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• NCBI C++ Toolkit
  NCBI C++ Toolkit provides free, portable, public domain libraries with no restrict
  3 KB (306 words) - 14:25, 19 August 2022
• Autometa
  ..., J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgu
  3 KB (300 words) - 21:19, 6 December 2019
• Package-GFE
  ...and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for mult
  2 KB (280 words) - 16:45, 10 June 2022
• Mono
  ...plementation of Microsoft's .NET Framework based on the ECMA standards for C# and the Common Language Runtime. A growing family of solutions and an acti
  2 KB (289 words) - 17:41, 15 August 2022
• Sputnik
  Sputnik is a C language program that searches dna sequence files in Fasta format for micro
  2 KB (311 words) - 15:50, 22 August 2022
• PhiSpy
  PhiSpy is a computer program written in C++, Python and R to identify prophages in a complete bacterial genome sequen
  2 KB (291 words) - 21:23, 6 December 2019
• BloomTree
  C++ and is open source.
  3 KB (302 words) - 16:49, 10 June 2022
• Bamtools
  BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM
  2 KB (289 words) - 18:02, 12 August 2022
• NAMD
  James C. Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Eliza
  2 KB (245 words) - 13:45, 19 August 2022
• PRINSEQ++
  Chan chan PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter,
  2 KB (298 words) - 18:11, 15 April 2020
• SURVIVOR
  [https://www.nature.com/articles/ncomms14061 Jeffares, Daniel C; Jolly, Clemency; Hoti, Mimoza; Speed, Doug; Shaw, Liam; Rallis, Charalampo
  3 KB (296 words) - 21:24, 6 December 2019
• MSMBuilder
  ...ls (MSMs). It is primarily written in the python programming language with C extensions for the most time consuming routines. MSMs are a powerful means
  2 KB (288 words) - 16:38, 10 June 2022
• Mega2
  Baron RV, Kollar C, Mukhopadhyay N, Weeks DE (2014) Mega2: validated data-reformatting for lin
  3 KB (310 words) - 21:21, 6 December 2019
• MPFR
  The MPFR library is a C library for multiple-precision floating-point computations with correct rou
  2 KB (302 words) - 21:22, 6 December 2019
• Mlpack
  Written in C++ and built on the Armadillo linear algebra library, the ensmallen numerica
  3 KB (301 words) - 19:43, 15 December 2020
• Managing Python environments and Jupyter kernels
  mamba install cudatoolkit=11.3 pytorch pytorch-cuda=11.3 -c pytorch -c nvidia <code>mamba install pytorch torchvision torchaudio cudatoolkit=11.3 -c pytorch</code>
  9 KB (1,505 words) - 20:18, 14 June 2024
• MetaCompare
  [https://www.ncbi.nlm.nih.gov/pubmed/29718191 Oh, M., Pruden, A., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018). MetaCompare: A computational p
  3 KB (304 words) - 21:21, 6 December 2019
• PHYUTILITY
  Smith, S. A. and Dunn, C. W. (2008) Phyutility: a phyloinformatics tool for trees, alignments, and m
  2 KB (296 words) - 20:22, 12 August 2022
• FEniCS
  ...models into efficient finite element code. With the high-level Python and C++ interfaces to FEniCS, it is easy to get started, but FEniCS offers also p
  3 KB (301 words) - 21:20, 6 December 2019
• Isonclust2
  isONclust2 is implemented in C++, which makes it fast enough to cluster large transcriptomic datasets prod
  3 KB (303 words) - 15:23, 28 October 2022

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