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- Mitofinder is a pipeline to assemble mitochondrial genomes and extract mitochondrial genes from trim2 KB (255 words) - 21:23, 6 December 2019
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq2 KB (247 words) - 20:29, 12 August 2022
- This repository contains an analysis pipeline developed to characterize WGS output2 KB (261 words) - 16:22, 15 March 2023
- Improved bioinformatic pipeline to identify and quantify circRNA expression2 KB (255 words) - 16:51, 30 January 2023
- Toil is a scalable, efficient, cross-platform pipeline management system, written entirely in Python, and designed around the prin2 KB (258 words) - 20:47, 12 August 2022
- Pipeline developed by Mission Bio for the analysis of single-cell sequencing data in2 KB (258 words) - 19:07, 1 June 2022
- CWL-defined pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks2 KB (254 words) - 18:51, 15 August 2022
- ...r efficient, versatile mapping of mouse brain)is an open source automation pipeline suitable for brain data from different microscopy platforms.2 KB (263 words) - 13:01, 15 August 2022
- |{{#vardefine:url|https://github.com/veg/flea-pipeline}} FLEA is a bioinformatics pipeline for analyzing longitudinal sequencing data from the Pacific Biosciences RS-2 KB (260 words) - 22:01, 27 August 2020
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneM2 KB (261 words) - 22:28, 26 August 2020
- Denovo Genome Analysis Pipeline for Prokaryotic Species2 KB (272 words) - 21:20, 6 December 2019
- Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for2 KB (256 words) - 21:20, 17 May 2023
- ...and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide associatio2 KB (269 words) - 18:52, 12 August 2022
- The Sashimi project develops the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics:2 KB (266 words) - 20:22, 24 August 2022
- [[Category:Pipeline]]2 KB (275 words) - 17:53, 15 August 2022
- Connectome Mapper 3 implements a full diffusion MRI processing pipeline that understands BIDS datasets, from raw Diffusion / T1 / T2 data to multi-2 KB (269 words) - 13:55, 15 August 2022
- TAPIS (Transriptome Analysis Pipeline from Isoform Sequencing) is a program for correcting and aligning long read2 KB (273 words) - 16:14, 10 June 2022
- ...link.springer.com/article/10.1007%2Fs12275-021-1154-0 Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity2 KB (282 words) - 15:13, 15 August 2022
- Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the pr2 KB (286 words) - 18:13, 23 August 2022
- Velocyto includes a command line tool and an analysis pipeline2 KB (275 words) - 00:33, 25 May 2023
- CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identif2 KB (278 words) - 13:58, 18 October 2022
- ...Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequence assemb2 KB (274 words) - 21:21, 6 December 2019
- Dragonflye is a pipeline that aims to make assembling Oxford Nanopore reads quick and easy. Still wo2 KB (283 words) - 20:18, 12 April 2022
- ...igh-performance and automatic functional annotation tasks. This Annotation Pipeline allows your to integrate and automate your functional annotation task in a2 KB (282 words) - 20:19, 24 August 2022
- phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition o2 KB (279 words) - 00:09, 29 October 2020
- The SeekDeep pipeline is intended for use on targeted amplicon sequencing data for haplotype freq2 KB (281 words) - 17:03, 24 July 2023
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses2 KB (288 words) - 16:47, 17 October 2023
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identify2 KB (287 words) - 16:12, 24 November 2020
- Macrel: (Meta)genomic AMP Classification and Retrieval is a pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.2 KB (279 words) - 17:45, 10 May 2024
- C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumin2 KB (281 words) - 13:16, 15 August 2022
- FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.2 KB (281 words) - 15:56, 22 March 2024
- CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing exp2 KB (282 words) - 13:25, 11 October 2022
- This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation2 KB (287 words) - 19:56, 6 November 2020
- ...a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of feat2 KB (290 words) - 16:53, 6 June 2022
- construction pipeline. The blocks coordinates are output in GFF format and2 KB (284 words) - 20:40, 12 August 2022
- iRAP is a flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of exi2 KB (296 words) - 20:10, 24 August 2022
- CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data2 KB (275 words) - 15:00, 30 March 2022
- Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and2 KB (288 words) - 20:23, 23 May 2022
- CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs f2 KB (283 words) - 21:36, 1 April 2022
- RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet p3 KB (293 words) - 13:48, 20 May 2020
- An automated binning pipeline for single metagenomes, in particular host-associated and highly complex on3 KB (300 words) - 21:19, 6 December 2019
- Galaxy-ML is a web machine learning end-to-end pipeline building framework, with special support to biomedical data.2 KB (284 words) - 14:51, 27 January 2023
- ...genome assembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that alleviates these issues.3 KB (312 words) - 22:41, 21 August 2022
- ...sing Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers b3 KB (301 words) - 18:39, 15 August 2022
- MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances of functional ortho3 KB (305 words) - 13:52, 23 September 2021
- ...onski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data.3 KB (296 words) - 17:20, 22 August 2022
- ...l should contain the same set of sequences that were input to the original pipeline run, although the order will not be preserved. The FASTQs will be emitted i3 KB (318 words) - 13:56, 8 March 2021
- PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation3 KB (321 words) - 21:23, 6 December 2019
- The tbprofiler pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then3 KB (312 words) - 21:31, 10 February 2023
- SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length trans3 KB (321 words) - 21:24, 6 December 2019