:url|http://mira-assembler.sourceforge.net/}} ...ble, CLR not yet. Please visit [http://sourceforge.net/apps/mediawiki/mira-assembler/ the app website] for more details.
  2 KB (313 words) - 20:42, 18 August 2022
• Miniasm
  Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by
  3 KB (306 words) - 20:10, 18 August 2022
• ALLPATHS-LG
  ALLPATHS-LG is a short read assembler. It has been designed to use reads
  2 KB (299 words) - 12:36, 12 August 2022
• Flye
  Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanop
  3 KB (317 words) - 21:20, 6 December 2019
• NextDenovo
  NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a "correct-then-assemble" strat
  3 KB (312 words) - 18:03, 10 May 2021
• IVA
  IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Ill
  2 KB (300 words) - 16:06, 7 December 2021

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