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- 3PCLR
- 3d-dna
- 4p
- AAFTF
- ABRicate
- ABruijn
- ABySS
- ACLs
- ACTC
- ADFRsuite
- ADMB
- ADMIXTURE
- AEGeAn
- AFNI
- AGAT
- AGfusion
- AI Education and Training
- AI Examples
- AI Help
- AI Models
- AI Reference Datasets
- AI reference dataset hosting policy
- ALFA
- ALLMAPS
- ALLPATHS-LG
- AMAS
- AMBER
- AMICO
- AMOS
- AMP
- AMPtk
- AMRPlusPlus
- ANDI
- ANGSD
- ANNOVAR
- ANTs
- APT
- ARC
- ARKS
- ARPACK
- ART
- ASE-ANI
- ASHS
- ASPECT
- ASTRAL
- ASTRID
- AStalavista
- ATAT
- ATLAS
- ATRAM
- AWSCLI
- Account and QOS limits under SLURM
- AdapterRemoval
- Add New App Page
- Admin Tools
- AdmixTools
- AfterQC
- Albacore
- Albumentations
- Alder
- Alevin-fry
- Alfred
- AliStat
- Alienhunter
- AlleleCount
- Allhic
- AlphaFold
- AlphaMate
- AlphaPulldown
- Alphaimpute
- AltAnalyze
- AmPEPpy
- Amber Job Sample Scripts
- Ambertools
- Amphora2
- Ampligraph
- Amptorch
- Amrfinderplus
- Amuse
- Ancestryhmm
- Anchorwave
- AnnoTALE
- Annocript
- Annotated SLURM Script
- Ansible
- Ansysem
- AntiSMASH
- Anvio
- Applications
- Applications FAQ
- Appreci8
- Apptainer
- Apptests
- Aquamis
- Arcashla
- Aria2
- Armadillo
- ArrayFire
- Array ID Indexes
- Arriba