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WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
Category:Sequencing
Sequencing Software on HiPerGator [[Category:Software]][[Category:Research]]

146 members (0 subcategories, 0 files) - 21:43, 24 October 2022
Wgsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (343 words) - 21:29, 6 December 2019
TACO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 18:53, 1 June 2022
REAPR
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:url|http://www.sanger.ac.uk/resources/software/reapr/#t_2}}

3 KB (320 words) - 21:35, 21 August 2022
Brkraw
[[Category:Software]]

2 KB (287 words) - 13:35, 24 October 2022
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
Mixmogam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 22:42, 8 September 2020
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
BUCKy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (386 words) - 13:15, 15 August 2022
Astropy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 15:18, 12 August 2022
Computer Vision
This page describes the collection of Computer Vision software on HiperGator. Computer vision is a crucial field of artificial intelligenc ...ow|tensorflow]] or ngc-tensorflow''': TensorFlow is a free and open-source software library for machine learning and artificial intelligence. '''ngc-tensorFlow

4 KB (563 words) - 20:59, 21 December 2022
Fqtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are su

3 KB (359 words) - 16:47, 15 August 2022
PyRosetta
[[Category:Software]][[Category:biology]][[Category:structure]][[Category:modeling]]

2 KB (267 words) - 21:24, 6 December 2019
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
Magicblast
[[Category:Software]]

2 KB (304 words) - 16:29, 6 October 2022
Alfred
[[Category:Software]]

3 KB (294 words) - 19:29, 14 November 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Gffread
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 19:02, 12 August 2022
Longshot
[[Category:Software]][[Category:Genomics]]

3 KB (352 words) - 20:04, 26 July 2023
Orthograph
[[Category:Software]][[Category:Biology]]

2 KB (261 words) - 18:00, 19 August 2022
Racon
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 21:24, 21 August 2022
EDirect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (357 words) - 14:55, 15 August 2022
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
Crux
[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden

2 KB (293 words) - 18:39, 12 August 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
FALCON fc run cfg
[[Category:Software]]

2 KB (248 words) - 20:31, 2 August 2021
VIRULIGN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 19:53, 20 April 2020
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
SortaDate
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:42, 4 May 2020
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
GeneMark-ES
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (303 words) - 16:44, 27 May 2022
AntiSMASH
[[Category:Software]][[Category:Phylogenetics]]

3 KB (409 words) - 21:11, 6 December 2019
PLAST
[[Category:Software]][[Category:Biology]] PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing

3 KB (320 words) - 20:23, 12 August 2022
Rmats2sashimiplot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 21:56, 21 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
Novoalign
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (370 words) - 17:19, 19 August 2022
PAML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/paml.html}}

3 KB (367 words) - 20:12, 12 August 2022
Radorgminer
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

3 KB (297 words) - 21:55, 6 July 2022
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
ATAT
[[Category:Software]][[Category:Material Science]]

2 KB (247 words) - 15:18, 12 August 2022
IM and IMa
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software}}

2 KB (299 words) - 18:44, 15 August 2022
HelitronScanner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
Rolling Upgrade from RHEL7 to RHEL8
...at Enterprise Linux version 7 (RHEL-7) to version 8 (RHEL-8). The upgraded software environment includes updates to important components including, but not lim Some programs/workflows run in the updated software environment without any modification, and some require recompilation or ada

1 KB (164 words) - 16:06, 28 September 2023
Xerces
[[Category:Software]][[Category:phylogenetics]]

3 KB (306 words) - 21:29, 6 December 2019
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
Gmap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (450 words) - 17:11, 15 August 2022
CUDA Examples
[[Category:Software]]

12 KB (1,540 words) - 17:09, 21 December 2022
CRISPRanalyzer
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (294 words) - 14:12, 15 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Phylopypruner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 18:41, 27 May 2022
MODELLER
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]]

3 KB (364 words) - 19:53, 12 August 2022
Circleator
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:18, 6 December 2019
Fairseq
[[Category:Software]][[Category:Modeling]][[Category:Machine Learning]]

3 KB (296 words) - 15:18, 15 August 2022
Vcf-validator
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 17:27, 22 August 2022
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
Python-core
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (318 words) - 20:04, 21 August 2022
Ambertools
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

3 KB (426 words) - 14:18, 10 July 2023
GOMAP
[[Category:Software]][[Category:Biology]]

2 KB (263 words) - 17:17, 15 August 2022
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
Zagros
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}

2 KB (289 words) - 17:54, 22 August 2022
DiCal2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (245 words) - 21:21, 6 December 2019
Hgraph2graph
[[Category:Software]] The scripts for this software should be execytes using the path from the HPC_HGRAPH2GRAPH_BIN environment

2 KB (279 words) - 17:06, 14 June 2022
RSeQC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (328 words) - 17:48, 10 June 2022
Trelis
[[Category:Software]][[Category:Math]] ...for complex FEA and CFD simulation. It is based on the time-proven CUBIT™ software from Sandia National Laboratories. For more than two decades, csimsoft and

2 KB (291 words) - 17:05, 22 August 2022
Sputnik
[[Category:Software]][[Category:Biology]]

2 KB (311 words) - 15:50, 22 August 2022
YAHA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (320 words) - 20:56, 12 August 2022
Ugtm
[[Category:Software]][[Category:Statistics]][[Category:Modeling]]

2 KB (247 words) - 16:58, 6 June 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
TriMetAss
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/trimetass/}}

3 KB (344 words) - 20:52, 12 August 2022
Erpin
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://rna.igmors.u-psud.fr/Software/erpin.php}}

3 KB (377 words) - 21:21, 6 December 2019
READemption
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:58, 1 June 2022
CNVnator
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (251 words) - 15:34, 10 June 2022
Scons
[[Category:Software]][[Category:Programming]] ...on scripts. This gives SCons many powerful capabilities not found in other software build tools.

2 KB (293 words) - 21:24, 6 December 2019
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
GraphViz
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter

2 KB (276 words) - 19:03, 12 August 2022
Bruker2nifti
[[Category:Software]][[Category:Phylogenetics]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]

3 KB (300 words) - 15:31, 3 June 2022
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
Predector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 20:21, 31 May 2022
CisTEM
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://cistem.org/software}}

3 KB (349 words) - 13:35, 15 August 2022
Topd
[[Category:Software]][[Category:Phylogenetics]] ...'''Split, Quartets & Triplets''', and '''Disagree'''. Each option of this software is also complemented with a random analysis to test the null hypothesis tha

3 KB (439 words) - 21:24, 31 August 2023
MIDAS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 17:23, 10 June 2022
OpenMPI
[[Category:Software]][[Category:Programming]][[Category:Library]] ...the best MPI library available. Open MPI offers advantages for system and software vendors, application developers and computer science researchers.

3 KB (337 words) - 19:02, 21 July 2023
KisSplice
[[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It

3 KB (359 words) - 19:33, 15 August 2022
MOABS
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 19:53, 12 August 2022
Edyeet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 19:43, 4 November 2020
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
Tuxedo
[[Category:Software]][[Category:Biology]] See individual software wiki pages for more details.

598 bytes (81 words) - 20:53, 12 August 2022
Rust
[[Category:Software]][[Category:Programming]]

2 KB (285 words) - 21:24, 6 December 2019
MafFilter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 17:01, 24 February 2020
NeEstimator
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.molecularfisherieslaboratory.com.au/neestimator-software/}}

3 KB (375 words) - 19:56, 12 August 2022
P7zip
[[Category:Software]][[Category:Utility]]

2 KB (254 words) - 17:34, 15 August 2022
Circos
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}

3 KB (409 words) - 13:35, 15 August 2022
PyDeface
[[Category:Software]][[Category:Imaging]]

2 KB (237 words) - 20:34, 24 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
Gpufit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 19:34, 26 May 2022
Coreutils
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/coreutils/}}

2 KB (301 words) - 14:09, 15 August 2022
CASM
[[Category:Software]][[Category:Physics]] CASM is an open source software package designed to perform first-principles statistical mechanical studies

4 KB (453 words) - 13:20, 15 August 2022

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