Search results

Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
Xlsx2csv
[[Category:Software]]

2 KB (241 words) - 20:08, 24 October 2022
Category:Geospatial
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
SCOP
[[Category:Software]]

2 KB (295 words) - 17:31, 15 August 2022
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
Template:App Main
<noinclude>[[Category:Templates]]</noinclude><includeonly>[[Category:Software]]</includeonly>

2 KB (229 words) - 20:58, 6 December 2019
Category:Structure
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
Magicblast
[[Category:Software]]

2 KB (304 words) - 16:29, 6 October 2022
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
Moni
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (341 words) - 13:31, 15 August 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
DeTiN
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (249 words) - 14:39, 15 August 2022
ITSx
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}

2 KB (275 words) - 19:52, 10 February 2020
Hail
[[Category:Software]]

3 KB (353 words) - 17:42, 19 October 2021
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
DALIGNER
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:28, 15 August 2022
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
Syri
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (324 words) - 13:31, 15 August 2022
Modulus
[[Category:Software]]

3 KB (338 words) - 17:43, 29 August 2022
AI Help
== AI Software == A comprehensive software stack for AI research is available on HiPerGator for both CPU and GPU accel

6 KB (870 words) - 17:17, 22 April 2024
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
CIRCexplorer2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 21:03, 6 December 2019
BUSCO
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

5 KB (607 words) - 19:38, 27 March 2023
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
Coverm
[[Category:Software]][[Category:Biology]][[Category:Metagenomics]]

2 KB (290 words) - 18:14, 27 September 2023
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
CodonPhyML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 13:25, 23 July 2020
Jupyter Notebooks
[[Category:Software]][[Category:Python]][[Category:Machine Learning]] __NOTOC__

18 KB (2,983 words) - 18:58, 23 March 2023
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
Talesf
[[Category:Software]][[Category:Phylogenetics]]

2 KB (256 words) - 21:29, 6 December 2019
Flye
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:20, 6 December 2019
FALCON
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (395 words) - 15:19, 15 August 2022
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
Gffcompare
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 16:48, 27 May 2022
CUDA Examples
[[Category:Software]]

12 KB (1,540 words) - 17:09, 21 December 2022
CONN
[[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne

3 KB (293 words) - 20:32, 24 August 2022
DERIVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:51, 14 May 2021
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
MOSAIK
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} 

3 KB (414 words) - 11:59, 19 August 2022
ForeSeqs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 21:21, 6 December 2019
PBGCpp
[[Category:Software]][[Category:Phylogenetics]]

2 KB (229 words) - 20:05, 31 May 2022
BAPS
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}

3 KB (313 words) - 18:07, 12 August 2022
Mmaction2
[[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]

2 KB (277 words) - 19:16, 6 June 2023
Openmc
[[Category:Software]]

2 KB (287 words) - 20:25, 21 February 2024
Ambertools
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

3 KB (426 words) - 14:18, 10 July 2023
Genome Graph Annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 22:08, 27 August 2020
Duchamp
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:08, 6 June 2022
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
Gurobi
[[Category:Software]][[Category:Math]][[Category:Programming]]

2 KB (269 words) - 12:22, 26 August 2022
Category:Shell
[[Category:CLI]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:29, 23 August 2022
BoltzTraP
[[Category:Software]][[Category:Physics]]

2 KB (279 words) - 16:19, 10 June 2022
SNPhylo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (340 words) - 17:48, 10 June 2022
OrthoFiller
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 20:02, 31 May 2022
YAHA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (320 words) - 20:56, 12 August 2022
Vscode
[[Category:Software]][[Category:Programming]]

3 KB (405 words) - 14:15, 26 February 2024
TEMP2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 15:09, 3 December 2021
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
Mlcoalsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...rl|https://bioinformatics.cragenomica.es/numgenomics/people/sebas/software/software.html}}

3 KB (324 words) - 21:22, 6 December 2019
OpenMM
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (315 words) - 15:30, 19 August 2022
EMBOSS
[[Category:Software]][[Category:Biology]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.

3 KB (372 words) - 15:01, 15 August 2022
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
Asset
[[Category:Software]]

2 KB (253 words) - 20:07, 15 June 2023
GraphViz
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter

2 KB (276 words) - 19:03, 12 August 2022
Msprime
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 22:49, 8 September 2020
Crossmapper
[[Category:Software]][[Category:phylogenetics]] ...d crossmapping when two or more organisms are sequenced as one sample. The software can be used for planning such kind of experimental setups as dual- or multi

3 KB (326 words) - 17:40, 31 January 2022
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
CNSpipeline
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:19, 6 December 2019
Nf-core
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (332 words) - 18:51, 15 August 2022
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
Pindel
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:23, 6 December 2019
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
Sabre
[[Category:Software]][[Category:Phylogenetics]]

3 KB (356 words) - 16:32, 2 November 2020
HapCUT2
[[Category:Software]]

3 KB (317 words) - 20:03, 8 March 2022
Bigslice
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (295 words) - 21:25, 14 September 2023
Sambamba
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (299 words) - 20:33, 12 August 2022
ADFRsuite
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (316 words) - 12:30, 12 August 2022
MethylDackel
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 17:55, 6 March 2020
NextPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:55, 30 November 2020
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
LobSTR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (259 words) - 15:19, 10 June 2022
GDB
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}

4 KB (494 words) - 16:13, 9 January 2023
Medusa
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
FastUniq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 16:37, 15 August 2022
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
Langdetect
[[Category:Software]]

2 KB (242 words) - 17:01, 23 August 2022
FAQ
For questions about specific software such as Python, OpenOnDemand, or Custom Installations, visit [[Application ...GPU partitions, but HWGUI is more dedicated to interface visualization for software whos GUI requires hardware acceleration, but it's not directed to high perf

7 KB (1,199 words) - 02:11, 17 April 2024

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