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• SLURM Scripts
  #REDIRECT [[Amber Job Sample Scripts]]
  38 bytes (5 words) - 17:37, 26 June 2017
• Matlab GUI Example
  ...dependency scheduling or incorporating GUI MATLAB tasks into larger launch scripts. In these cases you can use an advanced job script to start a MATLAB GUI s
  3 KB (375 words) - 21:32, 24 October 2022
• Example SLURM-GPU-Job-Scripts
  42 bytes (6 words) - 22:02, 8 February 2017
• Vasp Job Scripts
  2 KB (191 words) - 17:45, 2 April 2024
• Hgraph2graph Job Scripts
  2 KB (274 words) - 17:09, 14 June 2022
• Sample SLURM Scripts
  .../, and can be copied from there. If you choose to copy one of these sample scripts, please make sure you understand what each <code>#SBATCH</code> directive m ...or communication between jobs, view [[Multi-Threaded & Message Passing Job Scripts]]
  11 KB (1,685 words) - 20:52, 13 May 2024
• ParaView Job Scripts
  834 bytes (102 words) - 16:25, 16 February 2022
• Example SLURM-Parallel-Job-Scripts
  42 bytes (6 words) - 22:00, 8 February 2017
• IMPUTE5 Job Scripts
  2 KB (202 words) - 20:14, 2 February 2022
• Cactus Job Scripts
  2 KB (236 words) - 15:11, 28 February 2022
• SMC++ Job Scripts
  1 KB (175 words) - 14:19, 25 March 2022
• Sniffles2 Job Scripts
  1 KB (150 words) - 15:09, 12 April 2022
• RNAFramework Job Scripts
  2 KB (255 words) - 16:33, 14 April 2022
• PGAP Job Scripts
  1 KB (140 words) - 14:30, 6 July 2022
• Blast Job Scripts
  2 KB (358 words) - 20:27, 3 June 2022
• MOOSE Job Scripts
  1 KB (132 words) - 15:22, 9 February 2023
• ORCA Job Scripts
  1 KB (174 words) - 22:50, 31 March 2024
• RMATS-turbo Job Scripts
  2 KB (212 words) - 18:16, 8 March 2022
• Amber Job Sample Scripts
  1 KB (171 words) - 21:18, 5 December 2022
• AutoDock-GPU Job Scripts
  1 KB (175 words) - 21:16, 6 April 2022
• Structure threader Job Scripts
  1 KB (163 words) - 12:34, 2 May 2022
• SRA-Human-Scrubber Job Scripts
  1 KB (161 words) - 14:04, 27 May 2022
• Multi-Threaded & Message Passing Job Scripts
  Back to [[Sample SLURM Scripts]] __NOTOC__
  9 KB (1,347 words) - 19:05, 21 July 2023

Page text matches

• Bigslice
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (295 words) - 21:25, 14 September 2023
• Auto3DEM
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (433 words) - 15:24, 12 August 2022
• Clairvoyante
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (453 words) - 13:39, 15 August 2022
• Lbzip
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (274 words) - 14:23, 27 May 2022
• Triobinning
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (276 words) - 13:31, 15 August 2022
• SomaticSeq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 00:06, 22 August 2022
• Pyhdf
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (267 words) - 15:25, 3 June 2022
• Mlst
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (244 words) - 21:22, 6 December 2019
• Pm4py
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (336 words) - 22:06, 5 June 2023
• FSL
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (365 words) - 16:47, 17 January 2023
• Circlator
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (272 words) - 13:34, 15 August 2022
• OpenMPI
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (337 words) - 19:02, 21 July 2023
• Camino
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (291 words) - 18:22, 12 August 2022
• Shortbred
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (287 words) - 16:12, 24 November 2020
• Cx oracle
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 14:22, 15 August 2022
• GeNomad
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (332 words) - 13:25, 7 April 2023
• MiRge
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (279 words) - 21:22, 6 December 2019
• PRINSEQ++
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (298 words) - 18:11, 15 April 2020
• Nanocaller
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (351 words) - 15:41, 16 March 2023
• CellRanger
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (294 words) - 18:24, 12 August 2022
• P7zip
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (254 words) - 17:34, 15 August 2022
• Blast2GO CLI
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (282 words) - 20:19, 24 August 2022
• Nilearn
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (284 words) - 17:17, 19 August 2022
• Stumpy
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (430 words) - 15:16, 13 April 2023
• QIIME2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (435 words) - 15:15, 19 August 2022
• Satsuma
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (332 words) - 21:24, 6 December 2019
• RFMIX
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (244 words) - 14:01, 11 June 2020
• CFITSIO
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (291 words) - 13:26, 15 August 2022
• Crass
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (300 words) - 14:02, 15 August 2022
• Genesum
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (277 words) - 21:21, 6 December 2019
• GLPK
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (272 words) - 17:11, 15 August 2022
• CNCI
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (374 words) - 14:09, 23 April 2021
• Geopython
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (246 words) - 12:22, 26 August 2022
• PAML
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (367 words) - 20:12, 12 August 2022
• Ncbi cli
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (306 words) - 15:47, 9 June 2023
• Braker
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (261 words) - 22:28, 26 August 2020
• Pyweka
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (265 words) - 17:35, 1 June 2022
• Regtools
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (254 words) - 21:41, 21 August 2022
• IgBLAST
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (338 words) - 19:06, 12 August 2022
• GraphMap2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (240 words) - 19:06, 21 July 2022
• Cliquesnv
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (301 words) - 20:24, 1 May 2024
• Relernn
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (261 words) - 21:20, 6 February 2024
• Velocyto
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (275 words) - 00:33, 25 May 2023
• Came
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (371 words) - 21:02, 6 December 2019
• Embree
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (343 words) - 15:01, 15 August 2022
• Localbrainage
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (238 words) - 19:30, 12 August 2022
• ALLMAPS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (361 words) - 21:11, 6 December 2019
• METIS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (247 words) - 19:40, 18 August 2022
• Xapian
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (265 words) - 15:42, 10 June 2022
• Vermouth-martinize
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (323 words) - 14:21, 1 November 2021
• Kraken
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  4 KB (483 words) - 19:28, 12 August 2022
• HPG Data Management
  ...gh performance, so try to use it sparingly and for smaller files, like job scripts or analysis reports to be copied to your local system. You must be connect
  4 KB (587 words) - 19:27, 15 April 2023
• BEAST2-XML
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (290 words) - 14:20, 2 September 2020
• Bowtie
  * HPC_BOWTIE_SCR - scripts directory
  3 KB (443 words) - 13:06, 15 August 2022
• Vasp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (538 words) - 22:38, 31 March 2024
• PyPHLAWD
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (263 words) - 21:24, 6 December 2019
• Metaxa2
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (300 words) - 19:29, 18 August 2022
• Nanocomp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (282 words) - 12:22, 26 August 2022
• Hapsembler
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (332 words) - 18:15, 15 August 2022
• Discvrseq
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (310 words) - 20:10, 11 April 2022
• MIKE
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (259 words) - 20:26, 24 August 2022
• InterProScan
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (334 words) - 19:23, 12 August 2022
• Smalt
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (342 words) - 17:24, 3 June 2022
• MetaPhlAn2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (319 words) - 19:28, 2 June 2022
• PsiCLASS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  4 KB (480 words) - 15:00, 14 December 2022
• Uropa
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (337 words) - 15:42, 6 September 2022
• SUPPA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (328 words) - 21:24, 6 December 2019
• HPG Scheduling
  ...bs. Users can create SLURM job scripts to submit jobs to the system. These scripts can, and should, be modified in order to control several aspects of your jo * See the [[Sample SLURM Scripts]] for several SLURM job script examples
  4 KB (656 words) - 18:36, 9 February 2024
• QualiMap
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (326 words) - 19:32, 24 August 2022
• PhyloFlash
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (279 words) - 00:09, 29 October 2020
• Metabolic
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (304 words) - 19:26, 18 August 2022
• Garfield
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (342 words) - 22:51, 30 November 2022
• MAGeCK
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (259 words) - 21:21, 6 December 2019
• Assexon
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (243 words) - 20:17, 10 February 2020
• ParaView Client
  (see [[ParaView Job Scripts]] page for an example server job script.)
  3 KB (452 words) - 20:45, 18 May 2023
• Mitohifi
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (312 words) - 17:01, 21 July 2022
• Cantera
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (308 words) - 13:19, 15 August 2022
• CIMS
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (315 words) - 17:21, 10 June 2022
• Scallop
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (289 words) - 14:44, 26 January 2021
• Genmap
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (256 words) - 21:20, 17 May 2023
• Wine
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (367 words) - 17:43, 22 August 2022
• VeryFastTree
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (329 words) - 21:03, 12 February 2021
• LSD2
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (269 words) - 20:45, 30 April 2020
• 4p
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  2 KB (285 words) - 20:36, 11 August 2022
• ORCA
  |{{#vardefine:job|1}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (399 words) - 14:03, 2 April 2024
• PhyloSift
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (255 words) - 15:45, 19 August 2022
• Tracula
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (342 words) - 20:51, 12 August 2022
• Face morpher
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> Scripts will automatically detect frontal faces and skip images if none is detected
  2 KB (264 words) - 15:18, 15 August 2022
• Bamm
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (322 words) - 18:00, 12 August 2022
• OpenCL
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> <!--PBS scripts-->
  3 KB (365 words) - 17:52, 19 August 2022
• Booster
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (283 words) - 21:11, 6 December 2019
• Imoka
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (346 words) - 17:07, 27 May 2022
• PBGCpp
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (229 words) - 20:05, 31 May 2022
• PyVCF
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (236 words) - 20:08, 21 August 2022
• GlimmerHMM
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (334 words) - 17:09, 15 August 2022
• Multi-Threaded & Message Passing Job Scripts
  Back to [[Sample SLURM Scripts]] __NOTOC__
  9 KB (1,347 words) - 19:05, 21 July 2023
• HMMRATAC
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  2 KB (268 words) - 14:22, 7 May 2021
• Pathoscope
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (323 words) - 17:02, 21 August 2022
• SnpEff
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> * HPC_{{uc:{{#var:app}}}}_BIN - directory with executable scripts
  4 KB (562 words) - 15:19, 5 January 2023
• AMRPlusPlus
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> <!--Job Scripts-->
  3 KB (365 words) - 21:19, 6 December 2019

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