Search results

PEAR
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.exelixis-lab.org/web/software/pear}}

3 KB (312 words) - 17:25, 21 August 2022
Macaulay2
[[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry

2 KB (246 words) - 20:23, 15 August 2022
Nextclade
[[Category:Software]]

2 KB (260 words) - 19:03, 12 January 2023
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
Dcmstack
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (272 words) - 14:29, 15 August 2022
Mxnet
[[Category:Software]][[Category:healthcare]]

2 KB (265 words) - 22:02, 10 October 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
Uropa
[[Category:Software]]

3 KB (337 words) - 15:42, 6 September 2022
MSMBuilder
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

2 KB (288 words) - 16:38, 10 June 2022
Camino
[[Category:Software]][[Category:Imaging]][[Category:Biology]][[Category:Neuroscience]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn

3 KB (291 words) - 18:22, 12 August 2022
SourceTracker2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 14:19, 14 September 2020
Comp-D MPI
[[Category:Software]][[Category:Statistics]]

2 KB (264 words) - 16:54, 9 June 2022
PyCharm
[[Category:Software]][[Category:Programming]]

2 KB (229 words) - 12:24, 26 August 2022
BayesAss
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 21:13, 6 December 2019
BOLT-LMM
[[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f

2 KB (289 words) - 16:24, 2 January 2020
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
Blitz
[[Category:Software]][[Category:Library]]

3 KB (303 words) - 21:19, 6 December 2019
RMATS turbo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (289 words) - 19:26, 2 June 2022
Category:Physics
[[Category:Software]]

21 members (0 subcategories, 0 files) - 15:38, 19 September 2014
PBCCS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:07, 21 August 2022
Skmer
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
GDC-Client
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (311 words) - 18:57, 12 August 2022
FastANI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (380 words) - 21:21, 6 December 2019
MongoDB
[[Category:Software]][[Category:Database]]

3 KB (340 words) - 19:22, 11 February 2021
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
Flex
[[Category:Software]][[Category:Programming]]

2 KB (266 words) - 19:54, 3 June 2022
QIIME2
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

3 KB (435 words) - 15:15, 19 August 2022
PROVEAN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa

3 KB (350 words) - 20:27, 12 August 2022
AutoDock-GPU
[[Category:Software]][[Category:Chemistry]]

3 KB (332 words) - 15:25, 12 August 2022
Bgenix
...ten in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the

2 KB (291 words) - 12:52, 15 August 2022
QUAST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (361 words) - 21:01, 21 August 2022
Hardware Accelerated GUI Sessions
[[Category:Software]] ==Launching Hardware (HW) Accelerated GUI software==

342 bytes (45 words) - 13:18, 12 April 2023
Lrgapcloser
[[Category:Software]][[Category:Biology]]

3 KB (326 words) - 19:30, 12 August 2022
Wgs
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:55, 12 August 2022
Conda
[[Category:Software]][[Category:Programming]]

16 KB (2,392 words) - 20:14, 16 April 2024
AI Reference Datasets
You may need to use the full path /blue/data/ai for software applications to find the file.

2 KB (256 words) - 15:03, 28 September 2021
NetCDF-C
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (278 words) - 14:47, 19 August 2022
MTG2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
Vim
[[Category:Software]][[Category:Programming]][[Category:Language]]

3 KB (320 words) - 18:56, 21 August 2022
MPACK
[[Category:Software]][[Category:Library]]

3 KB (307 words) - 17:03, 10 June 2022
CGView
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 19:39, 23 May 2022
Espresso SLURM
[[Category:Software]]

1 KB (144 words) - 21:20, 8 November 2022
BEAGLE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou

5 KB (615 words) - 15:36, 14 December 2022
Bertini
[[Category:Software]][[Category:Math]] Software for solving polynomial systems

2 KB (248 words) - 12:48, 15 August 2022
SCIrun
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.sci.utah.edu/cibc-software/scirun.html}}

3 KB (344 words) - 22:09, 21 August 2022
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
MORPHEUS
[[Category:Software]][[Category:Machine Learning]]

3 KB (337 words) - 19:01, 14 March 2023
Unicycler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:29, 6 December 2019
LAMP
[[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po

2 KB (245 words) - 19:29, 12 August 2022
Vt
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (273 words) - 16:13, 10 June 2022
Miniwdl
[[Category:Software]][[Category:Bioinformatics]]

2 KB (283 words) - 18:55, 1 December 2023
Reptile
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Math]] |{{#vardefine:exe|1}} 

3 KB (458 words) - 21:46, 21 August 2022
AtomEye
[[Category:Software]][[Category:Material Science]] AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics cor

3 KB (351 words) - 15:21, 12 August 2022
Dtiprep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 21:50, 27 August 2020
MTR
[[Category:Software]]

2 KB (245 words) - 14:03, 23 June 2021
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
MstatX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (288 words) - 21:22, 6 December 2019
Falco
[[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.

2 KB (283 words) - 14:11, 21 October 2022
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
HUMAnN
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (327 words) - 14:26, 11 October 2022
Kmcos
[[Category:Software]][[Category:Chemistry]]

2 KB (255 words) - 13:54, 30 April 2024
Java
[[Category:Software]][[Category:Programming]]

3 KB (448 words) - 19:10, 15 August 2022
FFmpeg
[[Category:Software]][[Category:Audio]][[Category:Visualization]]

2 KB (252 words) - 16:41, 15 August 2022
MEGASAT
[[Category:Software]][[Category:Phylogenetics]] MEGASAT is a software tool that can automatically infer genotypes from high-throughput microsatel

2 KB (278 words) - 13:22, 28 August 2020
Hal
[[Category:Software]][[Category:Phylogenetics]]

3 KB (366 words) - 18:11, 15 August 2022
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
HAPLOSWEEP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 21:20, 6 December 2019
TURBOMOLE
[[Category:Software]][[Category:Chemistry]] TURBOMOLE is a licensed software. To use it, please provide your license. We will set the file permissions a

3 KB (369 words) - 17:42, 15 August 2022
Spidey
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (295 words) - 20:44, 12 August 2022
SWIG
[[Category:Software]][[Category:library]][[Category:Programming]][[Category:Compiler]] ...ort its parse tree in the form of XML and Lisp s-expressions. SWIG is free software and the code that SWIG generates is compatible with both commercial and non

3 KB (414 words) - 20:04, 21 August 2022
Grace
[[Category:Software]][[Category:Statistics]][[Category:Graphics]] |{{#vardefine:exe|1}} 

2 KB (256 words) - 17:17, 15 August 2022
Create SSH Keys Using Putty
==Prerequisite software== Here is a list of the software you will need to be installed on your local machine to start using key-base

7 KB (1,195 words) - 13:39, 26 June 2023
MetaPhysicl
[[Category:Software]][[Category:Math]][[Category:Astronomy]][[Category:Simulation]]

2 KB (247 words) - 19:28, 18 August 2022
SLAW
[[Category:Software]][[Category:Chemistry]][[Category:Spectroscopy]]

3 KB (389 words) - 23:49, 21 August 2022
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
Paralyzer
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/PARalyzer_85/}}

3 KB (352 words) - 18:19, 27 May 2022
Slurm
[[Category:Software]][[Category:Scheduler]] ...a fair chance of using the resources without interfering with each other. Software called a resource manager and a scheduler are required to fulfill the above

5 KB (763 words) - 17:37, 5 March 2024
Micop
[[Category:Software]][[Category:Genomics]]

2 KB (269 words) - 16:40, 27 September 2022
Redis
[[Category:Software]][[Category:Data Science]][[Category:Database]]

2 KB (267 words) - 21:39, 21 August 2022
DOT
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] DOT is a software package for docking macromolecules, including proteins, DNA, and RNA. DOT p

3 KB (340 words) - 14:46, 15 August 2022
CIMS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (315 words) - 17:21, 10 June 2022
PyVista
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:56, 25 September 2020
Plotsr
[[Category:Software]]

2 KB (271 words) - 20:00, 5 August 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
Ubuntu
[[Category:Software]][[Category:Linux]] Ubuntu is an open source software operating system that runs from the desktop, to the cloud, to all your inte

3 KB (321 words) - 19:57, 14 February 2024
Qcat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 16:17, 23 January 2020
TensorFlow
[[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a

6 KB (790 words) - 15:25, 14 December 2022
CGAL
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (293 words) - 15:32, 6 June 2022
Minipolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (338 words) - 14:53, 9 December 2019
Installing Personal Python Modules
[[Category:Python]][[Category:Software]] ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt

2 KB (243 words) - 14:51, 10 February 2023
Fslmrs
[[Category:Software]][[Category:Spectroscopy]][[Category:Chemistry]] ...ingle voxel and multi-voxel (MRSI) datasets. FSL-MRS is part of FSL (FMRIB Software Library).

3 KB (293 words) - 16:50, 15 August 2022
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
SURVIVOR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 21:24, 6 December 2019
Slamdunk
[[Category:Software]][[Category:Phylogenetics]] SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis

3 KB (294 words) - 20:55, 27 May 2022
QAPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 16:54, 15 January 2021
Stampy
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (327 words) - 20:45, 12 August 2022
Phylonet
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzing and reconstructing reticulate evolutionary histories,

2 KB (263 words) - 21:23, 6 December 2019
PennCNV
[[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.

4 KB (474 words) - 21:23, 6 December 2019
PacBio
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:Workflow Automation]] |{{#vardefine:url|https://www.pacb.com/products-and-services/analytical-software/devnet/}}

2 KB (250 words) - 20:10, 24 August 2022
CellRanger-DNA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}

2 KB (263 words) - 13:25, 15 August 2022

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